
==== Front
Nat Commun
Nat Commun
Nature Communications
2041-1723
Nature Publishing Group UK London

39237508
52177
10.1038/s41467-024-52177-w
Author Correction
Author Correction: PLMSearch: Protein language model powers accurate and fast sequence search for remote homology
http://orcid.org/0009-0000-4375-9760
Liu Wei 1
http://orcid.org/0000-0001-5850-0049
Wang Ziye 1
You Ronghui 1
Xie Chenghan 2
Wei Hong 3
http://orcid.org/0000-0003-2910-6725
Xiong Yi 4
http://orcid.org/0000-0003-2912-7737
Yang Jianyi yangjy@sdu.edu.cn

5
http://orcid.org/0000-0002-6067-5312
Zhu Shanfeng zhusf@fudan.edu.cn

16789
1 https://ror.org/013q1eq08 grid.8547.e 0000 0001 0125 2443 Institute of Science and Technology for Brain-Inspired Intelligence and MOE Frontiers Center for Brain Science, Fudan University, 200433 Shanghai, China
2 https://ror.org/013q1eq08 grid.8547.e 0000 0001 0125 2443 School of Mathematical Sciences, Fudan University, 200433 Shanghai, China
3 https://ror.org/01y1kjr75 grid.216938.7 0000 0000 9878 7032 School of Mathematical Sciences, Nankai University, 300071 Tianjin, China
4 https://ror.org/0220qvk04 grid.16821.3c 0000 0004 0368 8293 Department of Bioinformatics and Biostatistics, Shanghai Jiao Tong University, 200240 Shanghai, China
5 https://ror.org/0207yh398 grid.27255.37 0000 0004 1761 1174 Ministry of Education Frontiers Science Center for Nonlinear Expectations, Research Center for Mathematics and Interdisciplinary Science, Shandong University, 266237 Qingdao, China
6 grid.513236.0 Shanghai Qi Zhi Institute, Shanghai, China
7 https://ror.org/03m01yf64 grid.454828.7 0000 0004 0638 8050 Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence (Fudan University), Ministry of Education, Shanghai, China
8 https://ror.org/013q1eq08 grid.8547.e 0000 0001 0125 2443 Shanghai Key Lab of Intelligent Information Processing and Shanghai Institute of Artificial Intelligence Algorithm, Fudan University, Shanghai, China
9 Zhangjiang Fudan International Innovation Center, Shanghai, China
5 9 2024
5 9 2024
2024
15 7766© The Author(s) 2024
2024
https://creativecommons.org/licenses/by/4.0/ Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
Subject terms

Bioinformatics
Software
Protein sequencing
Computational models
Protein sequence analyses
issue-copyright-statement© Springer Nature Limited 2024
==== Body
pmcCorrection to: Nature Communications 10.1038/s41467-024-46808-5, published online 30 March 2024

The original version of this article omitted an attribution to previous work by Kaminski et al., 2023. This has been added as reference (Ref. 55) in the Methods: “Specifically, inspired by pLM-BLAST [48, 55], PLMAlign also uses per-residue embeddings of the query-target protein pair to calculate the substitution matrix.” and “On the other hand, compared with pLM-BLAST, which uses cosine similarity, PLMAlign employs the dot product similarity and linear gap penalty. This enables PLMAlign to better align remote homology pairs while reducing the algorithm’s complexity to O(mn) to ensure high efficiency. The other differences between the SW/NW algorithm, pLM-BLAST, and PLMAlign are discussed in further detail in Supplementary Table 14.”

In the Code Availability, a declaration of the modification of the pLM-BLAST code has been added: “whose pipeline is modified from pLM-BLAST [48, 55]. pLM-BLAST is available from https://github.com/labstructbioinf/pLM-BLAST under an MIT License that allows the use, copying, modification, merging and publishing of the software, with copyright notice and permission notice included in all copies or substantial portions of the software.”

These have been corrected in both the PDF and HTML versions of the Article.
