1  ls
    2  cd ~
    3  ls
    4  whoami
    5  exit
    6  pwd
    7  ls
    8  ll
    9  cd perl5
   10  ll
   11  pwd
   12  cd
   13  pwd
   14  ll /
   15  ll /data
   16  ll /data/
   17  cd
   18  ll /
   19  cd /projects/glygen/scripts/
   20  ll
   21  ll dump-csv-stats.py 
   22  python dump-csv-stats.py 
   23  cd /data/projects/glygen/
   24  ls
   25  cd downloads/
   26  ls
   27  vi NLGPaper-supp.readme.txt 
   28  vi New_readme.txt
   29  rm New_readme.txt 
   30  ls 
   31  cd /data
   32  cd /projects/glygen
   33  ls
   34  cd /data
   35  ls
   36  cd /projects
   37  ls
   38  cd glygen
   39  ls
   40  cd /data/projects/glygen
   41  ls
   42  cd downloads/
   43  ls
   44  cd /generated
   45  cd /data/projects/glygen
   46  ls
   47  cd generated/
   48  ls
   49  cd output
   50  ls
   51  ls -ltr
   52  ll/
   53  ll
   54  cd /data/projects/glygen/generated/output/
   55  ls | grep readme
   56  man vi
   57  ls
   58  man ls
   59  ls -lt
   60  ls -ltr
   61  ls | grep homo
   62  man grep
   63  more homo_sapiens_uniprot_idmapping.readme.txt
   64  cp homo_sapiens_uniprot_idmapping.readme.txt ~/
   65  ll ~/
   66  man rm
   67  vi ~/.bashrc 
   68  more ~/.bashrc 
   69  pwd
   70  exit
   71  cd /data/projects/glygen/generated/output
   72  ls
   73  ls -ltr
   74  emacs ~/temp2
   75  neo ~/temp2
   76  cd /data/projects/glygen/generated/output/
   77  ll
   78  ls -ltr
   79  cd 
   80  vi temp
   81  more temp
   82  cd /data/projects/glygen/generated/output/
   83  ll
   84  ll *.txt
   85  more NLGPaper-S8-GOG_somatic_only.lo
   86  more NLGPaper-S8-GOG_somatic_only.log 
   87  ll | grep Loss of NLinked
   88  cd /data/projects/glygen/generated/output/
   89  ls
   90  ls |grepreadme
   91  ls
   92  cd /projects/glygen/scripts/
   93  ls 
   94  cd /data/projects/glygen/downloads/
   95  ls
   96  cd misc
   97  ls -ltr
   98  cd /projects/glygen/scripts/
   99  ls
  100  cd cd /data/projects/glygen/generated/output/
  101  ls -ltr
  102  cd /data/projects/glygen/generated/output/
  103  ls -ltr
  104  cd projects/glygen/scripts
  105  cd /projects/glygen/scripts/
  106  ls
  107  python dump-csv-stats.py -i /data/projects/glygen/generated/output/NLGPaper-S4-LOG_all_germline.csv
  108  python dump-csv-stats.py -i /data/projects/glygen/generated/output/NLGPaper-S4-LOG_all_germline.csv -d ','
  109  python dump-csv-stats.py -i /data/projects/glygen/downloads/misc/NLGPaper-S4-LOG_all_germline.csv -d ','
  110  python dump-csv-stats.py -i /data/projects/glygen/downloads/misc/Human_Proteome_Glycosyltransferases.csv -d ','
  111  more dump-csv-stats.py
  112  python dump-csv-stats.py -i /data/projects/glygen/generated/output/homo_sapiens_idmapping.csv -d ','
  113  ls
  114  python dump-csv-stats.py -i /data/projects/glygen/generated/output/homo_sapiens_idmapping.csv -d ','
  115  cd /data/projects/glygen/downloads/misc/
  116  ls
  117  cd /data/projects/glygen/downloads/misc/
  118  ls -ltr
  119  cd /data/projects/glygen/downloads/misc/
  120  ls -ltr
  121  python dump-csv-stats.py -i /data/projects/glygen/downloads/misc/NLGPaper-S8-GOG_somatic_only.csv -d ','
  122  cd /projects/glygen/scripts/
  123  python dump-csv-stats.py -i /data/projects/glygen/downloads/misc/NLGPaper-S8-GOG_somatic_only.csv -d ','
  124  more dump-csv-stats.py
  125  vi dump-csv-stats.py
  126  nano dump-csv-stats.py
  127  head /data/projects/glygen/downloads/misc/NLGPaper-S8-GOG_somatic_only.csv
  128  cp dump-csv-stats.py lama-dump-csv-stats.py
  129  cp dump-csv-stats.py ~/dump-csv-stats.py
  130  cd 
  131  nano dump-csv-stats.py 
  132  which python
  133  python -v
  134  python --version
  135  nano dump-csv-stats.py 
  136  python dump-csv-stats.py -i /data/projects/glygen/generated/output/homo_sapiens_idmapping.csv -d ','
  137  ll /data/projects/glygen/generated/output/homo_sapiens_idmapping.csv
  138  nano dump-csv-stats.py
  139  ll /data/projects/glygen/downloads/misc/NLGPaper-S8-GOG_somatic_only.csv
  140  more /data/projects/glygen/downloads/misc/NLGPaper-S8-GOG_somatic_only.csv
  141  nano dump-csv-stats.py
  142  python dump-csv-stats.py -i /data/projects/glygen/generated/output/homo_sapiens_idmapping.csv -d ','
  143  head
  144  head /data/projects/glygen/generated/output/Protein_ID_Mapping.csv
  145  python dump-csv-stats.py -i /data/projects/glygen/downloads/misc/NLGPaper-S8-GOG_somatic_only.csv -d ','
  146  nano dump-csv-stats.py
  147  python dump-csv-stats.py -i /data/projects/glygen/downloads/misc/NLGPaper-S8-GOG_somatic_only.csv -d ','
  148  nano dump-csv-stats.py
  149  python dump-csv-stats.py -i /data/projects/glygen/downloads/misc/NLGPaper-S8-GOG_somatic_only.csv -d ','
  150  nano dump-csv-stats.py
  151  cp dump-csv-stats.py dump-csv-check-fields-count.py 
  152  emacs dump-csv-check-fields-count.py 
  153  nano dump-csv-check-fields-count.py 
  154  python dump-csv-check-fields-count.py -i /data/projects/glygen/downloads/misc/NLGPaper-S8-GOG_somatic_only.csv -d ','
  155  nano dump-csv-check-fields-count.py 
  156  python dump-csv-check-fields-count.py -i /data/projects/glygen/downloads/misc/NLGPaper-S8-GOG_somatic_only.csv -d ','
  157  head -7718 /data/projects/glygen/downloads/misc/NLGPaper-S8-GOG_somatic_only.csv | tail -1
  158  head -1 /data/projects/glygen/downloads/misc/NLGPaper-S8-GOG_somatic_only.csv
  159  ll /data/projects/glygen/downloads/misc/*.csv
  160  python dump-csv-stats.py -i /data/projects/glygen/downloads/misc/Protein_ID_Mapping.csv -d ','
  161  python dump-csv-stats.py -i /data/projects/glygen/generated/output/Protein_ID_Mapping.csv -d ','
  162  python dump-csv-check-fields-count.py -i /data/projects/glygen/generated/output/Protein_ID_Mapping.csv -d ','
  163  head -20867 /data/projects/glygen/generated/output/Protein_ID_Mapping.csv | tail -1
  164  7 /data/projects/glygen/generated/outpu
  165  cd /data/projects/glygen/generated/outpu
  166  cd /data/projects/glygen/generated/output
  167  python dump-csv-check-fields-count.py -i 
  168  ls
  169  ls -ltr
  170  python dump-csv-check-fields-count.py -i /data/projects/glygen/generated/output/Human_protein_centric_ID_Mapping.csv -d','
  171  python dump-csv-check-fields-count.py -i /data/projects/glygen/generated/output/Human_protein_centric_ID_Mapping.csv -d ','
  172  head -20867 /data/projects/glygen/generated/output/Protei
  173  python dump-csv-stats.py -i /data/projects/glygen/generated/output/Human_protein_centric_ID_Mapping.csv -d ','
  174  python dump-csv-check-fields-count.py -i /data/projects/glygen/generated/output/Human_protein_centric_ID_Mapping.csv -d ','
  175  head -1 /data/projects/glygen/generated/output/Human_protein_centric_ID_Mapping.csv
  176  head -2 /data/projects/glygen/generated/output/Human_protein_centric_ID_Mapping.csv
  177  head -9 /data/projects/glygen/generated/output/Human_protein_centric_ID_Mapping.csv | tail -1
  178   
  179  lama
  180  head -6 /data/projects/glygen/generated/output/Human_protein_centric_ID_Mapping.csv
  181  head -4 /data/projects/glygen/generated/output/Human_protein_centric_ID_Mapping.csv
  182  python dump-csv-stats.py -i /data/projects/glygen/generated/output/Human_protein_centric_ID_Mapping.csv -d ','
  183   histroy | grep 'dump-csv-stats.py'
  184   history | grep 'dump-csv-stats.py'
  185   history | grep 'script'
  186  python /projects/glygen/scripts/dump-csv-stats.py -i /data/projects/glygen/generated/output/Human_protein_centric_ID_Mapping.csv -d ','
  187  head -2/data/projects/glygen/generated/output/Human_protein_centric_ID_Mapping.csv -d ','
  188  head -2 /data/projects/glygen/generated/output/Human_protein_centric_ID_Mapping.csv -d ',' 
  189  head -2 /data/projects/glygen/generated/output/Human_protein_centric_ID_Mapping.csv
  190  cd /data/projects/glygen/generated/output
  191  cd /data/projects/glygen/generated/output/
  192  python /projects/glygen/scripts
  193  ls
  194  ls -ltr
  195  cd /data/projects/glygen/generated/output/
  196  ls -ltr
  197  ls
  198  ls -ltr
  199  python dump-csv-stats.py -i /data/projects/glygen/generated/output/Human_protein_centric_ID_Mapping.csv -d ','
  200  python /projects/glygen/scripts/dump-csv-stats.py -i /data/projects/glygen/generated/output/Human_protein_centric_ID_Mapping.csv -d ','
  201  ls
  202  ls -ltr
  203  python /projects/glygen/scripts/dump-csv-stats.py -i /data/projects/glygen/generated/output/Human_protein_centric_ID_Mapping.csv -d ','
  204   python /projects/glygen/scripts/dump-csv-stats.py -i /data/projects/glygen/generated/output/Human_protein_centric_ID_Mapping.csv -d ','
  205   python /projects/glygen/scripts/dump-csv-stats.py -i /data/projects/glygen/generated/output/GOG_Germline.csv.csv -d ','
  206  head -2 /data/projects/glygen/generated/output/Human_protein_centric_ID_Mapping.csv
  207   python /projects/glygen/scripts/dump-csv-stats.py -i /data/projects/glygen/generated/output/Human_protein_centric_ID_Mapping.csv -d ','
  208  head -2 /data/projects/glygen/generated/output/Human_protein_centric_ID_Mapping.csv
  209  ll /projects/glygen/scripts/dump-csv-stats.py
  210  diff ~/dump-csv-stats.py /projects/glygen/scripts/dump-csv-stats.py
  211   python /projects/glygen/scripts/dump-csv-stats.py -i /data/projects/glygen/generated/output/GOG_Germline.csv.csv -d ','
  212   python /projects/glygen/scripts/dump-csv-stats.py -i /data/projects/glygen/generated/output/GOG_Germline.csv -d ','
  213  ll
  214  ll /data/projects/glygen/generated/output/
  215  ll /data/projects/glygen/generated/output/Human_Glycotransferase_Accessions.csv
  216  cp /data/projects/glygen/generated/output/Human_Glycotransferase_Accessions.csv  /data/projects/glygen/generated/output/temp
  217  ll /data/projects/glygen/generated/output/temp
  218  ll /data/projects/glygen/generated/output/Human_Glycotransferase_Accessions.csv
  219  ll /data/projects/glygen/generated/output/testlama.csv 
  220  diff testlama.csv temp 
  221  diff testlama.csv Human_Glycotransferase_Accessions.csv
  222   python /projects/glygen/scripts/dump-csv-stats.py -i Human_Glycotransferase_Accessions.csv -d ','
  223  ll /data/projects/glygen/generated/output/testlama.csv 
  224   python /projects/glygen/scripts/dump-csv-stats.py -i Human_Glycotransferase_Accessions.csv -d ','
  225  ll /data/projects/glygen/generated/output/
  226  rm temp
  227  rm testlama.csv 
  228  ll
  229  ls -ltr
  230   python /projects/glygen/scripts/dump-csv-stats.py -i GOG_Germline.csv -d ','
  231  ls -ltr
  232  cd /data/projects/glygen/generated/output
  233  ls
  234  ls -ltr
  235  python /projects/glygen/scripts/dump-csv-stats.py -i /data/projects/glygen/generated/output/LOG_Germline.csv -d ','
  236  cd /data/projects/glygen/generated/output
  237  ls -ltr
  238  python /projects/glygen/scripts/dump-csv-stats.py -i /data/projects/glygen/generated/output/homo_sapiens_uniprot_idmapping.csv -d ','
  239  cd /data/projects/glygen/generated/output
  240  ls -ltr
  241  python /projects/glygen/scripts/dump-csv-stats.py -i /data/projects/glygen/generated/output/GOG_Somatic.csv -d ','
  242  cd /data/projects/glygen/generated/output
  243  ls -ltr
  244  python /projects/glygen/scripts/dump-csv-stats.py -i /data/projects/glygen/generated/output/NLGPaper-S7-LOG_somatic_only.csv -d ','
  245  cd /data/projects/glygen/generated/output
  246  ls -ltr
  247  python /projects/glygen/scripts/dump-csv-stats.py -i /data/projects/glygen/generated/output/Human_protein_centric_ID_Mapping.csv -d ','
  248  cd /data/projects/glygen/generated/output
  249  ls -ltr
  250  python /projects/glygen/scripts/dump-csv-stats.py -i /data/projects/glygen/generated/output/Human_Proteome_N-Linked_Glycosylation_Positions_Predicted.csv -d ','
  251  cd /data/projects/glygen/generated/output
  252  ls -ltr
  253  python /projects/glygen/scripts/dump-csv-stats.py -i /data/projects/glygen/generated/output/Human_Proteome_N-Linked_Glycosylation_Positions_Experimental.csv -d ','
  254  cd /data/projects/glygen/generated/output
  255  ls -ltr
  256  python /projects/glygen/scripts/dump-csv-stats.py -i /data/projects/glygen/generated/output/UniProt_PDB_sugar_positions_N_Linked.csv -d ','
  257  cd /data/projects/glygen/generated/output
  258  ls -ltr
  259  python /projects/glygen/scripts/dump-csv-stats.py -i /data/projects/glygen/generated/output/UniProt_PDB_sugar_positions_O_Linked.csv -d ','
  260  cd /data/projects/glygen/generated/output
  261  ls -ltr
  262  cd /data/projects/glygen/generated/output
  263  ls -ltr
  264  python /projects/glygen/scripts/dump-csv-stats.py -i /data/projects/glygen/generated/output/GOG_som_three_cancers.csv -d ','
  265  cd /data/projects/glygen/generated/output
  266  ls -ltr
  267  python /projects/glygen/scripts/dump-csv-stats.py -i /data/projects/glygen/generated/output/LOG_som_three_cancers.csv -d ','
  268  cd /data/projects/glygen/generated/output
  269  ls -ltr
  270  python /projects/glygen/scripts/dump-csv-stats.py -i /data/projects/glygen/generated/output/homo_sapiens_glycan_idmapping.csv -d ','
  271  cd /data/projects/glygen/generated/output
  272  ls -ltr
  273  python /projects/glygen/scripts/dump-csv-stats.py -i /data/projects/glygen/generated/output/Glytoucan_GlycomeDB_GlycO_mapping.csv -d ','
  274  cd /data/projects/glygen/generated/output
  275  ls -ltr
  276  cd /data/projects/glygen/generated/output
  277  ls -ltr
  278  cd /data/projects/glygen/downloads/misc/
  279  ls -ltr
  280  ls Readme
  281  scp lama@128.164.35.92:/data/projects/glygen/downloads/misc/-readme.txt .
  282  scp lama@128.164.35.92:/data/projects/glygen/downloads/misc/readme.txt .
  283  scp lama@128.164.35.92:/data/projects/glygen/downloads/misc/*readme.txt .
  284  cd /data/projects/glygen/downloads/misc/
  285  ls -ltr
  286  ls readme
  287  cd /data/projects/glygen/generated/output
  288  ls -ltr
  289  history
  290  history |downlowds
  291  man| history
  292  history > readme.txt