PMID- 10403699
OWN - NLM
STAT- MEDLINE
DCOM- 19990917
LR  - 20201209
IS  - 0920-8569 (Print)
IS  - 0920-8569 (Linking)
VI  - 18
IP  - 2
DP  - 1999
TI  - Complete nucleotide sequence of bean pod mottle virus RNA1: sequence comparisons 
      and evolutionary relationships to other comoviruses.
PG  - 129-37
AB  - The complete nucleotide sequence of bean pod mottle comovirus (BPMV) RNA 1 was
      determined. It is 5983 nucleotides long, excluding the poly(A) tail, and encodes 
      a polyprotein of 1850 amino acid (aa) residues. Multiple alignments of the
      deduced aa sequence of BPMV polyprotein with those of cowpea mosaic virus (CPMV),
      red clover mottle virus (RCMV) and cowpea severe mosaic virus (CPSMV) indicated
      that BPMV RNA1 encodes the predicted set of five mature proteins: the equivalent 
      of CPMV 32K protease cofactor, 58K putative helicase, VPg, 24K protease and 87K
      putative RNA-dependent RNA polymerase. Of the four proposed cleavage sites in
      BPMV RNA1 polyprotein, the one at the 32K/58K site (Q/A) is distinct for BPMV
      polyprotein and those at the 58K/VPg and VPg/24K junctions (Q/S and Q/M,
      respectively) are identical in all four comovirus polyproteins. Sequence
      comparison and phylogenetic analysis revealed that BPMV RNA1 is more closely
      related to CPSMV than to CPMV or to RCMV.
FAU - Di, R
AU  - Di R
AD  - Department of Plant Pathology, University of Kentucky, Lexington 40546, USA.
FAU - Hu, C C
AU  - Hu CC
FAU - Ghabrial, S A
AU  - Ghabrial SA
LA  - eng
SI  - GENBANK/U70866
PT  - Comparative Study
PT  - Journal Article
PT  - Research Support, Non-U.S. Gov't
PL  - United States
TA  - Virus Genes
JT  - Virus genes
JID - 8803967
RN  - 0 (RNA, Viral)
RN  - 0 (Viral Core Proteins)
RN  - 0 (Viral Proteins)
RN  - 0 (polyprotein, comovirus)
RN  - EC 2.7.7.48 (RNA-Dependent RNA Polymerase)
RN  - EC 3.6.4.13 (RNA Helicases)
SB  - IM
MH  - Amino Acid Sequence
MH  - Base Sequence
MH  - Comovirus/classification/*genetics
MH  - *Evolution, Molecular
MH  - Fabaceae/virology
MH  - Molecular Sequence Data
MH  - Phylogeny
MH  - Plants, Medicinal
MH  - RNA Helicases/genetics
MH  - RNA, Viral/*analysis
MH  - RNA-Dependent RNA Polymerase/genetics
MH  - Sequence Analysis, RNA
MH  - Sequence Homology, Amino Acid
MH  - Viral Core Proteins/genetics
MH  - Viral Proteins/genetics
EDAT- 1999/07/14 00:00
MHDA- 1999/07/14 00:01
CRDT- 1999/07/14 00:00
PHST- 1999/07/14 00:00 [pubmed]
PHST- 1999/07/14 00:01 [medline]
PHST- 1999/07/14 00:00 [entrez]
AID - 10.1023/a:1008012502470 [doi]
PST - ppublish
SO  - Virus Genes. 1999;18(2):129-37. doi: 10.1023/a:1008012502470.