
==== Front
RSC Adv
RSC Adv
RA
RSCACL
RSC Advances
2046-2069
The Royal Society of Chemistry

d4ra04923c
10.1039/d4ra04923c
Chemistry
Development of the telescoped flow Pd-catalyzed aerobic alcohol oxidation/reductive amination sequence in the synthesis of new phosphatidylinositide 3-kinase inhibitor (CPL302415)†
† Electronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d4ra04923c

https://orcid.org/0000-0002-6648-0604
Michałek Stanisław a
https://orcid.org/0000-0002-7875-6751
Maj Anna M. a
https://orcid.org/0000-0002-7807-6641
Gurba-Bryśkiewicz Lidia a
https://orcid.org/0000-0002-4922-4465
Maruszak Wioleta a
Wiśniewski Krzysztof a
Zagozda Marcin a
Stypik Mariola a
Dubiel Krzysztof a
Wieczorek Maciej a
a Celon Pharma S.A. ul. Marymoncka 15 05-152 Kazuń Nowy Poland stanislaw.michalek@celonpharma.com
anna.maj@celonpharma.com

6 9 2024
4 9 2024
6 9 2024
14 39 2851628523
8 7 2024
12 8 2024
This journal is © The Royal Society of Chemistry
2024
The Royal Society of Chemistry
https://creativecommons.org/licenses/by-nc/3.0/ This article is licensed under a Creative Commons Attribution-Non Commercial 3.0 Unported Licence. You can use material from this article in other publications without requesting further permissions from the RSC, provided that the correct acknowledgement is given and it is not used for commercial purposes.
Herein, we describe a two-step sequential flow synthesis: Pd-catalyzed aerobic oxidation to an aldehyde 2, which is then converted by reductive amination in H-Cube® PRO into CPL302415 (3). CPL302415 is our new PI3Kδ inhibitor, which is now under evaluation for the treatment of systemic lupus erythematosus. The process was optimized using the DoE approach and generalized to other biologically active derivatives of CPL302415.

Development of a telescopic sequence for the last two steps in the CPL302415 synthesis (71.6% total yield). The procedure was generalized into the synthesis of other biologically active PI3Kδ inhibitors based on the pyrazolo[1,5-a]pyrimidine core.

Narodowe Centrum Badań i Rozwoju 10.13039/501100005632 KICHAI – Preclinical and Clinical Development POIR.01.02.00-00-0085/18-00 pubstatusPaginated Article
==== Body
pmcDue to advantages such as high efficiency, safety and precise reaction control, continuous flow technology has become an attractive alternative to the batch process, including the synthesis of active pharmaceutical ingredients (APIs).1 Moreover, reactions carried out in flow enable the combination of multiple transformations into one procedure, the so-called telescoped synthesis,2 thereby avoiding manual workup between different stages and reducing solvent consumption. This consequently leads to a reduction in the amount of solvent-related waste, which is usually a determining factor in environmental impact. For example, GlaxoSmithKline (GSK) reported that solvent-related waste represents 80% of all waste.3 The additional advantage of the flow process is the use of small-diameter tubes, which allows for better mass/heat transfer and more effective mixing, and consequently, lower energy consumption. Therefore, although developing a flow method is a very labor-intensive task and initially more difficult to implement than batch synthesis, continuous API production is considered not only more sustainable4 but also more economical and is therefore supported by regulatory agencies.5 Recently, our laboratory became interested in transforming selected batch reactions into flow procedures.6 One of these was the synthesis of CPL302415 (Fig. 1), a new promising PI3Kδ inhibitor and a member of the first class PI3K (phosphoinositide 3-kinase) inhibitors.7 This type of compound regulates the differentiation, proliferation, migration, and survival of immune cells, enabling therapeutic opportunities for the treatment of inflammatory and autoimmune diseases, including asthma and systemic lupus erythematosus (SLE).8 CPL302415 is now under evaluation for the treatment of systemic lupus erythematosus.

Fig. 1 The two final steps in the synthesis pathway of CPL302415.

The aim of this work was to develop a new, simple, high-yielding, flow-through, lab-scale method for the reductive amination of 5-[2-(difluoromethyl)-1H-benzimidazol-1-yl]-7-(morpholin-4-yl)pyrazolo[1,5-a]pyrimidine-2-carbaldehyde (2) to 1-{2-[(4-tert-butylpiperazin-1-yl)methyl]-7-(morpholin-4-yl)pyrazolo[1,5-a]pyrimidin-5-yl}-2-(difluoromethyl)-1H-benzimidazole (3) and combine it in a telescoped sequence with the antecedent precursor in the synthesis pathway, flow oxidation of {5-[2-(difluoromethyl)-2,3-dihydro-1H-1,3-benzodiazol-1-yl]-7-(morpholin-4-yl)pyrazolo[1,5-a]pyrimidin-2-yl}methanol (1b) (Fig. 1). The third objective was to generalize the established protocol in order to quickly build a chemical library of other biologically active potential PI3Kδ inhibitors based on the pyrazolo[1,5-a]pyrimidine core. Additionally, we aimed to make the whole synthesis environmentally sustainable and easy to integrate at a large scale for the potential production of active pharmaceutical ingredients (API) (CPL302415).

In one of our previous articles, we thoroughly described the development and optimization of the very effective and selective Pd-catalyzed flow aerobic oxidation of alcohol 1b to aldehyde 2;6a thus, we were primarily interested in developing the reductive amination of 5-[2-(difluoromethyl)-1H-benzimidazol-1-yl]-7-(morpholin-4-yl)pyrazolo[1,5-a]pyrimidine-2-carbaldehyde (2). Typically, reductive amination is carried out with stoichiometric reductors such as sodium cyanoborohydride (NaBH3CN)9 or sodium triacetoxyborohydride [NaBH(OAc)3].10 However, due to better atom economy, more convenient processing as well as lower quantity of waste formed during the reaction, its catalytic version was more extensively studied and also used in industrial application. The significant examples of such processes were published by Genzyme Corporation,11 Janssen Research & Development12 or Eli Lilly and Company.13 Thus, we preferentially chose to perform this transformation with H2 as a reductor and with a fixed-bed catalyst in order to avoid catalyst separation from the reaction mixture, which is very convenient in the late stage of API synthesis. The experiments were performed using the continuous-high pressure hydrogenation apparatus, H-Cube® Pro from ThalesNano, where hydrogen was generated by the electrolysis of water and mixture of dissolved reagents and gas was pumped through a suitable fixed-bed catalyst encapsulated in a metal cartridge. The preliminary tests results are gathered in Table 1. The reactions were realized in the presence of 20% Pd(OH)2/C and 10% Pd/C both with CatCart® 70 mm length, containing 380 ± 5 mg and 260 ± 5 mg of the catalyst, respectively. The reactions were carried out in MeOH, DCM, DMA, dioxane, and toluene/EtOAc (1/1) mixture, and the temperature was varied from 50 °C to 90 °C. The best yield (87.7%) of the desired product 3 was observed in the presence of toluene/EtOAc (1/1) mixture at 90 °C under 3 bar of system pressure with flow of H2 = 18 mL min−1 and flow of reagents = 0.3 mL min−1. Moreover, the results show that 10% Pd/C is twice as effective as 20% Pd(OH)2/C (Table 1; entries 9 and 10); under the same conditions, we obtained 43.5% of 3 with 20% Pd(OH)2/C and 87.7% with 10% Pd/C. Taking into account that 10% Pd/C CatCart® is 40% chipper than 20% Pd(OH)2/C and that the previously described flow aerobic oxidation of primary alcohol 1b to aldehyde 2 was carried out in toluene/EtOAc 1 : 1 mixture, as well as our main objective, which is the development of the telescoped sequence, we were interested in keeping a mixture of toluene/EtOAc as a convenient choice of solvent and 10% Pd/C as the catalyst in the reductive amination. To select the most appropriate reaction conditions, we applied the design of experiment (DoE) approach.14 The DoE study and statistical analysis were performed using the design of experiment tools of STATISTICA software (v.13.3). We implemented central composite design (CCD) and response surface methodology (RSM) 2^(5), including two repetitions at a central point for the reproducibility study. The following parameters were considered for the multivariate optimization, i.e., temperature (in the range of 70–100 °C), system pressure (between 1 and 5 bar), flow of reagents (between 0.3 and 2.1 mL min−1), flow of H2 (between 6 and 48 mL min−1), and the equivalent of N-tert-butylpiperazine (between 1.2 and 4.0) (Table S1†). The fit of the obtained RSM model was R2 = 0.69 (Fig. S1†). ANOVA analysis shows that the main statistically significant effect on the yield of product 3 is the interaction effect between the equivalent of N-tert-butylpiperazine and the temperature (p = 0.0037), which has a negative influence. The second very important statistically effect is the linear positive influence of N-tert-butylpiperazine equivalents (p = 0.0110). Next, we also observed the linear negative effect of the reagents flow (p = 0.0221), negative interaction effect of temperature and system pressure (p = 0.0262), negative interaction effect between the temperature and H2 flow (p = 0.0276), positive interaction effect of reagents flow and hydrogen flow (p = 0.0313), and at the end, negative quadratic effect of temperature (p = 0.0487) (Fig. S1†). From the results of the RSM model, the maximum predicted CPL302415 product 3 yields were in the temperature range from 70 °C to 90 °C, system pressure range from 1.6 to 4.2 bar, flow of reagents range from 0.3 to 0.7 mL min−1, flow of H2 range from 6 to 32 mL min−1, and equivalent of N-tert-butylpiperazine range from 3.4 to 4.0 (Fig. S1†). In the next step, we experimentally investigated the influence of the reaction temperature on the yield of the desired product 3 (CPL302415) in the chosen toluene/EtOAc mixture in the presence of the most effective conditions in the preliminary screening of the 10% Pd/C catalyst. In this series of experiments, the temperature was varied in the range of 70–110 °C, the flow of the hydrogen was fixed at 18 mL min−1, the rate of reagents flow was 0.7 mL min−1, and the system pressure was maintained at three bar; the last three parameters were established based on the range obtained in DoE analysis. In order to improve the economic aspect of the reaction and keeping in mind the green metrics as well as the limited solubility of reagents during flow oxidation, we tried to decrease the equivalents of N-tert-butylpiperazine compared to the optimum obtained from the DoE model and we kept two equivalents of N-tert-butylpiperazine. The results shown in the graph (Fig. 2) show that the highest yield of the product 3 (93%) was observed at 90 °C; a further increase in temperature resulted in a decrease in the quantity of product 3 to 87% at 110 °C. We also noticed that at 90 °C, increasing the hydrogen flow from 18 mL min−1 to 30 mL min−1 resulted in a significant decrease in the amount of 3 from 93% to 86.2%.

Screening of the catalyst and solvent for the reductive amination of 2 carried out under flow conditionsa

	
Entry	Catalyst	Solvent	Eq. of N-tert-butylpiperazine	T (°C)	P sys (bar)	Flow of reagent (mL min−1)	Flow of H2 (mL min−1)	% of 2b	% of 1b	% of 3b	
1	20% Pd(OH)2/C	MeOH	4	50	3	1	60	92.5	1.2	4.6	
2				70	3	1	6	11.0	22.3	57.2	
3				70	1	1	6	46.5	1.9	46.7	
4		DCM	1.2	70	10	0.5	6	54.7	9.7	28.3	
5			4	50	1	1	6	0.1	99.4	0.2	
6		DMA	4	70	3	0.5	6	0	98.7	0.3	
7		Dioxane	4	70	3	1	6	20.8	10.7	65.8	
8			4	90	3	0.5	6	0	13.7	81.8	
9		Toluene/EtOAc (1/1)	2	90	3	0.3	18	0	10.7	43.5	
10	10% Pd/C	Toluene/EtOAc (1/1)	2	90	3	0.3	18	0	8.9	87.7	
a Standard reaction conditions: substrate = 220 mg (0.552 mmol) and 157 mg N-tert-butylpiperazine were dissolved in selected solvent (8 mL); CatCart® 70 mm long, containing 20% Pd(OH)2/C 380 ± 5 mg and 10% Pd/C 260 ± 5 mg.

b % determined by UHPLC; for details see ESI.

Fig. 2 Reductive amination of 2 towards product 3—temperature influence. Conditions: 0.01 M solution of 2 + 2 equiv. of N-tert-butylpiperazine in toluene/EtOAc mixture; H-Cube® Pro: 10% Pd/C 70 mm, Psys = 3 bar, flow of reagents = 0.7 mL min−1; flow of H2 = 18 mL min−1. Conversion of 2 and selectivity for 1 and 3 were determined by UHPLC.

Next, we were also interested in the stability and performance of the ThalesNano CatCart® 10% Pd/C 70 mm cartridge in the reductive amination of our substrate 5-[2-(difluoromethyl)-1H-benzimidazol-1-yl]-7-(morpholin-4-yl)pyrazolo[1,5-a]pyrimidine-2-carbaldehyde (2). Thus, for this purpose, 148 mL of the solution containing 8.38 g of aldehyde 2 was pumped through the catalyst cartridge (10% Pd/C; 70 mm long) under the optimized conditions for 6 h 15 min and samples were taken regularly (Fig. 3). Even after this time, we obtained 93–94% of 3; the results demonstrate very high performance of the 10% Pd/C catalyst in the transformation, and no adsorption of product 3 on the catalyst cartridge was observed. Furthermore, the ICPMS of the crude reaction mixture from this experiment detected only 0.005 ppm of Pd.

Fig. 3 Stability of the catalyst. Conditions: 0.01 M solution of 2 + 2 equiv. of N-tert-butylpiperazine; H-Cube® Pro: 10% Pd/C 70 mm, 90 °C, Psys = 3 bar, flow of reagents = 0.7 mL min−1; flow of H2 = 18 mL min−1. Conversion of 2 and selectivity for 3 and 1 were determined by UHPLC.

In the next series of experiments, we additionally compared three catalysts, namely, 5% Pd/C; 10% Pd/C and 20% Pd(OH)2/C, sealed in a commercially available CatCart® 30 mm (Fig. 4A). In this case, the reaction was carried out at 90 °C under 3 bar of system pressure with the hydrogen rate fixed at 18 mL min−1 and the flow of reagents at 0.3 mL min−1. The highest quantity of 3 (79.1%) was obtained for 10% Pd/C. We also observed that using CatCart® 30 mm, the optimum flow of hydrogen was 30 mL min−1. Increasing the H2 flow rate from 18 mL min−1 to 30 mL min−1 let us boost the amount of 3 to 82.6%, further increasing of the hydrogen flow, which resulted in a lower percent of 3 with 42 mL min−1, which was 79.8% (Fig. 4B).

Fig. 4 (A) Performance of different CatCart® length 30 mm in the reductive amination of 2 towards product 3 in toluene/EtOAc (1 : 1). (B) Reductive amination of 2 towards product 3—influence of hydrogen rate; 10% Pd/C CatCart® length 30 mm. Conversion of 2 and selectivity for 1 and 3 were determined by UHPLC.

With the two last optimized steps of CPL302415 synthesis, we started to combine the reactions into one telescoped continuous flow sequence, where we used toluene/EtOAc mixture and Pd-based catalysts in both transformations. Fig. 5 represents our approach to the telescoped protocol for the synthesis of CPL302415 (for detailed description of applied equipment, see ESI†). The first test of the telescoped sequence protocol was carried out applying the optimized procedures that were established independently for each step. The aerobic oxidation of alcohol was performed according to the described procedure6a using two combined Vapourtec easy-Medchem systems together with four PFA tubular reactors (10 mL, id = 1 mm). The two liquid feeds were introduced with peristaltic pumps and oxygen gas was introduced through a mass flow controller (Vapourtec SF-10 pump; input pressure 5 bar). The system solvent bottle was filled with toluene/EtOAc (1/1) mixture. The substrate feed and gas feed were mixed using a Y-shaped mixer, then run through a 28 cm (id = 1 mm) tube to enable the substrate solution to saturate it with oxygen and later combined with the catalyst solution. This part of the experiment was controlled with FlowWizard™ software, which calculated the reaction time and operated the easy-Medchem system. The oxidation step was carried out with 20 mol% of Pd(OAc)2/pyridine = 1/1.3 at T = 120 °C under PO2 = 5 bar and with VO2 = 0.1 mL min−1; Vreagents = 1 mL min−1, which resulted in 84% yield of 2. Next, the reaction mixture was pumped through the filter with neutral aluminum oxide, and after that, the third stream with a solution of N-tert-butylpiperazine in toluene/EtOAc (1/1) mixture was added, keeping the 2/N-tert-butylpiperazine ratio constant at 1 eq./2 eq. Then, the mixture was passed through two combined PFA tubular reactors (20 mL, id = 1 mm) and one PFA tubular reactor (10 mL, id = 1 mm) at 50 °C in order to generate the imine. On account of the fact that oxidation takes place using pure oxygen at a pressure of 5 bar and the subsequent reductive amination involves molecular hydrogen, for safety reasons, we decide to interrupt our single-flow system and introduce an additional container into the line. In order to remove oxygen from the reaction mixture, the tank was placed in an ultrasonic bath and the solution was additionally rinsed with argon. The second reason why we decided to disrupt the flow is the difference in the flow rate of the reactants between the two stages. In oxidation, the total speed of reactants is 2.1 mL min−1, while in reductive amination, the initial reagent speed is 0.7 mL min−1. The interruption in the flow process also let us take the sample after the first stage. In the final step, the reaction mixture is pumped from the tank by the H-Cube® Pro apparatus, where it is mixed with H2 and passed through 10% Pd/C, CatCart® 70 mm length. The reaction was controlled by H-Cube® Pro ThalesNano software. During the amination reductive, we kept the temperature at 90 °C, flow of the hydrogen was fixed on 18 mL min−1, the rate of reagents flow was 0.7 mL min−1, and the system pressure was maintained at 3 bar. In this experiment, which was conducted twice, we observed product 3 yields of 72 and 74%. Thus, we consider that this process is quite reproductive and we can also add that the small quantities of Pd(OAc)2/pyridine, which still may be present in the reactant solution, did not poison the 10% Pd/C catalyst. The whole process was analyzed after each step by off-line UHPLC.

Fig. 5 Telescoped flow Pd-catalyzed aerobic alcohol oxidation/reductive amination of alcohol 1b to CPL302415 (3).

The first screening and optimization of reductive amination was performed at a higher concentration than that achievable after flow oxidation. Thus, to better match the two steps of our flow process, we carried out the additional small tuning of all protocols applying DoE design. The DoE study and statistical analysis were performed using the design of experiment tools of STATISTICA software (v.13.3). In one of our previous articles, we fully described the optimization of the oxidation step6a and we already know that in this transformation, we have no margin for further increasing the efficacy and process intensity. For all these reasons, we decided to optimize only the speed of the reagents in reductive amination in the range of 0.7–1.2 mL min−1 and the hydrogen flow rate in the range of 6–30 mL min−1. The raw results are shown in Table 2.

Input parameters and results from DoE full design 22 performed in telescoped flow Pd-catalyzed aerobic alcohol oxidation/reductive amination of alcohol 1b to CPL302415 (3) – optimization of the reductive aminationa

	
Entry	V of reagents (mL min−1)	V of H2 (mL min−1)	Conv. of 1bb (%)	% of 2b	% of 1bb	% of 1bb	% of 3b	
1	0.7	6	78.6	0.0	21.4	0.7	74.5	
2	1.2	6	76.9	0.2	23.1	2.3	70.0	
3	0.7	30	68.7	0.3	31.3	11.9	49.8	
4	1.2	30	68.9	0.2	31.1	5.1	58.8	
a Standard reaction conditions: substrate 1b = 20 mg (0.05 mmol) dissolved in 2 mL toluene/EtOAc = 1 : 1, Psys = 3 bar; T = 90 °C; 2 equivalents of N-tert-butylpiperazine.

b Determined by UHPLC; for details, see ESI.

Statistical analysis of the prediction model shows that the flow of H2 has the greatest influence on the yield of product 3 and is a negative effect. On the other hand, the interaction between the flow of hydrogen and the flow of the reagents is slightly positive for the yield of product 3 (Fig. S2†). The response surface fitted to the calculated model is shown in Fig. 6.

Fig. 6 Response surface for the yield of CPL302415 (3) (%) at Psys = 3 bar; T = 90 °C; 2 equivalents of N-tert-butylpiperazine.

The optimal range of input parameters to obtain the maximum yield of the product (3) was from 6 mL min−1 to 11.5 mL min−1 of the hydrogen flow rate for the reagents flow rate of 0.7 mL min−1 (the red area in Fig. 6). The ICPMS analysis of the crude reaction mixture from the telescoped sequence experiment detected 38.847 ppm of Pd.

We also explored the generalizability of this procedure for the synthesis of other PI3Kδ inhibitors based on the pyrazolo[1,5-a]pyrimidine core and by reductive amination (2) with various piperazine derivatives such as (cyclopropylcarbonyl)piperazine, 2-(4-piperidyl)-2-propanol or 2-methyl-2-2(piperazin-1-yl)propanamide (Table 3). The reactions were carried out in the presence of 10% Pd/C CatCart® 70 mm under the conditions optimized for N-tert-butylpiperazine, i.e., 2 equivalents of piperazine derivative, 90 °C, the hydrogen flow was set at 18 mL min−1, the reagent rate was 0.7 mL min−1 and the system pressure was maintained at 3 bar. For all the tested piperazine derivatives, complete aldehyde conversion and high yield of the desired product from 85 to 88% were observed.

Reductive amination of 2 in the presence of different piperazine derivatives carried out under flow conditionsa

	
Entrya	Piperazine derivatives	Conv. of 2b (%)	% of 1b (%)	% of 4b (%)	
1		100	7.9	85.4	
2		100	3.9	86.3	
3		100	4.7	88.4	
a Standard reaction conditions: substrate 2 = 20 mg (0.05 mmol) dissolved in 2 mL toluene/EtOAc = 1 : 1; 2 equivalents of piperazine derivative; Psys = 3 bar; T = 90 °C; flow of reagents = 0.7 mL min−1; flow of H2 = 18 mL min−1.

b % determined by UHPLC; for details, see ESI.

Moreover, we investigated the sustainability of batch and flow processes by calculating selected green metrics for both the methods.15 The first graph in Fig. 7a shows the radial polygon performance of reductive amination for batch and flow processes compared to the ideal green values. Fig. 7b represents the performance of the last two steps combined together in the synthesis of CPL302415, i.e., oxidation and reductive amination, carried out in batch syntheses as well as by telescoped flow sequence. Considering only the reductive amination step, almost all of the examined parameters, i.e., atom economy (AE), reaction yield (rxn yield), material recovery parameter (MRE), and reaction mass efficiency (RME), were more favorable and closer to the ideal values for the flow process (Fig. 7a; Table 4; for calculations details, see ESI†). Similarly, calculations performed jointly for the two steps of CPL302415 synthesis also showed the advantages of the flow process. For AE, rxn yield and SF (stoichiometric factor) metrics, we noted the values closer to ideal for the flow procedure, while the MRP and RME remained almost identical for batch and flow transformations (Fig. 7b). However, the flow process demonstrates better green metrics: the most important is the high improvement of the total reaction yield from 57.8% to 71.6% when going from the batch to the flow process. Also, by conducting the reaction in the flow process, we managed to eliminate the DCM applied in batch reductive amination, which is considered as an undesirable solvent, and replaced it with the more favorable mixture of toluene and ethyl acetate.

Fig. 7 Comparison of green metrics between the batch and flow process of the reductive amination step (a) and the summary of the last two steps in the synthesis of CPL302415—oxidation and reductive amination (b).

Comparison of the green metrics between the batch and flow process of the reductive amination step and summary of the last two steps in the synthesis of CPL302415—oxidation and reductive aminationa

Green metrics	Batch	Flow	Ideal	
Reductive amination step	
E-total	46.7	37.7	0	
E-factor after solvent recycling	37.2	4.3	0	
Yield	83	86.4	100	
AE	69.7	96.7	100	
PMI	37.9	5.3	1	
RME	2.6	18.9	100	
 	
Summary of oxidation and reductive amination steps	
E-factor	90.7	199.4	0	
E-factor after solvent recycling	80.9	21.4	0	
Yield	57.8	71.6	100	
AE	56.4	90.7	100	
PMI	81.9	22.4	1	
RME	1.2	4.5	100	
a For details, see ESI.

Fig. 8 represents the overall E-factor profile. The diagrams (a) and (b) refer only to reductive amination step in the batch and flow process, respectively, while diagrams (c) and (d) show the E-factor profile jointly for oxidation and reductive amination for batch and telescoped flow sequence, respectively. Both catalytic oxidation and especially reductive amination, which is carried out in the presence of a fixed-bed catalyst encapsulated in the metal cartridge and H2 as the reductor, do not require such heavy workup like in the case of batch synthesis using NaBH(OAc)3. Consequently, in flow reactions, the greatest impact on the E-factor profile is due to the solvents necessary to dissolve the substrates. These solvents can be easily recovered and recycled. Thus, the telescoped flow synthesis has initially a very high E-factor that reaches almost 200; it can be significantly improved up to 21.4 after solvent recycling (Table 4).

Fig. 8 Comparison of the E-factor profile between reductive amination in batch (a) and in flow (b), and the summary of oxidation and reductive amination in batch (c), and telescoped oxidation and reductive amination in flow (d).

Conclusions

We developed the interrupted telescoped flow sequence of oxidation and reductive amination as the key step in the synthesis of our new PI3Kδ inhibitor, CPL302415. The new flow sequence let us not only reach a higher yield of the desired product (increase from 57.8 to 71.6%) but we also achieved better green metrics in comparison to the batch synthesis. The above protocol was also generalized for the synthesis of other biologically active new PI3Kδ inhibitors based on the pyrazolo[1,5-a]pyrimidine core and applied to the quick building of the chemical library.

Abbreviations

AE Atom economy

DMA N,N-Dimethylacetamide

DoE Design of experiment

E-factor Environmental factor

E-rxn solvent E-factor of solvents taken to dissolve the substrates

Eq. Equivalents

MPR Material recovery parameter

PMI Process mass intensity

RME Reaction mass efficiency

Rxn yield Reaction yield

SF Stoichiometric factor

Data availability

The authors confirm that the data supporting this study are included within the article and/or its ESI.†

Author contributions

Synthesis, S. M., A. M.; analytical evaluation L. G.-B., W. M.; investigation, S. M., A. M.; reductive amination batch synthesis M. S.; writing-original draft preparation, S. M., A. M.; writing-review and editing, L. G.-B., W. M., K. W., M. Z.; DoE and statistical analysis: L. G.-B.; visualization A. M., and L. G.-B. All authors have read and agreed to the published version of the manuscript.

Conflicts of interest

The authors declare the following financial interest/personal relationships which may be considered as potential competing interests. All contributors to this work at the time of their direct involvement in the project were full-time employees of Celon Pharma S.A. M. Wieczorek is the CEO of Celon Pharma S.A. Some of the authors are the shareholders of Celon Pharma S.A.

Supplementary Material

RA-014-D4RA04923C-s001

This research was co-financed by the National Centre for Research and Development “Narodowe Centrum Badan i Rozwoju” and Celon Pharma S.A., project “KICHAI – Preclinical and clinical development of innovative lipid kinases inhibitor as a candidate for the treatment of steroid-resistant and severe inflammatory lung diseases”, grant number POIR.01.02.00-00-0085/18-00. We thank to Adrian Kierznowski and Łukasz Marchela (Celon Pharma S.A.) for ICPMS analysis; Ms Aleksandra Świderska and Mr Arkadiusz Leniak (Celon Pharma S.A.) for NMR analyses.
==== Refs
Notes and references

(a) Bianchi P. Dubart A. Moors M. Cornut D. Duhirwe G. Vilanovac J. A. Monbaliu J.-Ch. M. React. Chem. Eng. 2023 8 1565 10.1039/D3RE00051F
(b) Suveges N. S. de Souza R. O. M. A. Gutmann B. Kappe C. O. Eur. J. Org Chem. 2017 6511 10.1002/ejoc.201700824
(c) Bloemendal V. R. L. J. Janssen M. A. C. H. van Hest J. C. M. Rutjes F. P. J. T. React. Chem. Eng. 2020 5 1186 10.1039/D0RE00087F
(d) Filipponi P. Cerra B. Piccinno A. Camaioni E. Gioiello A. Org. Process Res. Dev. 2024 28 5 1648 10.1021/acs.oprd.3c00295
(e) Bana P. Szigetvári Á. Kóti J. Éles J. Greiner I. React. Chem. Eng. 2019 4 652 10.1039/C8RE00266E
(f) Baumann M. Baxendale I. R. Beilstein J. Org. Chem. 2015 11 1194 10.3762/bjoc.11.134 26425178
(g) Bogdan A. R. Dombrowski A. W. J. Med. Chem. 2019 62 6422 10.1021/acs.jmedchem.8b01760 30794752
(h) Porta R. Benaglia M. Puglisi A. Org. Process Res. Dev. 2016 20 2 10.1021/acs.oprd.5b00325
(i) Akwi F. M. Watts P. Chem. Commun. 2018 54 13894 10.1039/C8CC07427E 30483683
(j) Fülöp Z. Szemesi P. Bana P. Éles J. Greiner I. React. Chem. Eng. 2020 5 1527 10.1039/D0RE00273A
(k) Fitzpatrick D. E. Battilocchio C. Ley S. V. ACS Cent. Sci. 2016 2 131 10.1021/acscentsci.6b00015 27163040
(l) Malet-Sanz L. Susanne F. J. Med. Chem. 2012 55 4062 10.1021/jm2006029 22283413
(m) Mougeot R. Jubault P. Legros J. Poisson T. Molecules 2021 26 7183 10.3390/molecules26237183 34885756
(n) Burange A. S. Osman S. M. Luque R. iScience 2022 25 103892 10.1016/j.isci.2022.103892 35243250
(a) Damião M. C. F. C. B. Galaverna R. Kozikowski A. P. Eubanks J. Pastre J. C. React. Chem. Eng. 2017 2 896 10.1039/C7RE00125H
(b) Ötvös S. B. Llanes P. Pericàs M. A. Kappe C. O. Org. Lett. 2020 22 8122 10.1021/acs.orglett.0c03100 33026815
(c) Clayton A. D. Pyzer-Knapp E. O. Purdie M. Jones M. F. Barthelme A. Pavey J. Kapur N. Chamberlain T. W. Blacker A. J. Bourne R. A. Angew. Chem., Int. Ed. 2023 62 e202214511 10.1002/anie.202214511 36346840
(d) Herbrik F. Sanz M. Puglisi A. Rossi S. Benaglia M. Chem.–Eur. J. 2022 28 e2022001 10.1002/chem.202200164 35239197
(e) Martins G. M. Magalhães M. F. A. Brocksom T. J. Bagnato V. S. de Oliveira K. T. J. Flow Chem. 2022 12 371 10.1007/s41981-022-00234-0 35873601
(f) di Filippo M. Baumann M. Molecules 2021 26 6992 10.3390/molecules26226992 34834084
(g) Steiner A. Nelson R. C. Dallinger D. Kappe C. O. Org. Process Res. Dev. 2022 26 2532 10.1021/acs.oprd.2c00214 36032361
(h) Grant P. S. Brimble M. A. Furker D. P. Chem.–Asian J. 2019 14 1128 10.1002/asia.201800903 30058292
(i) Jiao J. Nie W. Yu T. Yang F. Zhang Q. Aihemaiti F. Yang T. Liu X. Wang J. Li P. Chem.–Eur. J. 2020 27 4817 10.1002/chem.202004477 33034923
(a) Jimenez-Gonzalez C. Curzons A. D. Constable D. J. C. Cunningham V. L. Int. J. Life Cycle Assess. 2004 9 115 10.1007/BF02978570
(b) Curzons A. D. Jimenez-Gonzalez C. Duncan A. L. Constable D. J. C. Cunningham V. L. Int. J. Life Cycle Assess. 2007 12 272 10.1065/lca2007.03.315
Rogers L. Jensen K. F. Green Chem. 2019 21 3481 10.1039/C9GC00773C
(a) Bana P. Örkényi R. Lövei K. Lakó Á. Túrós G. I. Éles J. Faigl F. Greiner I. Bioorg. Med. Chem. 2017 25 6180 10.1016/j.bmc.2016.12.046 28087127
(b) Brennan Z. , https://www.in-pharmatechnologist.com/Processing/FDA-calls-on-manufacturers-to-begin-switch-from-batch-to-continuousproduction, accessed November 15th 2023
(a) Michałek S. Gurba-Bryśkiewicz L. Maruszak W. Zagozda M. Maj A. M. Ochal Z. Dubiel K. Wieczorek M. RSC Adv. 2022 12 33605 10.1039/D2RA07003K 36505705
(b) Michałek S. Maj A. M. Gurba-Bryśkiewicz L. Maruszak W. Zagozda M. Ochal Z. Dubiel K. Wieczorek M. React. Chem. Eng. 2023 8 1117 10.1039/D2RE00561A
(c) Michałek S. Powała A. Gurba-Bryśkiewicz L. et al. Monatsh. Chem. 2023 154 1307 10.1007/s00706-023-03121-z
Stypik M. Michałek S. Orłowska N. Zagozda M. Dziachan M. Banach M. Turowski P. Gunerka P. Zdżalik-Bielecka D. Stańczak A. Kędzierska U. Mulewski K. Smuga D. Maruszak W. Gurba-Bryśkiewicz L. Leniak A. Pietruś W. Ochal Z. Mach M. Zygmunt B. Pieczykolan J. Dubiel K. Wieczorek M. Pharmaceuticals 2022 15 927 10.3390/ph15080927 36015075
(a) Saurat T. Buron F. Rodrigues N. de Tauzia M.-L. Colliandre L. Bourg S. Bonnet P. Guillaumet G. Akssira M. Corlu A. Guillouzo C. Berthier P. Rio P. Jourdan M.-L. Bénédetti H. Routier S. J. Med. Chem. 2014 57 613 10.1021/jm401138v 24345273
(b) Parker P. J. Biochem. Soc. Trans. 2004 32 893 10.1042/BST0320893 15506918
(c) Engelman J. A. Luo J. Cantley L. C. Nat. Rev. Genet. 2006 7 606 10.1038/nrg1879 16847462
(d) Foster J. G. Blunt M. D. Carter E. Ward S. G. Pharmacol. Rev. 2012 64 1027 10.1124/pr.110.004051 23023033
(e) Safina B. S. Baker S. Baumgardner M. Blaney P. M. Chan B. K. Chen Y.-H. Cartwright M. W. Castanedo G. Chabot C. Cheguillaume A. J. Goldsmith P. Goldstein D. M. Goyal B. Hancox T. Handa R. K. Iyer P. S. Kaur J. Kondru R. Kenny J. R. Krintel S. L. Li J. Lesnick J. Lucas M. C. Lewis C. Mukadam S. Murray J. Nadin A. J. Nonomiya J. Padilla F. Palmer W. S. Pang J. Pegg N. Price S. Reif K. Salphati L. Savy P. A. Seward E. M. Shuttleworth S. Sohal S. Sweeney Z. K. Tay S. Tivitmahaisoon P. Waszkowycz B. Wei B. Yue Q. Zhang C. Sutherlin D. P. J. Med. Chem. 2012 55 5887 10.1021/jm3003747 22626259
Shankaraiah N. Pilli R. A. Santo L. S. Tetrahedron Lett. 2008 49 5098 10.1016/j.tetlet.2008.06.028
Abdel-Magid A. F. Carson K. G. Harris B. D. Maryanoff C. A. Shah R. D. J. Org. Chem. 1996 61 3849 10.1021/jo960057x 11667239
Cooper C. G. F. Lee E. R. Silva R. A. Bourque A. J. Clark S. Katti S. Novorozhkin V. Org. Process Res. Dev. 2012 16 1090 10.1021/op2001222
Fitzgerald A. E. Mani N. S. Synthesis 2012 44 2469 10.1055/s-0032-1316550
(a) May S. A. Johnson M. D. Buser J. Y. Campbell A. N. Frank S. A. Haeberle B. D. Hoffman P. C. Lambertus G. R. McFarland A. D. Moher E. D. White T. D. Org. Process Res. Dev. 2016 20 1870 10.1021/acs.oprd.6b00148
(b) Johnson M. D. May S. A. Haeberle B. Lambertus G. R. Pulley S. R. Stout J. R. Org. Process Res. Dev. 2016 20 1305 10.1021/acs.oprd.6b00137
(a) TIBCO Software Inc. , Data Science Textbook, 2020, https://docs.tibco.com/data-science/textbook, accessed 15th November 2023
(b) StatSoft's Electronic Statistics Textbook, StatSoft Inc., 2006, https://www.statsoft.pl/textbook/stathome.html, accessed 15th November 2023
(a) McElroy C. R. Constantinou A. Jones L. C. Summerton L. Clark J. H. Green Chem. 2015 17 3111 10.1039/C5GC00340G
(b) Constable D. J. C. Curzons A. D. Cunningham V. L. Green Chem. 2002 4 521 10.1039/B206169B
(c) Sheldon R. A. ACS Sustainable Chem. Eng. 2018 6 32 10.1021/acssuschemeng.7b03505
(d) Andraos J. Hent A. J. Chem. Educ. 2015 92 11 1820 10.1021/acs.jchemed.5b00058
