doc_id	sent_index	relation_id	relation	trigger	trigger_offset	arg_num	arg_base_np	arg_protein	arg_domain	arg_site	arg_sugar	PSource	SiteSource	NProtein	NID	SiteName	sent_text
25745027	3	31	part_of	HDL	240:242	arg1	HDL composition	HDL		HDL composition		OGER	Site	HDL	Q9UNE0	position	In this study, we compared HDL composition and metrics of HDL functionality in patients undergoing hemodialysis (HD) or peritoneal dialysis (PD) with those in healthy controls.
27269631	4	74	part_of	ECM	714:716	arg1	composition	ECM		composition		OGER	Site	ECM	Q13201	position,	Therefore, we aimed to establish a system that can mimic the structural architecture, composition, and biological functions of the ECM for cancer research approaches.
25473280	10	4	part_of	apolipoproteins	1450:1464	arg1	composition	apolipoproteins		composition		PUBTATOR	Site	apolipoproteins	348	position	Regarding composition of complement C3 proteins and apolipoproteins, Au-NPs prepared in dextran solution appeared as a promising drug carrier.
25473280	10	10	part_of	proteins	1437:1444	arg1	composition	complement C3 proteins		composition		OGER	Site	complement C3 proteins	P01024	position	Regarding composition of complement C3 proteins and apolipoproteins, Au-NPs prepared in dextran solution appeared as a promising drug carrier.
24790018	1	10	gly	used	233:236	arg2	Murine lumbar and coccygeal (tail) regions			Murine lumbar and coccygeal (tail) regions						regions	Murine lumbar and coccygeal (tail) regions of spines are commonly used to study cellular signaling of age-related disc diseases, but the tissue-level changes of aging intervertebral discs and vertebrae of each spinal region remain unclear.
28757018	6	11	gly	glycoprotein	1242:1253	arg1	O-linked glycoprotein	O-linked glycoprotein				Fterm		glycoprotein			The infectivity of four NA-sensitive strains was equally reduced by inhibitors of lipid membrane and N-linked glycoprotein but not by an inhibitor of O-linked glycoprotein, indicating that these strains utilize both glycolipid and N-linked glycoprotein.
28757018	6	21	gly	glycoprotein	1193:1204	arg1	N-linked glycoprotein	N-linked glycoprotein				Fterm		glycoprotein			The infectivity of four NA-sensitive strains was equally reduced by inhibitors of lipid membrane and N-linked glycoprotein but not by an inhibitor of O-linked glycoprotein, indicating that these strains utilize both glycolipid and N-linked glycoprotein.
28757018	6	87	gly	glycoprotein	1323:1334	arg1	N-linked glycoprotein	N-linked glycoprotein				Fterm		glycoprotein			The infectivity of four NA-sensitive strains was equally reduced by inhibitors of lipid membrane and N-linked glycoprotein but not by an inhibitor of O-linked glycoprotein, indicating that these strains utilize both glycolipid and N-linked glycoprotein.
26407050	9	64	part_of	AP-X	1203:1206	arg1	only AP-X composite	AP-X		only AP-X composite		PUBTATOR	Site	AP-X	328	composite	When comparing amalgam to the separate composite materials, only AP-X composite showed higher ML (Δ=515 µm×vol%) than amalgam (p=0.034).
27525644	4	50	part_of	EFP	753:755	arg1	the EFP site	EFP		the EFP site		OGER	Site	EFP	Q61510	site	To allow transplantation in the EFP site, we minimized capsule size to 500 ± 17 μm.
26749566	6	22	part_of	ECM	1213:1215	arg1	ECM composition	ECM		ECM composition		OGER	Site	ECM	Q13201	position,	Overall, this study demonstrates the three-way relationship between 3D scaffolds, ECM composition, and stem cell differentiation.
26793973	11	86	gly	His	1493:1495	arg1	the His tag			His	the His tag					His	We then purified the protein with a Ni-chelate column that bound the His tag engineered into the C-terminus of the protein followed by an anion exchange column.
28747404	2	39	gly	glycoprotein	479:490	arg1	135-kDa glycoprotein	135-kDa glycoprotein (Gp135				PUBTATOR		135-kDa glycoprotein (Gp135	482252		Here we report that galectin (Gal)-8 regulates apical-basal polarity of Madin-Darby canine kidney (MDCK) cells via apical targeting of 135-kDa glycoprotein (Gp135).
28917852	0	25	part_of	alginate-keratin	15:30	arg1	Bio-responsive alginate-keratin composite	keratin		Bio-responsive alginate-keratin composite		Fterm	Site	keratin		composite	Bio-responsive alginate-keratin composite nanogels with enhanced drug loading efficiency for cancer therapy.
24026960	5	64	gly	N-glycopeptide	1377:1390	arg2	N-glycopeptide			N-glycopeptide						N-glycopeptide His-Asn-Lactose	Maximum activity was observed at a concentration of 450 μg/ml (747.51 µM) for the N-glycopeptide His-Asn-Lactose with the corresponding zonal inhibition diameters (15 mm; 19 mm; 14 mm; 18 mm; 16 mm; 17 mm) against S. aureus, B. subtilis, S. caprae, E. coli, P. aeruginosa, S. sonnei.
26154421	4	28	part_of	strain	625:630	arg1	a recombinant heavy chain fragment	strain PIC018		a recombinant heavy chain fragment		Fterm	Site	strain PIC018	18417	fragment	METHODOLOGY Here we describe a conjugate vaccine for cholera prepared via squaric acid chemistry from the OSP of V. cholerae O1 Inaba strain PIC018 and a recombinant heavy chain fragment of tetanus toxin (OSP:rTTHc).
25731097	5	33	part_of	starch-GNS	1006:1015	arg1	the HCPT@starch-GNS composite	GNS		the HCPT@starch-GNS composite		OGER	Site	GNS	P15586	composite	Through the nonspecific endocytosis effect, the HCPT@starch-GNS composite was encapsulated into cytoplasm by SW-620 cancer cells.
25710501	6	52	part_of	possessing	907:916	arg1	a plastidial protein AND an N-terminal coiled coil domain	a plastidial protein		an N-terminal coiled coil domain		Fterm	Site	protein		domain	PTST is a plastidial protein possessing an N-terminal coiled coil domain and a C-terminal carbohydrate binding module (CBM).
27708373	3	2	gly	N-	652:653	arg1	sites			sites						sites	Here, we propose a novel bioinformatics method called GlycoMinestruct(http://glycomine.erc.monash.edu/Lab/GlycoMine_Struct/) for improved prediction of human N- and O-linked glycosylation sites by combining sequence and structural features in an integrated computational framework with a two-step feature-selection strategy.
26793973	13	17	gly	glycoprotein	1885:1896	arg1	a secreted glycoprotein	a secreted glycoprotein				Fterm		glycoprotein			After intravenous injection into mice, the protein had a longer plasma half-life than commercially available rhTSG-6 isolated from a mammalian cell lysate, apparently because it was recovered as a secreted glycoprotein.
27718219	3	21	part_of	CA3	756:758	arg1	CA3 regions	CA3		CA3 regions		PUBTATOR	Site	CA3	12350	regions	In this study, we used WFA and the antibody against the core protein of aggrecan (ACAN) to investigate the molecular heterogeneity of aggrecan-based PNNs around five subclasses of parvalbumin-expressing (PV+) γ-aminobutyric acid (GABA)ergic neurons in the CA1 and CA3 regions of the mouse hippocampus.
26508354	1	25	gly	glycoproteins	218:230	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			Hyaluronan and phospholipids play an important role in lubrication in articular joints and provide in combination with glycoproteins exceptionally low friction coefficients.
24959308	5	24	gly	glycoproteins	760:772	arg1	tissue glycoproteins	tissue glycoproteins				Fterm		glycoproteins			In order to perform the study from both serum and tissue glycoproteins in an efficient and high-throughput manner, we indigenously developed and employed lectin microarray integrated on a microfluidic lab-on-a-chip platform.
28693200	5	97	gly	glycoproteins	542:554	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			Compared with the controls, the binding capacity of glycoproteins extracted from sorafenib-treated HCC cells to the lectins Bauhinia purpurea lectin, Dolichos biflorus agglutinin, Euonymus europaeus lectin, Helix aspersa lectin, Helix pomatia lectin, Jacalin, Maclura pomifera lectin and Vicia villosa lectin were enhanced; while, the binding capacities to the lectins Caragana arborescens lectin, Lycopersicon esculentum lectin, Limulus polyphemus lectin, Maackia amurensis lecin I, Phaseolus vulgaris leucoagglutinin, Ricinus communis agglutinin 60, Sambucus nigra lectin and Solanum tuberosum lectin were reduced (spot intensity median/background intensity median ≥2, P<0.05).
28644609	13	30	gly	GalNAc-Tyr	1644:1653	arg1	GalNAc-Tyr modified proteins			Tyr	GalNAc-Tyr modified proteins					Tyr	These results provide the first evidence that GalNAc-Tyr modified proteins and/or peptides may be ligands for hMGL and mMGL-2 and offer unique structures for the design of MGL targeting agents.
27485503	1	28	part_of	PPy	225:227	arg1	polypyrrole (PPy)-Nafion (Nf)-functionalized multi-walled carbon nanotubes (fMWCNTs) nanocomposite	PPy		polypyrrole (PPy)-Nafion (Nf)-functionalized multi-walled carbon nanotubes (fMWCNTs) nanocomposite		OGER	Site	PPy	P01298	nanocomposite	A highly electroactive bio-nanohybrid film of polypyrrole (PPy)-Nafion (Nf)-functionalized multi-walled carbon nanotubes (fMWCNTs) nanocomposite was prepared on the glassy carbon electrode (GCE) by a facile one-step electrochemical polymerization technique followed by chitosan-glucose oxidase (CH-GOx) immobilization on its surface to achieve a high-performance glucose biosensor.
27485503	1	58	part_of	multi-walled	257:268	arg1	polypyrrole (PPy)-Nafion (Nf)-functionalized multi-walled carbon nanotubes (fMWCNTs) nanocomposite	multi		polypyrrole (PPy)-Nafion (Nf)-functionalized multi-walled carbon nanotubes (fMWCNTs) nanocomposite		OGER	Site	multi		nanocomposite	A highly electroactive bio-nanohybrid film of polypyrrole (PPy)-Nafion (Nf)-functionalized multi-walled carbon nanotubes (fMWCNTs) nanocomposite was prepared on the glassy carbon electrode (GCE) by a facile one-step electrochemical polymerization technique followed by chitosan-glucose oxidase (CH-GOx) immobilization on its surface to achieve a high-performance glucose biosensor.
28757018	3	68	gly	glycoprotein	514:525	arg1	glycoprotein	glycoprotein				Fterm		glycoprotein			Here we show that the specific linkage of SA-containing glycan to glycoprotein or glycolipid is an attachment factor used by NA-sensitive porcine G9P[7] PRG9121 and G9P[23] PRG942, bovine G6P[1] NCDV, and canine G3P[3] strains.
26781707	11	58	part_of	milk	1315:1318	arg1	The nutritional composition	milk		The nutritional composition		PUBTATOR	Site	milk	100532204	position	The nutritional composition of the milk substitutes for the first and second stages was as follows: protein: 38 and 26%, fat: 40 and 40%, carbohydrates: 13 and 25%, ash: 6 and 6% and moisture: 3 and 3%, respectively.
25712220	6	3	part_of	K/NaPB	768:773	arg1	same ionic composition	NaPB		same ionic composition		PUBTATOR	Site	NaPB	63908	position	% dextran-75, and same ionic composition of 0.01 M K/NaPB, pH 7.4.
26995354	5	3	gly	glycoproteins	756:768	arg1	Metabolically labeled glycoproteins	Metabolically labeled glycoproteins				Fterm		glycoproteins			Metabolically labeled glycoproteins are then tagged using Click chemistry and enriched with an isotopic recoding biotin probe.
25614493	3	26	part_of	gelatin	622:628	arg1	Hydrolyzed gelatin peptides-b2	gelatin		Hydrolyzed gelatin peptides-b2		Fterm	Site	gelatin		peptides-b2	Hydrolyzed gelatin peptides-b2 at a concentration of 12.5 mg/ml exhibited the highest proliferation ability and increased the expression of Type I procollagen mRNA, which indicated an enhanced collagen synthesis.
25614493	3	69	part_of	Hydrolyzed	611:620	arg1	Hydrolyzed gelatin peptides-b2	Hydrolyzed		Hydrolyzed gelatin peptides-b2		Cterm	Site	Hydrolyzed		peptides-b2	Hydrolyzed gelatin peptides-b2 at a concentration of 12.5 mg/ml exhibited the highest proliferation ability and increased the expression of Type I procollagen mRNA, which indicated an enhanced collagen synthesis.
26140596	3	43	gly	sialylated	549:558	arg1	sialylated Fc glycans				sialylated Fc glycans						Trivalent influenza virus vaccination elicited regulation of anti-hemagglutinin (HA) IgG subclass and Fc glycans, with abundance of sialylated Fc glycans (sFc) predicting quality of vaccine response.
25117250	7	4	gly	residues	1422:1429	arg1	the individual sialyl oligosaccharides			residues in	the individual sialyl oligosaccharides					residues in	They are still retained stably in whole body after 2 h while they showed significantly different in vivo dynamics in the tissue distribution, suggesting that structure/sequence of the neighboring sugar residues in the individual sialyl oligosaccharides might influence the final organ-specific distribution, which should be equivalent to the distribution of sialic acid-recognizing lectins.
27929386	0	1	part_of	Milk	70:73	arg1	Poorer Composition	Milk		Poorer Composition		PUBTATOR	Site	Milk	100532204	position	Higher Levels of Aflatoxin M1 Contamination and Poorer Composition of Milk Supplied by Informal Milk Marketing Chains in Pakistan.
27128252	7	4	gly	fucose-Phe	1258:1267	arg1	the fucose-Phe interaction			Phe	the fucose-Phe interaction					Phe	Inhibition of core fucosylation confirms the contribution of the fucose-Phe interaction to the stabilization.
27496766	3	22	gly	glycoprotein	482:493	arg1	the glycoprotein quality control system	the glycoprotein quality control system				Fterm		glycoprotein			By virtue of this, UGGT1 acts as a folding sensor in the glycoprotein quality control system in the ER.
25612313	12	23	part_of	CNC	2035:2037	arg1	CNC bionanocomposites	CNC		CNC bionanocomposites		OGER	Site	CNC	P32418	bionanocomposites	Electrochemical performance of CNC bionanocomposites were relatively poor, which may be linked to poor gel stability.
27496766	4	23	gly	UGGT1	621:625	arg1	human UGGT2	UGGT1			human UGGT2	PUBTATOR		UGGT1	56886		On the other hand, human UGGT2 (HUGT2) has been believed to be an inactive homolog of human UGGT1 (HUGT1), whereas our recent study discovered its activity as UGGT.
25425657	6	9	part_of	transferrin	1042:1052	arg1	partial amino acid sequences	transferrin		partial amino acid sequences		OGER	Site	transferrin	P02787	sequences	To examine the importance of proximity between antigen epitopes and SSA-binding (glycosylation) sites, we prepared two anti-peptide antibodies against partial amino acid sequences of transferrin.
25425657	6	18	part_of	SSA-binding	927:937	arg1	SSA-binding (glycosylation) sites	SSA		SSA-binding (glycosylation) sites		OGER	Site	SSA	P10155	sites	To examine the importance of proximity between antigen epitopes and SSA-binding (glycosylation) sites, we prepared two anti-peptide antibodies against partial amino acid sequences of transferrin.
27128252	0	29	part_of	CH2	16:18	arg1	the CH2 Domain	CH2		the CH2 Domain		Cterm		CH2			Stabilizing the CH2 Domain of an Antibody by Engineering in an Enhanced Aromatic Sequon.
27305897	5	16	part_of	PRO	918:920	arg1	SYN	SYN		PRO		OGER	AminoAcid	SYN		PRO	At the genus level, the highest Oscillibacter proportion was detected in PRO, the highest Clostridium in LAC and the highest Lactobacillus in SYN; the abundance of Escherichia was lowest in the LAC group.
28634774	1	51	gly	glycoproteins	281:293	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			Among other components of the extracellular matrix (ECM), glycoproteins and glycosaminoglycans (GAGs) have been strongly associated to the retention or misfolding of different proteins inducing the formation of deposits in amyloid diseases.
26304562	14	49	part_of	GP	2544:2545	arg1	GP IIb/IIIa arm	GP IIb		GP IIb/IIIa arm		PUBTATOR		GP IIb	3674		Cost of blood product transfusion was lower with Bivalirudin as compared to Heparin plus GP IIb/IIIa arm (p = 0.01) and with Heparin alone (p = 0.001).
26304562	14	105	part_of	IIb/IIIa	2547:2554	arg1	GP IIb/IIIa arm	GP IIb		GP IIb/IIIa arm		PUBTATOR		GP IIb	3674		Cost of blood product transfusion was lower with Bivalirudin as compared to Heparin plus GP IIb/IIIa arm (p = 0.01) and with Heparin alone (p = 0.001).
26995354	3	10	gly	glycopeptides	551:563	arg2	intact, metabolically labeled glycopeptides			intact, metabolically labeled glycopeptides						glycopeptides	In this protocol, we describe a novel mass-independent chemical glycoproteomics platform for characterizing intact, metabolically labeled glycopeptides from complex proteomes, termed Isotope Targeted Glycoproteomics (IsoTaG).
28952479	1	7	gly	glycoprotein	232:243	arg1	glycoprotein quality	glycoprotein quality				Fterm		glycoprotein			Manipulations of cell surface glycosylation or glycan decoration of selected proteins hold immense potential for exploring structure-activity relations or increasing glycoprotein quality.
28952479	1	25	gly	glycosylation	96:108	arg1	selected proteins	selected proteins				Fterm		proteins			Manipulations of cell surface glycosylation or glycan decoration of selected proteins hold immense potential for exploring structure-activity relations or increasing glycoprotein quality.
28952479	1	55	gly	proteins	143:150	arg1	glycan decoration	proteins			glycan decoration	Fterm		proteins			Manipulations of cell surface glycosylation or glycan decoration of selected proteins hold immense potential for exploring structure-activity relations or increasing glycoprotein quality.
27128252	6	10	part_of	Q295F/Y296A	970:980	arg1	the EAS-stabilized (Q295F/Y296A) IgG1 Fc fragment	Q295F/Y296A) IgG1		the EAS-stabilized (Q295F/Y296A) IgG1 Fc fragment		OGER	Site	Q295F/Y296A) IgG1	P01857	fragment	The crystal structure of the EAS-stabilized (Q295F/Y296A) IgG1 Fc fragment confirms the design principle, i.e., the importance of the GlcNAc1•F295 interaction, and surprisingly reveals that the core fucose attached to GlcNAc1 also engages in an interaction with F295.
27128252	6	35	part_of	IgG1	983:986	arg1	the EAS-stabilized (Q295F/Y296A) IgG1 Fc fragment	Q295F/Y296A) IgG1		the EAS-stabilized (Q295F/Y296A) IgG1 Fc fragment		OGER	Site	Q295F/Y296A) IgG1	P01857	fragment	The crystal structure of the EAS-stabilized (Q295F/Y296A) IgG1 Fc fragment confirms the design principle, i.e., the importance of the GlcNAc1•F295 interaction, and surprisingly reveals that the core fucose attached to GlcNAc1 also engages in an interaction with F295.
25557319	4	51	gly	enzyme	544:549	arg1	The galactose-tolerance	enzyme			The galactose-tolerance	Fterm		enzyme			The galactose-tolerance of the enzyme was also enhanced after the immobilization, which could relieve the inhibitory effect and then tends to be beneficial for the galacto-oligosaccharides (GOS) synthesis.
27987737	6	50	part_of	NPs	912:914	arg1	composition	NPs		composition		OGER	Site	NPs	P0C0P6	position,	The composition, size, structure and magnetic properties of NPs were determined by the particle size analysis (PSA), X-ray diffractometry (XRD), Fourier transform infrared spectroscopy (FTIR) and vibrating sample magnetometer (VSM).
29202734	4	3	part_of	domain	739:744	arg1	multiple fibronectin type III (FN3) domains	domain		multiple fibronectin type III (FN3) domains						domains	In this study, two fragments, the tandem CBM25 domain and the tandem CBM25 with multiple fibronectin type III (FN3) domains of the α-amylase enzyme from Microbacterium aurum, were expressed in the tubers of a wild type potato cultivar (cv.
29202734	4	92	part_of	fibronectin	781:791	arg1	multiple fibronectin type III (FN3) domains	fibronectin		multiple fibronectin type III (FN3) domains		OGER	Site	fibronectin	P02751	domains	In this study, two fragments, the tandem CBM25 domain and the tandem CBM25 with multiple fibronectin type III (FN3) domains of the α-amylase enzyme from Microbacterium aurum, were expressed in the tubers of a wild type potato cultivar (cv.
29202734	4	106	part_of	enzyme	833:838	arg1	multiple fibronectin type III (FN3) domains	-amylase enzyme		multiple fibronectin type III (FN3) domains		PUBTATOR	Site	-amylase enzyme	102577485	domains	In this study, two fragments, the tandem CBM25 domain and the tandem CBM25 with multiple fibronectin type III (FN3) domains of the α-amylase enzyme from Microbacterium aurum, were expressed in the tubers of a wild type potato cultivar (cv.
24663112	6	42	gly	actinosporins	928:940	arg1	A (1)			A (1)						A (1)	As a result, two new O-glycosylated angucyclines, named actinosporins A (1) and B (2), were isolated from the broth culture of Actinokineospora sp.
27268480	4	106	part_of	pigs	739:742	arg1	composition	GTKO pigs		composition		Cterm	Site	GTKO pigs	Q96S52	position	In this study we compare the composition and biophysical characteristics of glutaraldehyde fixed porcine pericardium from standard and GTKO pigs.
26726562	5	27	gly	used	810:813	arg2	The HNTs-g-βCD composites			The HNTs-g-βCD composites						composites	The HNTs-g-βCD composites could be used as a nano adsorbent for methylene blue and a catalyst in the oxidation reaction of benzyl alcohol owing to the unique structure of β-cyclodextrin.
25637355	6	66	part_of	IRF-AP-1	1138:1145	arg1	composite IRF-AP-1 sites	AP-1		composite IRF-AP-1 sites		OGER	Site	AP-1		sites	After LPS stimulation, increased expression of IRF8, other IRFs, and AP-1 family TFs enabled IRF8 binding to thousands of additional regions containing low-affinity multimerized IRF sites and composite IRF-AP-1 sites, which were not premarked by PU.1 and did not contribute to the basal IRF8 cistrome.
25637355	6	80	part_of	IRF	1114:1116	arg1	low-affinity multimerized IRF sites	IRF		low-affinity multimerized IRF sites		OGER	Site	IRF	Q969Q1	sites	After LPS stimulation, increased expression of IRF8, other IRFs, and AP-1 family TFs enabled IRF8 binding to thousands of additional regions containing low-affinity multimerized IRF sites and composite IRF-AP-1 sites, which were not premarked by PU.1 and did not contribute to the basal IRF8 cistrome.
25637355	6	43	part_of	containing	1077:1086	arg1	additional regions AND low-affinity multimerized IRF sites			sites						sites	After LPS stimulation, increased expression of IRF8, other IRFs, and AP-1 family TFs enabled IRF8 binding to thousands of additional regions containing low-affinity multimerized IRF sites and composite IRF-AP-1 sites, which were not premarked by PU.1 and did not contribute to the basal IRF8 cistrome.
25614493	0	28	part_of	gelatin	90:96	arg1	hydrolyzed gelatin peptide	gelatin		hydrolyzed gelatin peptide		Fterm	Site	gelatin		peptide	The bioactive composite film prepared from bacterial cellulose and modified by hydrolyzed gelatin peptide.
28614672	8	39	gly	nonfucosylated	1431:1444	arg1	nonfucosylated neutral sugars				nonfucosylated neutral sugars						The total HMO concentration and HMOs containing fucose, sialic acid, and nonfucosylated neutral sugars were significantly ( p < .05) less in retort sterilized compared with Holder pasteurized samples.
28614672	8	66	gly	containing	1395:1404	arg1	HMOs AND fucose	HMOs			fucose	OGER		HMOs	P00540		The total HMO concentration and HMOs containing fucose, sialic acid, and nonfucosylated neutral sugars were significantly ( p < .05) less in retort sterilized compared with Holder pasteurized samples.
28614672	8	66	gly	containing	1395:1404	arg1	HMOs AND sialic acid	HMOs			sialic acid	OGER		HMOs	P00540		The total HMO concentration and HMOs containing fucose, sialic acid, and nonfucosylated neutral sugars were significantly ( p < .05) less in retort sterilized compared with Holder pasteurized samples.
28614672	8	66	gly	containing	1395:1404	arg1	HMOs AND nonfucosylated neutral sugars	HMOs			nonfucosylated neutral sugars	OGER		HMOs	P00540		The total HMO concentration and HMOs containing fucose, sialic acid, and nonfucosylated neutral sugars were significantly ( p < .05) less in retort sterilized compared with Holder pasteurized samples.
25297114	2	22	part_of	AP-X	456:459	arg1	Clearfil AP-X composite	Clearfil AP-X		Clearfil AP-X composite		PUBTATOR	Site	Clearfil AP-X	328	composite	Sixty enamel-dentin blocks were restored with 6 different restoration materials with or without adhesives (n = 10 per group) with a gap: 1) Clearfil AP-X composite, 2) Clearfil AP-X composite + SE Bond, 3) Clearfil AP-X composite + ProtectBond, 4) Filtek Silorane composite, 5) Filtek Silorane composite + Silorane System adhesive, or 6) Tytin amalgam.
25297114	2	33	part_of	Clearfil	381:388	arg1	1) Clearfil AP-X composite	Clearfil AP-X		1) Clearfil AP-X composite		PUBTATOR	Site	Clearfil AP-X	328	composite	Sixty enamel-dentin blocks were restored with 6 different restoration materials with or without adhesives (n = 10 per group) with a gap: 1) Clearfil AP-X composite, 2) Clearfil AP-X composite + SE Bond, 3) Clearfil AP-X composite + ProtectBond, 4) Filtek Silorane composite, 5) Filtek Silorane composite + Silorane System adhesive, or 6) Tytin amalgam.
25297114	2	37	part_of	Clearfil	409:416	arg1	Clearfil AP-X composite	Clearfil AP-X		Clearfil AP-X composite		PUBTATOR	Site	Clearfil AP-X	328	composite	Sixty enamel-dentin blocks were restored with 6 different restoration materials with or without adhesives (n = 10 per group) with a gap: 1) Clearfil AP-X composite, 2) Clearfil AP-X composite + SE Bond, 3) Clearfil AP-X composite + ProtectBond, 4) Filtek Silorane composite, 5) Filtek Silorane composite + Silorane System adhesive, or 6) Tytin amalgam.
25297114	2	80	part_of	Clearfil	447:454	arg1	Clearfil AP-X composite	Clearfil AP-X		Clearfil AP-X composite		PUBTATOR	Site	Clearfil AP-X	328	composite	Sixty enamel-dentin blocks were restored with 6 different restoration materials with or without adhesives (n = 10 per group) with a gap: 1) Clearfil AP-X composite, 2) Clearfil AP-X composite + SE Bond, 3) Clearfil AP-X composite + ProtectBond, 4) Filtek Silorane composite, 5) Filtek Silorane composite + Silorane System adhesive, or 6) Tytin amalgam.
25297114	2	90	part_of	AP-X	390:393	arg1	1) Clearfil AP-X composite	Clearfil AP-X		1) Clearfil AP-X composite		PUBTATOR	Site	Clearfil AP-X	328	composite	Sixty enamel-dentin blocks were restored with 6 different restoration materials with or without adhesives (n = 10 per group) with a gap: 1) Clearfil AP-X composite, 2) Clearfil AP-X composite + SE Bond, 3) Clearfil AP-X composite + ProtectBond, 4) Filtek Silorane composite, 5) Filtek Silorane composite + Silorane System adhesive, or 6) Tytin amalgam.
25297114	2	93	part_of	AP-X	418:421	arg1	Clearfil AP-X composite	Clearfil AP-X		Clearfil AP-X composite		PUBTATOR	Site	Clearfil AP-X	328	composite	Sixty enamel-dentin blocks were restored with 6 different restoration materials with or without adhesives (n = 10 per group) with a gap: 1) Clearfil AP-X composite, 2) Clearfil AP-X composite + SE Bond, 3) Clearfil AP-X composite + ProtectBond, 4) Filtek Silorane composite, 5) Filtek Silorane composite + Silorane System adhesive, or 6) Tytin amalgam.
26153451	0	51	gly	aglycosylated	27:39	arg1	aglycosylated IgG Fc variants	aglycosylated IgG Fc variants				Fterm		variants			Structural consequences of aglycosylated IgG Fc variants evolved for FcγRI binding.
25614493	4	46	part_of	Hydrolyzed	824:833	arg1	Hydrolyzed gelatin peptides	Hydrolyzed		Hydrolyzed gelatin peptides		Cterm	Site	Hydrolyzed		peptides	Hydrolyzed gelatin peptides protected Detroit 551 cells from 2,2'-azobis(2-amidinopropane) dihydrochloride-induced oxidative damage and increased cell viability.
25614493	4	84	part_of	gelatin	835:841	arg1	Hydrolyzed gelatin peptides	gelatin		Hydrolyzed gelatin peptides		Fterm	Site	gelatin		peptides	Hydrolyzed gelatin peptides protected Detroit 551 cells from 2,2'-azobis(2-amidinopropane) dihydrochloride-induced oxidative damage and increased cell viability.
24026960	7	69	gly	N-glycopeptide	1848:1861	arg2	our potent small chain N-glycopeptide			our potent small chain N-glycopeptide						N-glycopeptide	Further in vivo testing and clinical studies will make sure to position our potent small chain N-glycopeptide in the arsenal of new broad spectrum anti-gram positive and negative agent.
25614493	6	79	part_of	gelatin	1181:1187	arg1	hydrolyzed gelatin peptides	gelatin		hydrolyzed gelatin peptides		Fterm	Site	gelatin		peptides	The release of hydrolyzed gelatin peptides in bacterial cellulose film was slower than that in hydroxylpropylmethyl cellulose-modified bacterial cellulose and dried fabricated biofilm; thus, bacterial cellulose film and hydroxylpropylmethyl cellulose-modified bacterial cellulose and dried fabricated biofilm are suitable candidates for applications in delayed release type and rapid release type biofilms, respectively.
27318177	6	12	gly	glycopeptides	1206:1218	arg2	144/466 unique N-linked and 10/97 unique O-linked intact glycopeptides			144/466 unique N-linked and 10/97 unique O-linked intact glycopeptides						glycopeptides	Besides, global site-specific characterization of the N- and O-linked glycan heterogeneity in the two life stages of T. cruzi was achieved by intact glycopeptide analysis, revealing 144/466 unique N-linked and 10/97 unique O-linked intact glycopeptides in epimastigotes/trypomastigotes, respectively.
27318177	6	125	gly	glycopeptide	1116:1127	arg2	intact glycopeptide analysis			intact glycopeptide analysis						glycopeptide	Besides, global site-specific characterization of the N- and O-linked glycan heterogeneity in the two life stages of T. cruzi was achieved by intact glycopeptide analysis, revealing 144/466 unique N-linked and 10/97 unique O-linked intact glycopeptides in epimastigotes/trypomastigotes, respectively.
24927271	4	62	gly	heterogeneity	714:726	arg1	individual domains			individual domains						domains	For this purpose, a rapid and informative methodology was developed to examine the heterogeneity of individual domains in mAb products.
26949374	5	14	gly	LCN2	832:835	arg1	the different N-glycan patterns	LCN2			the different N-glycan patterns	PUBTATOR		LCN2	16819		Endo- and exoglycosidases were used to investigate the different N-glycan patterns of LCN2.
25240021	5	55	gly	KIS12-7	808:814	arg1	The cell-wall peptidoglycan	KIS12-7			The cell-wall peptidoglycan	Cterm		KIS12-7			The cell-wall peptidoglycan of strain KIS12-7(T) was of the type B2 and the acyl type was acetyl.
25731097	7	12	part_of	starch-GNS	1419:1428	arg1	the starch-GNS composite	GNS		the starch-GNS composite		OGER	Site	GNS	P15586	composite	Therefore, the starch-GNS composite could be used as an ideal nano-carrier for drug delivery and offered a new avenue for broadening the application of graphene in biomedicine.
25315601	0	4	part_of	lignin	81:86	arg1	lignin composition	lignin		lignin composition		Fterm	Site	lignin		position	Mutation of the inducible ARABIDOPSIS THALIANA CYTOCHROME P450 REDUCTASE2 alters lignin composition and improves saccharification.
25614493	2	3	part_of	gelatin	593:599	arg1	the other hydrolyzed gelatin peptides	gelatin		the other hydrolyzed gelatin peptides		Fterm	Site	gelatin		peptides	The highest oxygen radical absorbance capacity was observed in hydrolyzed gelatin peptides-b2, which contained more nonpolar amino acids than the other hydrolyzed gelatin peptides.
25614493	2	80	part_of	gelatin	504:510	arg1	hydrolyzed gelatin peptides-b2	gelatin		hydrolyzed gelatin peptides-b2		Fterm	Site	gelatin		peptides-b2	The highest oxygen radical absorbance capacity was observed in hydrolyzed gelatin peptides-b2, which contained more nonpolar amino acids than the other hydrolyzed gelatin peptides.
25710501	6	52	gly	possessing	907:916	arg1	a plastidial protein AND a C-terminal carbohydrate binding module	a plastidial protein		an N-terminal coiled coil domain	a C-terminal carbohydrate binding module	Fterm	Site	protein		domain	PTST is a plastidial protein possessing an N-terminal coiled coil domain and a C-terminal carbohydrate binding module (CBM).
27128252	4	86	part_of	IgG1	737:740	arg1	the purified IgG1 Fc fragment	IgG1		the purified IgG1 Fc fragment		OGER	Site	IgG1	P01857	fragment	We stabilized the CH2 domain by engineering an enhanced aromatic sequon (EAS) into the N-glycosylated C'E loop and observed a 4.8 °C increase in the melting temperature of the purified IgG1 Fc fragment.
27318177	5	77	gly	glycoproteins	873:885	arg1	170 and 334 glycoproteins	170 and 334 glycoproteins				Fterm		glycoproteins			Among them, 170 and 334 glycoproteins were exclusively identified in epimastigotes and trypomastigotes, respectively.
25731097	4	79	gly	used	900:903	arg2	the HCPT@starch-GNS composite			the HCPT@starch-GNS composite						composite	After the loading of the commonly used anticancer drug hydroxycamptothecin (HCPT) via physisorption on starch-GNS, the HCPT@starch-GNS composite exhibited a high drug loading capacity and was therefore used for cellular imaging and drug delivery studies.
25731097	7	61	gly	used	1449:1452	arg2	the starch-GNS composite			the starch-GNS composite						composite	Therefore, the starch-GNS composite could be used as an ideal nano-carrier for drug delivery and offered a new avenue for broadening the application of graphene in biomedicine.
25316289	9	57	part_of	enzyme	1192:1197	arg1	the parasite	enzyme		the parasite		Fterm	Site	enzyme		parasite	UDP-N-acetyl-glucosamine pyrophosphorylase, the other UTP-related enzyme in the parasite, neither used galactose-1-phosphate nor was affected by redox modification.
25425657	1	6	gly	α2,6-sialylated	194:208	arg1	α2,6-sialylated glycan epitopes			α2,6-sialylated glycan epitopes							We previously found that a lectin, Sambucus sieboldiana agglutinin (SSA), bound to α2,6-sialylated glycan epitopes on transferrin and inhibited anti-transferrin antibody binding to the antigen in ELISA (SSA inhibition).
25425657	1	49	gly	epitopes	217:224	arg1	transferrin	transferrin			epitopes	OGER		transferrin	P02787		We previously found that a lectin, Sambucus sieboldiana agglutinin (SSA), bound to α2,6-sialylated glycan epitopes on transferrin and inhibited anti-transferrin antibody binding to the antigen in ELISA (SSA inhibition).
25703680	6	41	gly	glycosylation	939:951	arg2	specific glycosylation sites			specific glycosylation sites						sites	From the model, the substrate binding cleft of the enzyme was redesigned in a manner that preferentially hydrolyzes glycans at specific glycosylation sites of triterpenoids.
26949374	0	86	gly	glycosylated	101:112	arg1	glycosylated Lipocalin 2	glycosylated Lipocalin 2				OGER		Lipocalin 2	P80188		Lipopolysaccharide-induced inflammation or unilateral ureteral obstruction yielded multiple types of glycosylated Lipocalin 2.
29137796	7	60	part_of	s-PBI/cellulose/silica	1179:1200	arg1	the s-PBI/cellulose/silica nanocomposites	PBI		the s-PBI/cellulose/silica nanocomposites		OGER	Site	PBI	Q9NRW3	nanocomposites	The conductivities of the s-PBI/cellulose/silica nanocomposites were slightly lower than the pure s-PBI.
25582509	7	35	gly	glycopeptides	1796:1808	arg2	glycopeptides			glycopeptides						glycopeptides	Taken together, these findings illustrate the influence of charge carrier over the energy-resolved vibrational activation/dissociation characteristics of glycopeptides, and serve to suggest potential strategies that exploit the analytically useful features uniquely afforded by specific charge carriers or combinations thereof.
29281815	0	34	part_of	Gut	38:40	arg1	Impact Gut Microbiota Composition	Impact Gut		Impact Gut Microbiota Composition		OGER	Site	Impact Gut	Q9P2X3	position	The NLR Protein NLRP6 Does Not Impact Gut Microbiota Composition.
29281815	0	38	part_of	Impact	31:36	arg1	Impact Gut Microbiota Composition	Impact Gut		Impact Gut Microbiota Composition		OGER	Site	Impact Gut	Q9P2X3	position	The NLR Protein NLRP6 Does Not Impact Gut Microbiota Composition.
25425657	6	53	gly	glycosylation	940:952	arg2	SSA-binding (glycosylation) sites			SSA-binding (glycosylation) sites						sites	To examine the importance of proximity between antigen epitopes and SSA-binding (glycosylation) sites, we prepared two anti-peptide antibodies against partial amino acid sequences of transferrin.
28624360	1	62	gly	heparin+glycoprotein	344:363	arg1	heparin+glycoprotein IIb/IIIa inhibitors	heparin+glycoprotein IIb/IIIa inhibitors				Fterm		heparin+glycoprotein			BACKGROUND Studies have shown reduction in major bleeding with trans-radial intervention (TRI) compared with trans-femoral intervention (TFI), and with use of bivalirudin compared with heparin+glycoprotein IIb/IIIa inhibitors (GPI).
27318177	7	107	gly	glycoproteins	1357:1369	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			Conclusively, this study documents the significant T. cruzi stage-specific expression of glycoproteins that can help to better understand the T. cruzi phenotype and response caused by the interaction with different hosts during its complex life cycle.
28659516	2	18	part_of	PTh/RHA	700:706	arg1	pure PTh/RHA composite	PTh		pure PTh/RHA composite		OGER	Site	PTh	Q86Y79	composite	The synthesized nanoparticles were characterized by scanning electron microscopy (SEM), transmission electron microscopy (TEM) and Fourier transform infrared spectroscopy (FTIR), and the synthesized nanocomposite adsorbents were applied as an efficient sorbent for Pb(II) ion removal from contaminated water and the removal efficiency was compared to pure PTh/RHA composite.
28757018	1	1	part_of	domain	227:232	arg1	SAs	SAs		domain		OGER	Site	SAs	Q12999	domain	Group A rotaviruses (RVAs) are divided into neuraminidase (NA)-sensitive and NA-insensitive strains depending upon their binding affinity to the VP8* domain in the terminal sialic acids (SAs) of cell surface carbohydrates.
25666711	2	12	part_of	endolysin	466:474	arg1	N-terminal catalytic and C-terminal cell wall binding domains	D29 endolysin		N-terminal catalytic and C-terminal cell wall binding domains		OGER	Site	D29 endolysin	Q9H777	domains	We have demonstrated previously that the interaction between N-terminal catalytic and C-terminal cell wall binding domains of mycobacteriophage D29 endolysin makes the enzyme inactive in Escherichiacoli.
28911187	6	31	gly	α-galacto-oligosaccharides	784:809	arg1	BF052 strain	strain			α-galacto-oligosaccharides	Fterm		strain			This research highlights relevant genes involving in its adaptive responses to industrial and/or environmental stresses and utilization of α-galacto-oligosaccharides in BF052 strain compared with other representative bifidobacterial genomes.
28644609	8	40	gly	GalNAc-Tyr	1205:1214	arg1	GalNAc-Tyr determinants			Tyr	GalNAc-Tyr determinants					Tyr	Both hMGL and mMGL-2 bound tightly to GalNAc-Tyr determinants.
29068272	8	32	gly	l-arabinose	1000:1010	arg1	phenylalanine			phenylalanine	phenylalanine		AminoAcid			phenylalanine	Strain FLL521T showed physiological and biochemical differences with the related strains in the Voges-Proskauer test, hydrolysis of l-arginine, utilization of d-mannose, inositol, phenylalanine and acid production from l-arabinose.
25117226	3	13	gly	MUC1	492:495	arg1	YMB-S, N-linked glycan structures	MUC1			YMB-S, N-linked glycan structures	PUBTATOR		MUC1	4582		We demonstrate lectin affinity chromatographic methods for determining O-linked glycan structures of MUC1 purified from a breast cancer cell line, YMB-S, N-linked glycan structures of serum prostate-specific antigen from prostate cancer, and serum alkaline phosphatases from choriocarcinoma.
25117226	3	13	gly	MUC1	492:495	arg1	O-linked glycan structures	MUC1			O-linked glycan structures	PUBTATOR		MUC1	4582		We demonstrate lectin affinity chromatographic methods for determining O-linked glycan structures of MUC1 purified from a breast cancer cell line, YMB-S, N-linked glycan structures of serum prostate-specific antigen from prostate cancer, and serum alkaline phosphatases from choriocarcinoma.
25117226	3	20	gly	antigen	599:605	arg1	YMB-S, N-linked glycan structures	prostate-specific antigen			YMB-S, N-linked glycan structures	PUBTATOR		prostate-specific antigen	354		We demonstrate lectin affinity chromatographic methods for determining O-linked glycan structures of MUC1 purified from a breast cancer cell line, YMB-S, N-linked glycan structures of serum prostate-specific antigen from prostate cancer, and serum alkaline phosphatases from choriocarcinoma.
25117226	3	20	gly	antigen	599:605	arg1	O-linked glycan structures	prostate-specific antigen			O-linked glycan structures	PUBTATOR		prostate-specific antigen	354		We demonstrate lectin affinity chromatographic methods for determining O-linked glycan structures of MUC1 purified from a breast cancer cell line, YMB-S, N-linked glycan structures of serum prostate-specific antigen from prostate cancer, and serum alkaline phosphatases from choriocarcinoma.
29129632	2	59	part_of	NCs	455:457	arg1	composition	NCs		composition		OGER	Site	NCs		position,	The crystalline phase, morphology, composition, particle size and optical absorption properties of the synthesized ZnO-C NCs were systematically investigated by various contemporary methods.
26726562	5	13	part_of	HNTs-g-βCD	779:788	arg1	The HNTs-g-βCD composites	CD		The HNTs-g-βCD composites		PUBTATOR	Site	CD	65057	composites	The HNTs-g-βCD composites could be used as a nano adsorbent for methylene blue and a catalyst in the oxidation reaction of benzyl alcohol owing to the unique structure of β-cyclodextrin.
28260782	4	20	gly	composition	521:531	arg1	acetylated sugars			position,	acetylated sugars					position,	Cell wall composition, detailed xylan structure characterization and enzyme kinetics and activity assays on acetylated sugars and xylooligosaccharides demonstrate that BS1 is an esterase that cleaves acetyl moieties from the xylan backbone at O-2 and O-3 positions of xylopyranosyl residues.
28260782	4	20	gly	composition	521:531	arg1	xylooligosaccharides			position,	xylooligosaccharides					position,	Cell wall composition, detailed xylan structure characterization and enzyme kinetics and activity assays on acetylated sugars and xylooligosaccharides demonstrate that BS1 is an esterase that cleaves acetyl moieties from the xylan backbone at O-2 and O-3 positions of xylopyranosyl residues.
28039140	2	50	part_of	enzymes	287:293	arg1	the loop regions	enzymes		the loop regions		Fterm	Site	enzymes		regions	However, the important roles of the loop regions of GH12 enzymes in substrate specificity and catalytic efficiency remain poorly understood.
25032222	9	83	gly	glycosylation	1426:1438	arg1	ICAM-1 transmembrane protein	ICAM-1 transmembrane protein				Fterm		protein			Taken together, silibinin inhibits ICAM-1 expression and its function through altered O-linked glycosylation in NF-κB and STAT1 signaling pathways and decreases the N-linked glycosylation of ICAM-1 transmembrane protein in proinflammatory cytokine-stimulated ARPE-19 cells.
27525644	6	74	part_of	EFP	1312:1314	arg1	the EFP site	EFP		the EFP site		OGER	Site	EFP	Q61510	site	RESULTS We found improved engraftment of fully allogeneic BALB/c islets in Micro capsules transplanted in the EFP (median reversal time [MRT], 1 day) versus the IP site (MRT, 5 days; P < 0.01) in diabetic C57BL/6 mice and of Micro encapsulated (MRT, 8 days) versus naked (MRT, 36 days; P < 0.01) baboon islets transplanted in the EFP site.
25712388	7	56	part_of	polymer-ECM	1071:1081	arg1	The polymer-ECM composite	ECM		The polymer-ECM composite		PUBTATOR	Site	ECM	22915	composite	The polymer-ECM composite significantly reduced platelet adhesion (67.4±8.2% and 82.7±9.6% reduction relative to untreated ECM using one of two processing temperatures, 37°C or 45°C, respectively); inhibited whole blood clotting (85.9±4.3% and 87.0±11.9% reduction relative to untreated ECM at 37°C or 45°C processing temperature, respectively); and supported endothelial cell-and to a lesser extent smooth muscle cell-adhesion in vitro.
27525644	7	99	part_of	EFP	1574:1576	arg1	the EFP site	EFP		the EFP site		OGER	Site	EFP	Q14258	site	Although in vitro viability and functionality of islets within MicroMix and Double capsules were comparable to Micro, addition of PEG to ALG in MicroMix capsules improved engraftment of allogeneic islets in the IP site, but resulted deleterious in the EFP site, probably due to lower biocompatibility.
25296561	14	150	part_of	ECM	2388:2390	arg1	molecular composition	ECM		molecular composition		OGER	Site	ECM	Q13201	position	CONCLUSIONS Our results suggest an alteration of molecular composition and mechanical properties of the newly formed ECM in subchondral bone cocultures.
25817398	1	4	gly	mannoproteins	167:179	arg1	carbohydrate composition	mannoproteins			carbohydrate composition	Fterm		mannoproteins			Significant differences in carbohydrate composition of mannoproteins obtained from yeast and hyphal cell walls of Candida albicans (serotypes A and B) were found.
27188244	8	129	gly	used	1660:1663	arg2	multilayer composition			multilayer composition						position	Overall, multilayer composition can be used to direct cell-matrix interactions, and hence stem cell fates showing for the first time that PEMs made of biogenic polyelectrolytes undergo significant remodeling of terminal protein layers, which seems to enable cells to form a more adequate extracellular matrix-like environment.
26905395	6	22	gly	RS-7-4	767:772	arg1	The peptidoglycan type	RS-7-4			The peptidoglycan type	Cterm		RS-7-4			The peptidoglycan type of strain RS-7-4(T) was found to be A4α L-Lys-L-Thr-D-Asp.
25425657	2	61	gly	α2,6-sialylated	416:430	arg1	α2,6-sialylated transferrin	α2,6-sialylated transferrin				OGER		α2,6-sialylated transferrin	P02787		Here we report that SSA inhibition is applicable to immunohistochemistry, localizing α2,6-sialylated transferrin in the liver.
25617840	5	20	part_of	AmyB	796:799	arg1	the same NH2-terminal amino acid sequence residues	AmyB		the same NH2-terminal amino acid sequence residues		OGER	Site	AmyB	P10243	residues	AmyC was also noted to display the same NH2-terminal amino acid sequence residues and approximately the same physico-chemical properties of AmyA and AmyB, to exhibit maximum activity at pH 5.6 and 60 °C, and to produce maltose and maltotriose as major starch hydrolysis end-products.
25582509	5	67	gly	glycopeptides	1287:1299	arg2	the various doubly sodiated glycopeptides			the various doubly sodiated glycopeptides						glycopeptides	By contrast, the various doubly sodiated glycopeptides were found to dissociate over a significantly higher but narrow range of collision energies, and exhibited only glycan cleavages.
27896935	5	70	part_of	containing	915:924	arg1	rMAP AND tyrosine residues	rMAP		tyrosine residues		Cterm	AminoAcid	rMAP		tyrosine residues	The distinguishing water (or blood) resistance of the binder originates from sandcastle worm-inspired complex coacervation using negatively charged hyaluronic acid (HA) and a positively charged recombinant mussel adhesive protein (rMAP) containing tyrosine residues.
27896935	5	70	part_of	containing	915:924	arg1	a positively charged recombinant mussel adhesive protein AND tyrosine residues	a positively charged recombinant mussel adhesive protein		tyrosine residues		Fterm	AminoAcid	protein		tyrosine residues	The distinguishing water (or blood) resistance of the binder originates from sandcastle worm-inspired complex coacervation using negatively charged hyaluronic acid (HA) and a positively charged recombinant mussel adhesive protein (rMAP) containing tyrosine residues.
28407595	4	10	gly	oxidase	544:550	arg1	a his-tag	cytochrome c oxidase			a his-tag	OGER		cytochrome c oxidase			As an example we employed cytochrome c oxidase from P. denitrificans with a his-tag fused to the C-terminus of subunitI.
25612313	4	47	part_of	graphene-nanometal-enzyme	657:681	arg1	graphene-nanometal-enzyme composites	enzyme		graphene-nanometal-enzyme composites		Fterm	Site	enzyme		composites	This study compares the performance of four different hydrogels used as protein encapsulants in a mediator-free biosensor based on graphene-nanometal-enzyme composites.
27708373	5	1	gly	N-	1194:1195	arg1	sites			sites						sites	We applied GlycoMinestruct to screen the human structural proteome and obtained high-confidence predictions for N- and O-linked glycosylation sites.
27744146	2	27	part_of	traits	340:345	arg1	carcass traits and meat fatty acid (FA) composition	traits		carcass traits and meat fatty acid (FA) composition		OGER	Site	traits	Q96CJ1	position,	The effects of diet on growth, carcass traits and meat fatty acid (FA) composition, with emphasis on biohydrogenation intermediates were evaluated.
26289219	1	31	part_of	chitosan-cis-aconitic	135:155	arg1	a magnetic chitosan-cis-aconitic anhydride-doxorubicin nanocomposite	cis		a magnetic chitosan-cis-aconitic anhydride-doxorubicin nanocomposite		OGER	Site	cis	Q9NSE2	nanocomposite	We prepared a magnetic chitosan-cis-aconitic anhydride-doxorubicin nanocomposite, denoted by MCS-CAA-DOX.
27318177	4	15	gly	N-glycosylation	760:774	arg2	1306 N-glycosylation sites			1306 N-glycosylation sites						sites	Following deglycosylation, a total of 1306 N-glycosylation sites in NxS/T/C motifs were identified from 690 T. cruzi glycoproteins.
27318177	4	65	gly	glycoproteins	834:846	arg1	690 T. cruzi glycoproteins	690 T. cruzi glycoproteins				Fterm		glycoproteins			Following deglycosylation, a total of 1306 N-glycosylation sites in NxS/T/C motifs were identified from 690 T. cruzi glycoproteins.
27220431	2	32	part_of	mRNA	428:431	arg1	the long 5'-untranslated region	VEGF mRNA		the long 5'-untranslated region		PUBTATOR	Site	VEGF mRNA	7422	region	Ribosomes specifically scan from 5' to 3' CUG initiation codon in the long 5'-untranslated region (5'-UTR) of the VEGF mRNA, resulting in the generation of high mol wt VEGF isoform [call large VEGF (L-VEGF)].
24687547	3	20	part_of	precursors	677:686	arg1	deposition	precursors		deposition		Fterm	Site	precursors		position	HA/chitosan nanohybrid coatings have been fabricated on PCFFs according to the following stages: (i) deposition of chitosan/calcium phosphate precursors on PCFFs; and (ii) hydrothermal transformation of the calcium phosphate precursors in chitosan matrix into HA nanocrystals.
24687547	3	65	part_of	precursors	594:603	arg1	deposition	precursors		deposition		Fterm	Site	precursors		position	HA/chitosan nanohybrid coatings have been fabricated on PCFFs according to the following stages: (i) deposition of chitosan/calcium phosphate precursors on PCFFs; and (ii) hydrothermal transformation of the calcium phosphate precursors in chitosan matrix into HA nanocrystals.
25056822	8	27	gly	had	970:972	arg1	HF1 AND decreased plasma lipopolysaccharide	HF1			decreased plasma lipopolysaccharide	OGER		HF1	P08603		HF1 and HP1 offspring had decreased plasma lipopolysaccharide compared with C1.
25056822	8	27	gly	had	970:972	arg1	HP1 AND decreased plasma lipopolysaccharide	HP1			decreased plasma lipopolysaccharide	OGER		HP1	P59665		HF1 and HP1 offspring had decreased plasma lipopolysaccharide compared with C1.
25056822	0	50	part_of	composition	73:83	arg1	rat dams	dams		composition		OGER	Site	dams	Q9Y6J3	position	Maternal high-protein or high-prebiotic-fiber diets affect maternal milk composition and gut microbiota in rat dams and their offspring.
25565815	2	13	part_of	Ppy/CS	614:619	arg1	the growing Ppy/CS composite	Ppy		the growing Ppy/CS composite		OGER	Site	Ppy	P01298	composite	This method enables the room temperature electrosynthesis of BNC film consisting of ZnO NPs incorporated within the growing Ppy/CS composite.
27318177	3	18	gly	glycopeptide	579:590	arg2	glycopeptide			glycopeptide						glycopeptide	In this study, comprehensive glycoprofiling analysis was performed in the epimastigote and trypomastigote stages of T. cruzi using two glycopeptide enrichment strategies, lectin-based and hydrophilic interaction liquid chromatography, followed by high resolution LC-MS/MS.
24026960	1	2	gly	glycopeptides	191:203	arg2	N-linked and O-linked glycopeptides			N-linked and O-linked glycopeptides						glycopeptides	Our objective is to synthesize the smaller chain N-linked and O-linked glycopeptides using sugars belong to mono, di and polysaccharides, with the efforts mainly directed towards the identification of antibacterial compounds.
28149301	7	29	gly	linked	1061:1066	arg1	lignin AND individual hemicellulosic polysaccharides	lignin			individual hemicellulosic polysaccharides	Fterm		lignin			Feruoylation results in a wall with individual hemicellulosic polysaccharides (arabinoxylans) covalently linked to each other and to lignin.
25712388	3	36	part_of	polymer-ECM	488:498	arg1	a polymer-ECM composite	ECM		a polymer-ECM composite		PUBTATOR	Site	ECM	22915	composite	To address this limitation, we designed a polymer-ECM composite and demonstrated its potential to reduce thrombosis and facilitate re-endothelialization in a vascular graft model.
27423948	2	45	gly	sialylated	343:352	arg1	Sia-GC				Sia-GC						Human milk sialylated glycoconjugates (Sia-GC) are bioactive compounds known to act as prebiotics and promote neurodevelopment, immune function, and gut maturation in newborns.
27268480	12	78	gly	pigs	2206:2209	arg1	Gal-free pericardium	pigs			Gal-free pericardium	OGER		pigs	Q96S52		This study measures the tissue equivalency between standard pig pericardium and Gal-free pericardium from genetically modified pigs as a first step towards making Gal-free BHVs.
24527702	3	28	gly	used	399:402	arg2	The resulting GO-carrageenan (GO-Car) composite			The resulting GO-carrageenan (GO-Car) composite						composite	The resulting GO-carrageenan (GO-Car) composite was further used as a substrate for biomimetic and cell-mediated mineralization of hydroxyapatite (HA).
28351515	10	60	gly	sialylation	1613:1623	arg1	sialylation				sialylation						In summary, we suggest that the concentration of the donor substrate of sialyltransferases, which can be regarded as a sensor for the environmental conditions of a cell, regulates not only total sialylation, but also the quality of sialylation.
25618374	1	47	part_of	SH-β-CD-Gr/AuNPs	285:300	arg1	thio-β-cyclodextrin functionalized graphene/gold nanoparticles (SH-β-CD-Gr/AuNPs) composites	-CD		thio-β-cyclodextrin functionalized graphene/gold nanoparticles (SH-β-CD-Gr/AuNPs) composites		PUBTATOR	Site	-CD	65057	composites	We demonstrate a facile one-pot synthetic strategy for controlled synthesis of thio-β-cyclodextrin functionalized graphene/gold nanoparticles (SH-β-CD-Gr/AuNPs) composites using SH-β-CD as both the dispersant and linker.
27495179	3	43	part_of	AATI	555:558	arg1	Thirty-seven AATI polypeptides	Thirty-seven AATI		Thirty-seven AATI polypeptides		Cterm	Site	Thirty-seven AATI		polypeptides	Thirty-seven AATI polypeptides, about 14 kDa in size, were split into three families named AATI-1, AATI-2, and AATI-3 with different primary structures and isoelectric points.
27495179	3	46	part_of	Thirty-seven	542:553	arg1	Thirty-seven AATI polypeptides	Thirty-seven AATI		Thirty-seven AATI polypeptides		Cterm	Site	Thirty-seven AATI		polypeptides	Thirty-seven AATI polypeptides, about 14 kDa in size, were split into three families named AATI-1, AATI-2, and AATI-3 with different primary structures and isoelectric points.
25117226	1	21	gly	glycoproteins	205:217	arg1	glycan motifs	glycoproteins			glycan motifs	Fterm		glycoproteins			Serial lectin affinity chromatography is a convenient technique for characterizing glycan motifs (terminal glycan structures) of glycoproteins or released glycans.
25117226	1	21	gly	glycoproteins	205:217	arg1	terminal glycan structures	glycoproteins			terminal glycan structures	Fterm		glycoproteins			Serial lectin affinity chromatography is a convenient technique for characterizing glycan motifs (terminal glycan structures) of glycoproteins or released glycans.
28230255	2	41	gly	pectin	177:182	arg1	neutral sugar composition	pectin			neutral sugar composition	Fterm		pectin			In this research, changes in pectin characteristics, including pectin content, neutral sugar composition, molecular weight (Mw ) distribution and degree of methylesterification (DM), in six different growth stages (S1 to S6) of jujube fruit were assessed.
28230255	5	71	gly	monosaccharide	722:735	arg1	pectin	pectin			monosaccharide	Fterm		pectin			Arabinose proved to be the principal branched neutral monosaccharide in pectin during growth and was lost from WSP, CSP and SSP in S4 to S6.
26905395	6	22	part_of	RS-7-4	767:772	arg1	A4α L-Lys-L-Thr-D-Asp	RS-7-4		A4α L-Lys-L-Thr-D-Asp		Cterm	AminoAcid	RS-7-4		Lys	The peptidoglycan type of strain RS-7-4(T) was found to be A4α L-Lys-L-Thr-D-Asp.
24026960	2	21	gly	N-glycopeptides	437:451	arg2	N-glycopeptides			N-glycopeptides						N-glycopeptides	7 glycopeptides, viz., Arg-Asn-Mannose, Arg-Asn-Lactose, His-Asn-Mannose, His-Asn-Lactose (N-glycopeptides), Arg-Ser-Lactose, Arg-Thr-Lactose, Arg-Thr-Starch (O-glycopeptides) were prepared by dicyclohexyl carbodimide (DCC) coupling for amino acids using microwave oven (50W power; 15 min) and activated and coupled with respective sugar moieties using microwave oven at 120 W for 20-25 min.
24026960	2	21	gly	N-glycopeptides	437:451	arg2	His-Asn-Lactose			His-Asn-Lactose						His-Asn-Lactose	7 glycopeptides, viz., Arg-Asn-Mannose, Arg-Asn-Lactose, His-Asn-Mannose, His-Asn-Lactose (N-glycopeptides), Arg-Ser-Lactose, Arg-Thr-Lactose, Arg-Thr-Starch (O-glycopeptides) were prepared by dicyclohexyl carbodimide (DCC) coupling for amino acids using microwave oven (50W power; 15 min) and activated and coupled with respective sugar moieties using microwave oven at 120 W for 20-25 min.
24026960	2	37	gly	O-glycopeptides	505:519	arg2	O-glycopeptides			O-glycopeptides						O-glycopeptides	7 glycopeptides, viz., Arg-Asn-Mannose, Arg-Asn-Lactose, His-Asn-Mannose, His-Asn-Lactose (N-glycopeptides), Arg-Ser-Lactose, Arg-Thr-Lactose, Arg-Thr-Starch (O-glycopeptides) were prepared by dicyclohexyl carbodimide (DCC) coupling for amino acids using microwave oven (50W power; 15 min) and activated and coupled with respective sugar moieties using microwave oven at 120 W for 20-25 min.
24026960	2	39	gly	glycopeptides	348:360	arg2	7 glycopeptides			7 glycopeptides						glycopeptides	7 glycopeptides, viz., Arg-Asn-Mannose, Arg-Asn-Lactose, His-Asn-Mannose, His-Asn-Lactose (N-glycopeptides), Arg-Ser-Lactose, Arg-Thr-Lactose, Arg-Thr-Starch (O-glycopeptides) were prepared by dicyclohexyl carbodimide (DCC) coupling for amino acids using microwave oven (50W power; 15 min) and activated and coupled with respective sugar moieties using microwave oven at 120 W for 20-25 min.
28225082	2	35	part_of	gelatin	478:484	arg1	lysine and glutamine residues	gelatin		lysine and glutamine residues		Fterm	AminoAcid	gelatin		lysine and glutamine residues	In this study, magnetic gelatin was prepared using transglutaminase as a cross-linker, which could only catalyze an acyl-transfer reaction between lysine and glutamine residues of the gelatin and not affect other amino groups.
27496766	0	18	gly	glycoprotein	73:84	arg1	human UDP-glucose:glycoprotein glucosyltransferases				human UDP-glucose:glycoprotein glucosyltransferases						Effects of domain composition on catalytic activity of human UDP-glucose:glycoprotein glucosyltransferases.
25614493	1	16	part_of	gelatin	122:128	arg1	The hydrolyzed gelatin peptides	gelatin		The hydrolyzed gelatin peptides		Fterm	Site	gelatin		peptides	The hydrolyzed gelatin peptides, obtained from the hydrolysis of Tilapia nilotica skin gelatin with alcalase and pronase E, were fractionated using an ultrafiltration system into hydrolyzed gelatin peptides-a (10 kDa membrane), hydrolyzed gelatin peptides-b1, and hydrolyzed gelatin peptides-b2 (5 kDa membrane) fractions.
25614493	1	29	part_of	gelatin	346:352	arg1	hydrolyzed gelatin peptides-b1	gelatin		hydrolyzed gelatin peptides-b1		Fterm	Site	gelatin		peptides-b1	The hydrolyzed gelatin peptides, obtained from the hydrolysis of Tilapia nilotica skin gelatin with alcalase and pronase E, were fractionated using an ultrafiltration system into hydrolyzed gelatin peptides-a (10 kDa membrane), hydrolyzed gelatin peptides-b1, and hydrolyzed gelatin peptides-b2 (5 kDa membrane) fractions.
25614493	1	63	part_of	gelatin	382:388	arg1	hydrolyzed gelatin peptides-b2	gelatin		hydrolyzed gelatin peptides-b2		Fterm	Site	gelatin		peptides-b2	The hydrolyzed gelatin peptides, obtained from the hydrolysis of Tilapia nilotica skin gelatin with alcalase and pronase E, were fractionated using an ultrafiltration system into hydrolyzed gelatin peptides-a (10 kDa membrane), hydrolyzed gelatin peptides-b1, and hydrolyzed gelatin peptides-b2 (5 kDa membrane) fractions.
25614493	1	82	part_of	gelatin	297:303	arg1	hydrolyzed gelatin peptides-a	gelatin		hydrolyzed gelatin peptides-a		Fterm	Site	gelatin		peptides-a	The hydrolyzed gelatin peptides, obtained from the hydrolysis of Tilapia nilotica skin gelatin with alcalase and pronase E, were fractionated using an ultrafiltration system into hydrolyzed gelatin peptides-a (10 kDa membrane), hydrolyzed gelatin peptides-b1, and hydrolyzed gelatin peptides-b2 (5 kDa membrane) fractions.
25582509	1	59	gly	glycopeptides	158:170	arg2	glycopeptides			glycopeptides						glycopeptides	Fragmentation of glycopeptides in tandem mass spectrometry (MS/MS) plays a pivotal role in site-specific protein glycosylation profiling by allowing specific oligosaccharide compositions and connectivities to be associated with specific loci on the corresponding protein.
28644609	6	28	gly	GalNAc-Tyr	914:923	arg1	GalNAc-Tyr modified proteins			Tyr	GalNAc-Tyr modified proteins					Tyr	Thus, detection of GalNAc-Tyr modified proteins is an important consideration when analyzing results from these reagents.
25582509	2	26	gly	glycopeptide	613:624	arg2	glycopeptide ions			glycopeptide ions						glycopeptide	Although MS/MS analysis of glycopeptides has been successfully performed using a number of distinct ion dissociation methods, relatively little is known regarding the fragmentation characteristics of glycopeptide ions with various charge carriers.
25582509	2	28	gly	glycopeptides	440:452	arg2	glycopeptides			glycopeptides						glycopeptides	Although MS/MS analysis of glycopeptides has been successfully performed using a number of distinct ion dissociation methods, relatively little is known regarding the fragmentation characteristics of glycopeptide ions with various charge carriers.
27133054	7	17	part_of	Fe3O4-β-CD-PEG-PEI	1432:1449	arg1	loaded Fe3O4-β-CD-PEG-PEI composite	-CD		loaded Fe3O4-β-CD-PEG-PEI composite		PUBTATOR	Site	-CD	65057	composite	The in-vitro release behavior of 5-FU from drug (5-FU) loaded Fe3O4-β-CD-PEG-PEI composite at different pH values and temperature was studied.
24326036	6	16	part_of	GO/CSA	1051:1056	arg1	GO/CSA composite	CSA		GO/CSA composite		OGER	Site	CSA	Q13216	composite	It was suggested that the reactive groups of GO and CSA can interact with the amino groups of dorzolamide and mainly the abundance of carboxyl groups of GO/CSA composite was the main reason for its enhanced adsorption capacity.
26044012	2	3	part_of	EGF	278:280	arg1	only its N-terminal lectin and EGF domains	EGF		only its N-terminal lectin and EGF domains		OGER	Site	EGF	P01133	domains	We previously expressed a recombinant form of P-selectin containing only its N-terminal lectin and EGF domains in CHO-K1 cells and showed that these two domains are sufficient to mediate ligand binding.
26044012	2	11	part_of	containing	236:245	arg1	P-selectin AND only its N-terminal lectin and EGF domains	P-selectin		only its N-terminal lectin and EGF domains		OGER	Site	form of P-selectin	P16109	domains	We previously expressed a recombinant form of P-selectin containing only its N-terminal lectin and EGF domains in CHO-K1 cells and showed that these two domains are sufficient to mediate ligand binding.
28952479	5	22	gly	glycoprotein	779:790	arg1	recombinant glycoprotein production	recombinant glycoprotein production				Fterm		glycoprotein			Concentrations of up to 500 µM had no substantial effects on viability and recombinant glycoprotein production of human embryonic kidney (HEK)-293T cells.
24026960	0	32	gly	glycopeptides	105:117	arg2	N-linked and O-linked smaller chain glycopeptides			N-linked and O-linked smaller chain glycopeptides						glycopeptides	Antimicrobial glycopeptides: synthesis and antibacterial activity of N-linked and O-linked smaller chain glycopeptides.
24026960	0	45	gly	glycopeptides	14:26	arg2	Antimicrobial glycopeptides			Antimicrobial glycopeptides						glycopeptides	Antimicrobial glycopeptides: synthesis and antibacterial activity of N-linked and O-linked smaller chain glycopeptides.
27826024	7	81	gly	compositional	962:974	arg1	tissue water, glycosaminoglycan, lipid, and pyridinoline contents			position	tissue water, glycosaminoglycan, lipid, and pyridinoline contents					position	Raman microspectroscopic analysis was performed as a function of tissue age based on the presence of multiple fluorescent double labels, to determine whether bone compositional properties (mineral/matrix ratio, tissue water, glycosaminoglycan, lipid, and pyridinoline contents, and mineral maturity/crystallinity) are similar between periosteal, osteonal, and endosteal surfaces, as well as to determine the effects of ovarian hormone depletion on them.
28437729	8	60	part_of	SLN	1282:1284	arg1	composition	SLN		composition		OGER	Site	SLN	O00631	position	The different size and composition and the opposite charges of SLN and CS/TPP nanoparticles could be associated with the differential phytotoxicity of these nanomaterials.
28437729	8	62	part_of	CS/TPP	1290:1295	arg1	composition	TPP		composition		OGER	Site	TPP	Q68CZ2	position	The different size and composition and the opposite charges of SLN and CS/TPP nanoparticles could be associated with the differential phytotoxicity of these nanomaterials.
28149301	1	8	part_of	protein	152:158	arg1	complex composites	protein		complex composites		Fterm	Site	protein		composites	Cell wall matrices are complex composites mainly of polysaccharides, phenolics (monomers and polymers), and protein.
26298759	15	10	part_of	protein	2319:2325	arg1	the permeate protein composition	protein		the permeate protein composition		Fterm	Site	protein		position	Feeding a MF system with MPC instead of skim milk will reduce the required membrane surface area, but the permeate protein composition will be slightly higher in casein content.
25582509	4	29	gly	glycopeptide	943:954	arg2	The doubly protonated glycopeptide ions			The doubly protonated glycopeptide ions						glycopeptide	The doubly protonated glycopeptide ions with various compositions were found to undergo fragmentation over a relatively low but wide range of collision energies compared with the doubly sodiated and hybrid charged ions, and were found to yield both glycan and peptide fragmentation depending on the applied collision energy.
25612313	11	26	part_of	CNC	1981:1983	arg1	CNC bionanocomposites	CNC		CNC bionanocomposites		OGER	Site	CNC	P32418	bionanocomposites	The high porosity of chitosan, PNIPAAM, and silk gels led to excellent transport, which was significantly better than CNC bionanocomposites.
27423948	1	78	gly	sialylated	271:280	arg1	human sialylated milk oligosaccharide				human sialylated milk oligosaccharide						Sialic acids (Sia) are key monosaccharide constituents of sialylated glycoproteins (Sia-GP), human sialylated milk oligosaccharide (Sia-MOS), and gangliosides.
27423948	1	78	gly	sialylated	271:280	arg1	Sia-MOS				Sia-MOS						Sialic acids (Sia) are key monosaccharide constituents of sialylated glycoproteins (Sia-GP), human sialylated milk oligosaccharide (Sia-MOS), and gangliosides.
27423948	1	28	gly	sialylated	230:239	arg1	Sia-GP	glycoproteins			Sia-GP	Fterm		glycoproteins			Sialic acids (Sia) are key monosaccharide constituents of sialylated glycoproteins (Sia-GP), human sialylated milk oligosaccharide (Sia-MOS), and gangliosides.
27423948	1	92	gly	glycoproteins	241:253	arg1	sialylated glycoproteins	glycoproteins			Sialic acids	Fterm		glycoproteins			Sialic acids (Sia) are key monosaccharide constituents of sialylated glycoproteins (Sia-GP), human sialylated milk oligosaccharide (Sia-MOS), and gangliosides.
27423948	1	92	gly	glycoproteins	241:253	arg1	sialylated glycoproteins	glycoproteins			key monosaccharide constituents	Fterm		glycoproteins			Sialic acids (Sia) are key monosaccharide constituents of sialylated glycoproteins (Sia-GP), human sialylated milk oligosaccharide (Sia-MOS), and gangliosides.
27423948	1	92	gly	glycoproteins	241:253	arg1	Sia-GP	glycoproteins			Sia-GP	Fterm		glycoproteins			Sialic acids (Sia) are key monosaccharide constituents of sialylated glycoproteins (Sia-GP), human sialylated milk oligosaccharide (Sia-MOS), and gangliosides.
28644609	3	59	gly	GalNAc-Tyr	426:435	arg1	GalNAc-Tyr glycopeptides			Tyr	GalNAc-Tyr glycopeptides					Tyr	To gain insight into this new type of modification, we synthesized a group of GalNAc-Tyr glycopeptides, constructed microarrays, and evaluated potential recognition of GalNAc-Tyr by a series of glycan-binding proteins.
26573895	1	65	gly	used	215:218	arg2	A β-cyclodextrin-modified attapulgite composite			A β-cyclodextrin-modified attapulgite composite						composite	A β-cyclodextrin-modified attapulgite composite was prepared and used as a dispersive micro-solid-phase extraction sorbent for the determination of benzoylurea insecticides in honey samples.
27496766	1	42	gly	glycoprotein	142:153	arg1	glycoprotein glucosyltransferase				glycoprotein glucosyltransferase						Uridine diphosphate (UDP)-glucose:glycoprotein glucosyltransferase (UGGT) 1 is a soluble protein residing in the endoplasmic reticulum (ER) and partially in ER-Golgi intermediate compartment.
26949214	1	4	part_of	@	308:308	arg1	A β-cyclodextrin (β-CD) functionalized magnetic reduced graphene oxide composite	Fe3O4/RGO@β-CD		A β-cyclodextrin (β-CD) functionalized magnetic reduced graphene oxide composite		PUBTATOR	Site	Fe3O4/RGO@β-CD	65057	composite	A β-cyclodextrin (β-CD) functionalized magnetic reduced graphene oxide composite (Fe3O4/RGO@β-CD) has been prepared and its application as a selective adsorbent for the determination of the two naphthalene-derived phytohormones (1-naphthalene acetic acid (NAA) and 2-naphthoxyacetic acid (2-NOA)) has been investigated.
26949214	1	48	part_of	Fe3O4/RGO	299:307	arg1	A β-cyclodextrin (β-CD) functionalized magnetic reduced graphene oxide composite	Fe3O4/RGO@β-CD		A β-cyclodextrin (β-CD) functionalized magnetic reduced graphene oxide composite		PUBTATOR	Site	Fe3O4/RGO@β-CD	65057	composite	A β-cyclodextrin (β-CD) functionalized magnetic reduced graphene oxide composite (Fe3O4/RGO@β-CD) has been prepared and its application as a selective adsorbent for the determination of the two naphthalene-derived phytohormones (1-naphthalene acetic acid (NAA) and 2-naphthoxyacetic acid (2-NOA)) has been investigated.
24235141	5	78	part_of	LOS	782:784	arg1	LOS composition	LOS		LOS composition		Cterm	Site	LOS		position	Herein, we addressed whether LOS composition affects the uptake of M. marinum by professional phagocytes.
27615441	12	62	gly	had	2514:2516	arg1	the composite AND sulfated glycosaminoglycan content			the composite	sulfated glycosaminoglycan content					composite	Biochemically, the composite had similar mature elastin content, sulfated glycosaminoglycan content, and collagen subtype III/I ratio but lower total collagen content when compared to sham (P = .011).
28757018	1	1	gly	domain	227:232	arg1	the terminal sialic acids			domain	the terminal sialic acids					domain	Group A rotaviruses (RVAs) are divided into neuraminidase (NA)-sensitive and NA-insensitive strains depending upon their binding affinity to the VP8* domain in the terminal sialic acids (SAs) of cell surface carbohydrates.
28644609	10	1	gly	GalNAc-Tyr	1407:1416	arg1	a GalNAc-Tyr epitope			Tyr	a GalNAc-Tyr epitope					Tyr	hMGL also bound the natural beta-amyloid peptide containing a GalNAc-Tyr epitope.
28644609	10	74	gly	containing	1394:1403	arg1	the natural beta-amyloid peptide AND a GalNAc-Tyr epitope			the natural beta-amyloid peptide	a GalNAc-Tyr epitope					peptide	hMGL also bound the natural beta-amyloid peptide containing a GalNAc-Tyr epitope.
25766457	5	0	part_of	variants	1377:1384	arg1	dietary composition	variants		dietary composition		Fterm	Site	variants		position	Genetic variation in populations and gene-nutrient interactions are fundamental concepts that need to be taken into consideration in growth and development and in the prevention and management of chronic noncommunicable diseases since there is enormous variation in both the frequency of genetic variants and dietary composition worldwide.
28351515	3	73	gly	glycoproteins	496:508	arg1	the terminal monosaccharide	glycoproteins			the terminal monosaccharide	Fterm		glycoproteins			Sialic acid (Sia) is the terminal monosaccharide of most glycoproteins or glycolipids (= glycoconjugates) and involved in a variety of function on molecular (e.g. determination of protein stability and half-life) and cellular level (e.g. influenza infection).
25731097	6	77	part_of	starch-GNS	1177:1186	arg1	the HCPT@starch-GNS composite	GNS		the HCPT@starch-GNS composite		OGER	Site	GNS	P15586	composite	With the double action of an acid microenvironment and the diastase in SW-620 cells, the HCPT@starch-GNS composite showed high toxicity to the SW-620 cells and experienced a pH sensitive as well as a starch-mediated in vitro sustained release process, which had the potential advantage of improving therapeutic efficacy.
26168161	6	32	gly	glycoproteins	571:583	arg1	These glycoproteins	These glycoproteins				Fterm		glycoproteins			These glycoproteins are mainly produced in the main nidamental glands.
24274539	1	3	part_of	arabinogalactan-proteins	155:178	arg1	seven hairy regions	arabinogalactan-proteins		seven hairy regions		Fterm	Site	arabinogalactan-proteins		regions	Interactions between seven hairy regions of pectins, rhamnogalacturonans II and arabinogalactan-proteins and procyanidins with different average degrees of polymerization, low (DP9) and high (DP30), were investigated by isothermal titration calorimetry and absorption analysis to study the impact of neutral sugar side chains of pectins on these associations.
24484315	0	83	gly	composition	78:88	arg1	a key determinant			position	a key determinant					position	Geographical ancestry is a key determinant of epidermal morphology and dermal composition.
25425657	10	40	part_of	SSA	1465:1467	arg1	SSA binding sites	SSA		SSA binding sites		OGER	Site	SSA	P10155	sites	This result suggests that proximity of the antigen epitope to SSA binding sites is critical for SSA inhibition in immunohistochemistry.
25860971	8	73	gly	used	1138:1141	arg2	The dried residue			The dried residue						residue	The dried residue from the extraction of cassava starch can be used as feed for dairy cows to replace up to 100% of the corn ration.
28106279	2	23	gly	used	310:313	arg2	A β-cyclodextrin-reduced graphene oxide composite			A β-cyclodextrin-reduced graphene oxide composite						composite	A β-cyclodextrin-reduced graphene oxide composite was used as a reinforcing material in electrochemical determination of thiamethoxam.
26168161	10	33	gly	proteins	1050:1057	arg1	polysaccharides	proteins			polysaccharides	Fterm		proteins			This network is similar to the capsule network, and it associates these structural proteins with polysaccharides, melanin and bacteria to form a tight mesh.
24594175	1	24	part_of	Small	111:115	arg1	Small peptides	Small		Small peptides		OGER	Site	Small		peptides	Small peptides show higher antioxidant capacity than native proteins and may be absorbed in the intestine without further digestion.
24026960	4	42	gly	glycopeptide	1015:1026	arg2	the test glycopeptide			the test glycopeptide						glycopeptide, His-Asn-Lactose	One of the test glycopeptide, His-Asn-Lactose was found to be very effective against all the microbial strains tested and 3 other Test Compounds, viz., His-Asn-Mannose, Arg-Thr-Lactose and Arg-Thr-Starch are also proved to be effective against 2 gram positive and 2 gram negative strains tested.
29283294	5	32	part_of	warfarin	658:665	arg1	a composite	warfarin		a composite		Fterm	Site	warfarin		composite	The primary outcome was a composite of (1) documentation of anticoagulation plan, (2) holding warfarin at least 5 days prior to procedure, (3) guideline-congruent low molecular weight heparin (LMWH) bridging, and (4) correct LMWH dosing if bridging deemed necessary.
28757018	7	85	gly	glycoprotein	1609:1620	arg1	N-linked glycoprotein	N-linked glycoprotein				Fterm		glycoprotein			Our study demonstrates that four NA-sensitive animal strains could have a strain-dependent binding preference toward α2,6-linked SAs (P[1] NCDV and P[3] CU-1 strains) or both α2,3- and α2,6-linked SAs (P[7] PRG9121 and P[23] PRG942 strains) to the glycolipid and N-linked glycoprotein.
24368301	9	3	gly	attached	1252:1259	arg1	the model antigen ovalbumin AND These CLR-binding carbohydrates	the model antigen ovalbumin			These CLR-binding carbohydrates	Fterm		ovalbumin			These CLR-binding carbohydrates were then covalently attached to the model antigen ovalbumin.
28659516	4	3	part_of	PTh/RHA/HPC	979:989	arg1	PTh/RHA/HPC nanocomposite	HPC		PTh/RHA/HPC nanocomposite		OGER	Site	HPC	P11498	nanocomposite	The highest efficiency of adsorption (98.12%) was achieved with 0.05 g of PTh/RHA/HPC nanocomposite adsorbent in 50 mL of 10 mg/L Pb(II) solution.
27179695	8	88	part_of	ECM	1608:1610	arg1	ECM composition	ECM		ECM composition		OGER	Site	ECM	Q13201	position	These data clearly show that ERβ plays a crucial role in the cell behavior and ECM composition of the highly aggressive MDA-MB-231 cells and opens a new area of research to further understand its role and to improve pharmaceutical targeting of the non-hormone dependent breast cancer.
29202734	0	101	part_of	α-amylase	25:33	arg1	A tandem CBM25 domain	-amylase		A tandem CBM25 domain		PUBTATOR	Site	-amylase	102577485	domain	A tandem CBM25 domain of α-amylase from Microbacterium aurum as potential tool for targeting proteins to starch granules during starch biosynthesis.
28447343	0	86	part_of	Impact	0:5	arg1	hepatic lipid composition	Impact		hepatic lipid composition		OGER	Site	Impact	Q5GFD9	position	Impact of perinatal exposure to sucrose or high fructose corn syrup (HFCS-55) on adiposity and hepatic lipid composition in rat offspring.
24527702	3	18	part_of	GO-Car	369:374	arg1	The resulting GO-carrageenan (GO-Car) composite	Car		The resulting GO-carrageenan (GO-Car) composite		OGER	Site	Car	Q14994	composite	The resulting GO-carrageenan (GO-Car) composite was further used as a substrate for biomimetic and cell-mediated mineralization of hydroxyapatite (HA).
25745027	0	32	part_of	HDL	24:26	arg1	HDL Composition	HDL		HDL Composition		OGER	Site	HDL	Q9UNE0	position	Dialysis Modalities and HDL Composition and Function.
24368301	5	44	part_of	Fc	846:847	arg1	the Fc fragment	Fc		the Fc fragment		Cterm	Site	Fc		fragment	A comprehensive library of CLRs was expressed by fusing the extracellular part of each respective CLR, the part containing the carbohydrate-recognition domain (CRD), to the Fc fragment of human IgG1 molecules.
27318177	2	1	gly	glycoproteins	293:305	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			During T. cruzi developmental stages, glycoproteins play important role in the host-parasite interaction, such as cellular recognition, host cell invasion and adhesion, and immune evasion.
25032222	6	49	gly	glycoproteins	879:891	arg1	the O-GlcNAc levels	glycoproteins			the O-GlcNAc levels	Fterm		glycoproteins			Silibinin can increase the O-GlcNAc levels of glycoproteins in ARPE-19 cells.
26726562	0	18	part_of	Multi-Decorated	30:44	arg1	β-Cyclodextrin Multi-Decorated Halloysite	Multi		β-Cyclodextrin Multi-Decorated Halloysite		OGER	Site	Multi		Halloysite	Preparation of β-Cyclodextrin Multi-Decorated Halloysite Nanotubes as a Catalyst and Nanoadsorbent for Dye Removal.
28952479	8	75	gly	fucosylation	1235:1246	arg1	the recombinant glycoprotein	the recombinant glycoprotein				Fterm		glycoprotein			Sequential fucosylation of the recombinant glycoprotein, achieved by the application of increasing concentrations of PEGylated fucose up to 70 µM, correlated with a reduced antibody's binding activity in a Fcγ receptor IIIa (FcγRIIIa) binding assay.
28952479	8	81	gly	glycoprotein	1267:1278	arg1	the recombinant glycoprotein	glycoprotein			Sequential fucosylation	Fterm		glycoprotein			Sequential fucosylation of the recombinant glycoprotein, achieved by the application of increasing concentrations of PEGylated fucose up to 70 µM, correlated with a reduced antibody's binding activity in a Fcγ receptor IIIa (FcγRIIIa) binding assay.
26995354	6	33	gly	glycopeptides	868:880	arg2	Intact glycopeptides			Intact glycopeptides						glycopeptides	Intact glycopeptides are recovered by cleavage of the probe, analyzed with directed MS, and assigned by targeted mass-independent data analysis.
24035888	7	41	part_of	HyA/OCP	1315:1321	arg1	HyA/OCP composites	HyA		HyA/OCP composites		OGER	Site	HyA	Q62240	composites	The results suggest that the osteoconductive property of OCP was accelerated by the HyAs-associated osteoclastic resorption of OCP, and therefore that HyA/OCP composites are attractive bone substitutes which are injectable and bioactive materials.
24603701	1	74	gly	leucine-rich	190:201	arg1	a small leucine-rich proteoglycan			leucine	a small leucine-rich proteoglycan					leucine	Fibromodulin (FMOD) is a small leucine-rich proteoglycan required for scarless fetal cutaneous wound repair.
29202734	1	52	gly	used	236:239	arg2	BACKGROUND Starch-binding domains			BACKGROUND Starch-binding domains						domains	BACKGROUND Starch-binding domains from carbohydrate binding module family 20 have been used as a tool for starch engineering.
29202734	1	82	gly	family	216:221	arg1	BACKGROUND Starch-binding domains			BACKGROUND Starch-binding domains	BACKGROUND Starch-binding domains		Site			domains	BACKGROUND Starch-binding domains from carbohydrate binding module family 20 have been used as a tool for starch engineering.
26751495	2	1	gly	O-glycoproteins	462:476	arg1	N-and O-glycoproteins	N-and O-glycoproteins				Fterm		O-glycoproteins			We analyzed both transferases in vivo and in vitro and could show significant differences in their activity towards N-and O-glycoproteins in vivo.
27725175	4	32	part_of	β-CNP	502:506	arg1	composition	CNP		composition		OGER	Site	CNP	P09543	position	The morphological characterization, composition and surface topography of β-CNP were explored by SEM, EDAX and AFM techniques.
25731097	4	29	part_of	starch-GNS	822:831	arg1	the HCPT@starch-GNS composite	GNS		the HCPT@starch-GNS composite		OGER	Site	GNS	P15586	composite	After the loading of the commonly used anticancer drug hydroxycamptothecin (HCPT) via physisorption on starch-GNS, the HCPT@starch-GNS composite exhibited a high drug loading capacity and was therefore used for cellular imaging and drug delivery studies.
29567261	1	55	part_of	chitosan-PEG	278:289	arg1	chitosan-PEG nanocomposites	PEG		chitosan-PEG nanocomposites		OGER	Site	PEG	P09466	nanocomposites	The purpose of this study was to fabricate a triple-component nanocomposite system consisting of chitosan, polyethylene glycol (PEG), and drug for assessing the application of chitosan-PEG nanocomposites in drug delivery and also to assess the effect of different molecular weights of PEG on nanocomposite characteristics.
26407050	2	50	part_of	AP-X	398:401	arg1	Clearfil AP-X composite	Clearfil AP-X		Clearfil AP-X composite		PUBTATOR	Site	Clearfil AP-X	328	composite	For 21 days, 14 volunteers wore a modified occlusal splint containing human dentin samples with an average gap of 215 µm (SD=55 µm) restored with three different materials: Filtek Supreme composite, Clearfil AP-X composite and Tytin amalgam.
26407050	2	56	part_of	Clearfil	389:396	arg1	Clearfil AP-X composite	Clearfil AP-X		Clearfil AP-X composite		PUBTATOR	Site	Clearfil AP-X	328	composite	For 21 days, 14 volunteers wore a modified occlusal splint containing human dentin samples with an average gap of 215 µm (SD=55 µm) restored with three different materials: Filtek Supreme composite, Clearfil AP-X composite and Tytin amalgam.
25297114	6	75	part_of	AP-X	1190:1193	arg1	AP-X composite	AP-X		AP-X composite		PUBTATOR	Site	AP-X	328	composite	A statistically significant effect of AP-X composite with Protect Bond was found for LD and ML at the WallDentin1 location, leading to less advanced wall lesions.
26044012	1	5	gly	glycoprotein	100:111	arg1	P-selectin	P-selectin				OGER		P-selectin	P16109		P-selectin is a multi-domain glycoprotein expressed on activated endothelial cells and activated platelets.
26044012	1	5	gly	glycoprotein	100:111	arg1	a multi-domain glycoprotein	a multi-domain glycoprotein				Fterm		glycoprotein			P-selectin is a multi-domain glycoprotein expressed on activated endothelial cells and activated platelets.
28870747	9	26	part_of	CS/PVA-based	910:921	arg1	The CS/PVA-based hydrogel composite	PVA		The CS/PVA-based hydrogel composite		OGER	Site	PVA	P32926	composite	The CS/PVA-based hydrogel composite exhibited good properties as a drug delivery system.
25056822	2	6	part_of	composition	341:351	arg1	rat dams	dams		composition		OGER	Site	dams	Q9Y6J3	position	The effect of maternal high-protein (HP) or prebiotic diets on maternal milk composition and gut microbiota in rat dams and offspring was examined.
24981201	5	65	gly	mannoproteins	1023:1035	arg1	more carbohydrate epitopes	mannoproteins			more carbohydrate epitopes	Fterm		mannoproteins			More cell wall damage occurred in Δktr4 and Δkre2 than in Δktr1, including altered contents of the cell wall components mannoproteins, α-glucans and chitin, more carbohydrate epitopes changed on conidial surfaces, much lower conidial hydrophobicity, and thinner cell walls.
26949374	1	72	gly	glycoprotein	160:171	arg1	urinary glycoprotein lipocalin 2	urinary glycoprotein lipocalin 2				Fterm		glycoprotein			BACKGROUND The amount of urinary glycoprotein lipocalin 2 (LCN2) has been known to increase after kidney injury because of failed reabsorption by the proximal tubules or direct secretion from injured tissues.
28249373	7	53	gly	presence	1131:1138	arg2	composites AND polysaccharides			composites	polysaccharides					composites	FTIR spectroscopy data confirm the presence of functional groups typical for nHAp as well as polysaccharides in composites.
28166949	0	7	part_of	Impact	0:5	arg1	composition	Impact		composition		OGER	Site	Impact	Q9P2X3	position	Impact of three THI levels on somatic cell count, milk yield and composition of multiparous Holstein cows in a subtropical region.
27220431	7	44	part_of	Nterminal	1280:1288	arg1	the Nterminal fragments	Nterminal		the Nterminal fragments		Cterm	Site	Nterminal		fragments	At the same time, L-VEGF144 lacked most of the Nterminal fragments (exons 1-5).
25425657	7	39	gly	N-glycosylation	1146:1160	arg2	N-glycosylation sites			N-glycosylation sites						sites	One antibody (Tf-596Ab) is against a peptide sequence, Cys596-Ala614, which is proximal to N-glycosylation sites (Asn-432 and Asn-630).
25425657	7	42	gly	sites	1162:1166	arg1	N-glycosylation sites			N-glycosylation sites						sites	One antibody (Tf-596Ab) is against a peptide sequence, Cys596-Ala614, which is proximal to N-glycosylation sites (Asn-432 and Asn-630).
25425657	7	39	gly	N-glycosylation	1146:1160	arg2	Asn-630			Asn-432 and Asn-630						Asn-432 and Asn-630	One antibody (Tf-596Ab) is against a peptide sequence, Cys596-Ala614, which is proximal to N-glycosylation sites (Asn-432 and Asn-630).
25425657	7	42	gly	sites	1162:1166	arg1	Asn-432			Asn-432 and Asn-630						Asn-432 and Asn-630	One antibody (Tf-596Ab) is against a peptide sequence, Cys596-Ala614, which is proximal to N-glycosylation sites (Asn-432 and Asn-630).
28460332	2	81	part_of	NPs	370:372	arg1	Ru@SiO2 NPs with chitosan (CS) composites	NPs		Ru@SiO2 NPs with chitosan (CS) composites		OGER	Site	NPs	P0C0P6	composites	Gold-nanoparticles (AuNPs), Ru@SiO2 NPs with chitosan (CS) composites and a molecularly imprinted polymer (MIP) are assembled on a glassy carbon electrode (GCE) to fabricate an ECL platform step by step.
29202734	3	22	gly	family	618:623	arg1	only starch-binding domains			only starch-binding domains	only starch-binding domains		Site			domains	However, although 13 carbohydrate binding module families have been reported to contain starch-binding domains, only starch-binding domains from carbohydrate binding module family 20 have been well studied and introduced into plants successfully.
28747404	4	19	part_of	Gp135	658:662	arg1	the lateral domain	Gp135		the lateral domain		PUBTATOR	Site	Gp135	482252	domain	Gal-8 knockdown induces aberrant lumens at the lateral domain and mistargeting of Gp135 to this structure, thus disrupting the kidney epithelial polarity of MDCK cells, which organize lumens at the apical surface.
27220431	8	41	part_of	mRNA	1421:1424	arg1	L-VEGF144 mRNA fragments	L-VEGF144 mRNA		L-VEGF144 mRNA fragments		Cterm	Site	L-VEGF144 mRNA	7422	fragments	We further found that a specific detection model could easily and rapidly confirm the presence of L-VEGF144 mRNA fragments in the biopsies or cell lines via RT-PCR assay.
27220431	8	88	part_of	L-VEGF144	1411:1419	arg1	L-VEGF144 mRNA fragments	L-VEGF144 mRNA		L-VEGF144 mRNA fragments		Cterm	Site	L-VEGF144 mRNA	7422	fragments	We further found that a specific detection model could easily and rapidly confirm the presence of L-VEGF144 mRNA fragments in the biopsies or cell lines via RT-PCR assay.
24035888	3	16	part_of	OCP-HyA	624:630	arg1	OCP-HyA composites	OCP-HyA		OCP-HyA composites		OGER	Site	OCP-HyA	Q62240	composites	OCP-HyA composites were injected using a syringe into a polytetrafluoroethylene ring, placed on the subperiosteal region of mouse calvaria for 3 and 6 weeks, and then bone formation was assessed by histomorphometry.
26793973	3	21	gly	glycoprotein	498:509	arg1	recombinant human TSG-6	recombinant human TSG-6				PUBTATOR		TSG-6	7130		We prepared stable clones of CHO cells that expressed recombinant human TSG-6 (rhTSG-6) as a secreted glycoprotein.
26793973	3	21	gly	glycoprotein	498:509	arg1	a secreted glycoprotein	a secreted glycoprotein				Fterm		glycoprotein			We prepared stable clones of CHO cells that expressed recombinant human TSG-6 (rhTSG-6) as a secreted glycoprotein.
29202734	9	17	gly	used	1757:1760	arg2	the starch-binding domains			the starch-binding domains						domains	CONCLUSION These results suggest that the starch-binding domains from carbohydrate binding module family 25 can be used as a novel tool for targeting proteins to starch granules during starch biosynthesis without side-effects on starch morphology, composition and properties.
29202734	9	45	gly	family	1740:1745	arg1	the starch-binding domains			the starch-binding domains	the starch-binding domains		Site			domains	CONCLUSION These results suggest that the starch-binding domains from carbohydrate binding module family 25 can be used as a novel tool for targeting proteins to starch granules during starch biosynthesis without side-effects on starch morphology, composition and properties.
28149301	1	8	gly	protein	152:158	arg1	polysaccharides	protein			polysaccharides	Fterm		protein			Cell wall matrices are complex composites mainly of polysaccharides, phenolics (monomers and polymers), and protein.
26837497	9	117	gly	glycosylated	1404:1415	arg1	glycosylated serum protein	glycosylated serum protein				Fterm		protein			Fasting blood glucose and glycosylated serum protein of group C (rats with diabetes that received drinking water with ISPS) were significantly lower than those of group B (rats with diabetes) (P<0.01) after treatment was administered for 2 and 4 weeks.
24368301	6	38	gly	glycosylated	954:965	arg1	CLR-Fc fusion proteins	CLR-Fc fusion proteins				Fterm		proteins			CLR-Fc fusion proteins display the CRD in a dimeric form, are properly glycosylated, and can be detected by a secondary antibody with a conjugated fluorophore.
25425657	0	20	gly	α2,6-sialylated	69:83	arg1	α2,6-sialylated transferrin	α2,6-sialylated transferrin				OGER		α2,6-sialylated transferrin	P02787		In situ visualization of a glycoform of transferrin: localization of α2,6-sialylated transferrin in the liver.
25425657	0	54	gly	glycoform	27:35	arg1	transferrin	transferrin				OGER		transferrin	P02787		In situ visualization of a glycoform of transferrin: localization of α2,6-sialylated transferrin in the liver.
24790018	3	44	part_of	regions	714:720	arg1	biochemical composition	regions		biochemical composition						position	We compared disc/vertebrae morphology and mechanics and biochemical composition of intervertebral discs from lumbar and coccygeal regions between young (4-5 mo) and old (20-22 mo) female C57BL/6 mice.
24959743	4	63	gly	containing	754:763	arg1	the composition AND 10 mM glucose			the composition	10 mM glucose					position	Studies were conducted by manipulating the composition of the artificial cerebrospinal fluid (aCSF), containing either 10 mM glucose, or 20 mM lactate, or no external carbohydrate supply (aglycemia).
26079194	3	13	gly	ECM	358:360	arg1	heparan sulfate proteoglycans	ECM			heparan sulfate proteoglycans	OGER		ECM	Q13201		Fractones are composed of ubiquitous ECM components including heparan sulfate proteoglycans such as perlecan and agrin.
28693200	6	13	gly	glycoprotein	1189:1200	arg1	glycoprotein binding capacity	glycoprotein binding capacity				Fterm		glycoprotein			This difference in glycoprotein binding capacity indicates that cells treated with sorafenib could increase α-1,3GalNAc/Gal, β-1,3 Gal, GalNAcα-Ser/Thr(Tn) and α-GalNAc structures and decrease GlcNAc, sialic acid, tetra-antennary complex-type N-glycan and β-1,4Gal structures.
25074778	5	79	part_of	CCP6-8	906:911	arg1	exogenously applied recombinant CCP6-8 region	CCP6		exogenously applied recombinant CCP6-8 region		PUBTATOR	Site	CCP6	84871	region	The HS and heparanase-1 were detected by immunohistochemistry in macular tissue sections from young and old donors, and binding of exogenously applied recombinant CCP6-8 region of CFH (402Y and 402H variants) was compared.
26407050	7	19	part_of	AP-X	924:927	arg1	AP-X composite	AP-X		AP-X composite		PUBTATOR	Site	AP-X	328	composite	AP-X composite presented the highest mean values of LD and ML of the three restorative materials.
28407595	2	24	gly	his	370:372	arg1	histidine(his)-tag			his	histidine(his)-tag					his	PLBs are based on nickel nitrile tri-acetic acid (Ni-NTA)-functionalized agarose beads, onto which membrane proteins (MP) are bound via histidine(his)-tag.
28407595	2	30	gly	histidine	360:368	arg1	histidine(his)-tag			histidine	histidine(his)-tag					histidine	PLBs are based on nickel nitrile tri-acetic acid (Ni-NTA)-functionalized agarose beads, onto which membrane proteins (MP) are bound via histidine(his)-tag.
24248522	9	22	gly	zinc-α-2-glycoprotein	1298:1318	arg1	zinc-α-2-glycoprotein	zinc-α-2-glycoprotein				Fterm		zinc-α-2-glycoprotein			Higher abundance of bands containing secretory component, zinc-α-2-glycoprotein and carbonic anhydrase 6 was associated to a lower bitterness acceptance, while higher abundance of bands containing lactoperoxidase, prolactin-inducible protein and S-type cystatins was associated to a higher bitterness acceptance.
24927271	5	39	part_of	Fc	878:879	arg1	Fc fragments	Fc		Fc fragments		Cterm	Site	Fc		fragments	A recently discovered endopeptidase, IdeS, cleaves heavy chains below the hinge region, producing F(ab') 2 and Fc fragments.
24326036	1	38	gly	used	237:240	arg2	A novel graphite oxide/poly(acrylic acid) grafted chitosan nanocomposite			A novel graphite oxide/poly(acrylic acid) grafted chitosan nanocomposite						nanocomposite	A novel graphite oxide/poly(acrylic acid) grafted chitosan nanocomposite (GO/CSA) was prepared and used as biosorbent for the removal of pharmaceutical compound (dorzolamide) from biomedical synthetic wastewaters.
28249783	14	13	gly	pro-inflammatory	2209:2224	arg1	lipopolysaccharide			pro	lipopolysaccharide					pro	HF/HSD and LF/HSD-fed rats also exhibited an increase in cecum and serum levels of lipopolysaccharide (LPS), a pro-inflammatory bacterial product.
25117250	1	8	gly	glycosylated	171:182	arg1	a tag				a tag						Utilizing glycosylated derivatives as a tag, we are able to explore novel counter-receptor of endogenous lectins or lectin-like molecules in vivo.
27260440	0	14	part_of	cyclodextrin-silica	81:99	arg1	cyclodextrin-silica microporous composite	cyclodextrin		cyclodextrin-silica microporous composite		Fterm	Site	cyclodextrin		composite	Comparison of the solid-phase extraction efficiency of a bounded and an included cyclodextrin-silica microporous composite for polycyclic aromatic hydrocarbons determination in water samples.
24026960	6	88	gly	N-glycopeptide	1628:1641	arg2	our N-glycopeptide			N-glycopeptide, His-Asn-Lactose						N-glycopeptide, His-Asn-Lactose	This is the first evidence based report that our N-glycopeptide, His-Asn-Lactose tested, has shown antibacterial action against both gram positive and gram negative strains.