Identification and Provenance fields
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Object ID:
Type ID:human
Name:
Title: -
Version: 1.1
Created: Jan 17, 2018 09:40:17
Created by: Lama Elzohary(lama@gwu.edu)
Modified: -
Modified by: -
Digital Signature:
Verification status:1.1
Publication_status:Draft
Authors:

Description
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This table contains 37,498 germline variants mapping to an NLG and predicted to cause a loss of the consensus NXS/T motif.
 These variants include ONLY germline nsSNVs reported by dbSNP that map to identified NLG positions and cause a loss of the NLG sequon.




Table Headers
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Column Header		Description
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UniProtKB_Acc (Canonical)
Gene_Name: Gene name
Motif_Position :The Position of the "N" in the identified NXS/T sequon
Subsequence:Four-residue sequence about the NXS/T sequon beginning with the "N"
NetNGlyc_Prediction:Likelihood of actual glycosylation at the sequon, as reported by NetNGlyc
Ref :Reference amino acid
Alt:Varied nucleotide
mRNA accession:RefSeq accession for mRNA transcript mapping to variant reported by dbSNP
protein accession:RefSeq accession for protein sequence mapping to variant reported by dbSNP
RefAA:Reference amino acid encoded by position reported by dbSNP
AAPos:Amino acid position encoded by variant position reported by dbSNP
AltAA:Altered amino acid encoded by varant at position reported by dbSNP


Statistics
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UniProtKB_Acc (Canonical) 10585
Gene_Name 10580
Motif_Position 2798
Subsequence 838
NetNGlyc_Prediction 7
Ref: 4
Alt:4
mRNA accession:11919
protein accession:11919
RefAA: 19
AAPos: 2972
AltAA: 20