doc_id	sent_index	relation_id	relation	trigger	trigger_offset	arg_num	arg_base_np	arg_protein	arg_domain	arg_site	arg_sugar	PSource	SiteSource	NProtein	NID	SiteName	sent_text
26746104	2	57	gly	Glycosylation	273:285	arg1	membrane proteins	membrane proteins				Fterm		proteins			Glycosylation of membrane proteins plays a crucial role in many processes including the intercellular recognition and intermolecular interactions on the cell surface.
28008083	2	54	gly	used	395:398	arg2	the isotopic composition			the isotopic composition						position	This isotopic signature can become integrated into organic molecules, allowing the isotopic composition of biomarkers such as cellulose to be used as sensitive paleo and climatic proxies.
26908829	4	28	part_of	HDL	616:618	arg1	HDL subspecies composition	HDL		HDL subspecies composition		OGER	Site	HDL	Q9UNE0	position,	We studied the effects of four common apoB precipitation methods [polyethylene glycol (PEG), dextran sulfate/magnesium chloride (MgCl2), heparin sodium/manganese chloride (MnCl2), and LipoSep immunoprecipitation (IP)] on HDL subspecies composition, apolipoproteins, and function (cholesterol efflux and reduction of LDL oxidation).
27695962	0	18	gly	O-glycopeptides	72:86	arg2	O-glycopeptides			O-glycopeptides						O-glycopeptides	Isotope-targeted glycoproteomics (IsoTaG) analysis of sialylated N- and O-glycopeptides on an Orbitrap Fusion Tribrid using azido and alkynyl sugars.
24520193	2	98	gly	-1-propylamine	353:366	arg1	residues			residues						residues	METHODS A series of hyperbranched cationic glycogen derivatives conjugated with 3-(dimethylamino)-1-propylamine (DMAPA-Glyp) and 1-(2-aminoethyl) piperazine (AEPZ-Glyp) residues were synthesized and characterized by Fourier-transform infrared and hydrogen-1 nuclear magnetic resonance spectroscopy.
28793792	5	28	part_of	ECM	872:874	arg1	the composition	ECM		the composition		OGER	Site	ECM	Q13201	position	These signaling pathways, in turn, regulate the composition of ECM and its function.
27217558	4	57	gly	glycoproteins	678:690	arg1	hydroxyproline-rich glycoproteins	hydroxyproline-rich glycoproteins				Fterm		glycoproteins			Here we show that these nanoparticles are predominantly composed of arabinogalactan proteins (AGPs), a superfamily of hydroxyproline-rich glycoproteins present in the extracellular spaces of plant cells.
26957414	2	72	gly	glycoproteins	270:282	arg1	aberrant glycoproteins	aberrant glycoproteins				Fterm		glycoproteins			In recent years, the correlation between aberrant glycoproteins and many diseases has been reported.
24957293	1	65	part_of	SLN	195:197	arg1	proper SLN positioning	SLN		proper SLN positioning		OGER	Site	SLN	O00631	position	Biopsy of sentinel lymph node (SLN) has become a common practice to predict whether tumor metastasis has occurred, so proper SLN positioning tracers are highly required.
25633939	6	36	part_of	CCS/BT	812:817	arg1	CCS/BT composite	CCS		CCS/BT composite		OGER	Site	CCS	O14618	composite	The adsorption of MO onto CCS/BT composite followed the Langmuir isotherm model, and the maximum adsorption capacity of CCS/BT composite calculated by the Langmuir model was 224.8 mg/g.
25633939	6	38	part_of	CCS/BT	718:723	arg1	CCS/BT composite	CCS		CCS/BT composite		OGER	Site	CCS	O14618	composite	The adsorption of MO onto CCS/BT composite followed the Langmuir isotherm model, and the maximum adsorption capacity of CCS/BT composite calculated by the Langmuir model was 224.8 mg/g.
29050468	7	17	part_of	ASD	1556:1558	arg1	appropriate ASD compositions	ASD		appropriate ASD compositions		OGER	Site	ASD	P51689	positions	The experimental stability results were in very good agreement with predictions confirming that PC-SAFT and the Kwei equation are suitable predictive tools for determining appropriate ASD compositions and storage conditions to ensure long-term physical stability.
28287093	6	26	part_of	sites	1116:1120	arg1	ApoC-III	ApoC-III		sites		PUBTATOR	Site	ApoC-III	345	sites	HDL that increased IL-6 secretion were enriched in ApoC-III, di-sialylated glycans at multiple A1AT glycosylation sites and desialylated A2HSG, and depleted in mono-sialylated ApoC-III (ApoC-III1).
28287093	6	78	part_of	A1AT	1097:1100	arg1	multiple A1AT glycosylation sites	A1AT		multiple A1AT glycosylation sites		PUBTATOR	Site	A1AT	5265	sites	HDL that increased IL-6 secretion were enriched in ApoC-III, di-sialylated glycans at multiple A1AT glycosylation sites and desialylated A2HSG, and depleted in mono-sialylated ApoC-III (ApoC-III1).
28552410	2	51	gly	β-1,3-glucan	458:469	arg1	cell wall core carbohydrates	-1,3			cell wall core carbohydrates	PUBTATOR		-1,3	97440		In a mouse model of fungal conidia aspiration, decreased relative levels of cell wall core carbohydrates β-1,3-glucan to chitin in A. fumigatus isolates and mutant strains were correlated with increased airway eosinophil recruitment.
26403803	0	81	part_of	pasta	51:55	arg1	the composition	pasta		the composition		OGER	Site	pasta	Q9Y2W3	position	Metabolomic analysis can detect the composition of pasta enriched with fibre after cooking.
25754046	6	27	part_of	PEG-chitosan	1009:1020	arg1	PEG-chitosan copolymer composition	PEG		PEG-chitosan copolymer composition		OGER	Site	PEG	P09466	position	It is worth mentioning that a new versatile approach based on IR spectroscopy has been developed to determine PEG-chitosan copolymer composition as well as composition of copolymer-enzyme conjugates.
28420224	11	66	part_of	AL/HA/SF	1582:1589	arg1	the AL/HA/SF composite	AL/HA/SF		the AL/HA/SF composite		Cterm	Site	AL/HA/SF	693047	composite	We concluded that the AL/HA/SF composite could be effective as a scaffold for bone tissue engineering.
28747495	9	40	gly	glycoprotein	1851:1862	arg1	the gp120 envelope glycoprotein	the gp120 envelope glycoprotein				Fterm		glycoprotein			IMPORTANCE Approximately 50% of the mass of the gp120 envelope glycoprotein of both HIV and SIV is N-linked carbohydrate.
28854241	7	20	part_of	Ti3C2Tx	1065:1071	arg1	the Ti3C2Tx /CNC/PVA composites	Ti3C2Tx /CNC		the Ti3C2Tx /CNC/PVA composites		OGER	Site	Ti3C2Tx /CNC	P32418	composites	Improved mechanical and electrical characteristics of the Ti3C2Tx /CNC/PVA composites make them viable materials for high performance energy applications.
28854241	7	23	part_of	/CNC/PVA	1073:1080	arg1	the Ti3C2Tx /CNC/PVA composites	PVA		the Ti3C2Tx /CNC/PVA composites		OGER	Site	PVA	P32926	composites	Improved mechanical and electrical characteristics of the Ti3C2Tx /CNC/PVA composites make them viable materials for high performance energy applications.
28287093	5	42	gly	di-sialylated	943:955	arg1	ApoC-III2	ApoC-III2				Cterm		ApoC-III2	345		HDL from HD patients were enriched in SAA, LBP, ApoC-III, di-sialylated ApoC-III (ApoC-III2) and desialylated A2HSG.
28287093	5	42	gly	di-sialylated	943:955	arg1	di-sialylated ApoC-III	di-sialylated ApoC-III				PUBTATOR		ApoC-III	345		HDL from HD patients were enriched in SAA, LBP, ApoC-III, di-sialylated ApoC-III (ApoC-III2) and desialylated A2HSG.
28287093	5	69	gly	desialylated	982:993	arg1	desialylated A2HSG	desialylated A2HSG				PUBTATOR		A2HSG	197		HDL from HD patients were enriched in SAA, LBP, ApoC-III, di-sialylated ApoC-III (ApoC-III2) and desialylated A2HSG.
28396675	14	88	gly	glycosylation	2108:2120	arg1	pharmacological proteins	pharmacological proteins				Fterm		proteins			These data represent an important step toward humanizing the glycosylation of pharmacological proteins expressed in N. tabacum BY-2 cells.
26908829	0	49	part_of	HDL	45:47	arg1	HDL subspecies composition	HDL		HDL subspecies composition		OGER	Site	HDL	Q9UNE0	position	The effects of apolipoprotein B depletion on HDL subspecies composition and function.
27274950	11	4	part_of	[CS/CEL+KER	2087:2097	arg1	the [CS/CEL+KER] composites	CS/CEL		the [CS/CEL+KER] composites		OGER	Site	CS/CEL	P19835	composites	As anticipated, results of tensile strength and TGA confirm that adding CEL or CS into KER substantially increase the mechanical strength and thermal stability of the [CS/CEL+KER] composites.
26957414	9	115	part_of	glycoproteins	1166:1178	arg1	the glycosylation sites	glycoproteins		the glycosylation sites		Fterm	Site	glycoproteins		sites	ISF was employed to study the glycosylation sites of three model glycoproteins, including fetuin, α1-acid glycoprotein and porcine thyroglobulin.
24783808	3	82	gly	glycoproteins	319:331	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			This investigation was carried out to study the effect of ginger on glycoproteins of Raji cells.
25439942	2	19	part_of	BC/PAM	310:315	arg1	the BC/PAM composite	BC/PAM		the BC/PAM composite		PUBTATOR	Site	BC/PAM	5066	composite	Effects of reaction conditions of the BC/PAM composite were investigated on its microstructure, mechanical properties and thermal stabilities.
27274950	6	61	part_of	[CEL+CS	1293:1299	arg1	the [CEL+CS] composites	CEL		the [CEL+CS] composites		OGER	Site	CEL	P19835	composites	Results obtained with this method agree well with those by XRD, namely they indicate that although KER retains its second structure when incorporated into the [CEL+CS] composites, it has relatively lower α-helix, higher β-turn and random form compared to that of the KER in native wool.
26687036	5	61	gly	glycoproteins	645:657	arg1	parasite glycoproteins	parasite glycoproteins				Fterm		glycoproteins			In this study, we aimed to globally profile parasite glycoproteins using a bioorthogonal chemical reporter strategy.
27695962	3	2	gly	glycopeptides	597:609	arg2	azide-labeled intact glycopeptides			azide-labeled intact glycopeptides						glycopeptides	Previously, we developed isotope-targeted glycoproteomics (IsoTaG) as a mass-independent mass spectrometry method to characterize azide-labeled intact glycopeptides from complex proteomes.
25453286	4	26	part_of	CCS/BT	616:621	arg1	the CCS/BT composite	CCS		the CCS/BT composite		OGER	Site	CCS	O14618	composite	The adsorption of Amido Black 10B onto the CCS/BT composite was found to be optimal at pH 2.
28287093	8	72	gly	glycoprotein	1501:1512	arg1	HDL glycoprotein composition	HDL glycoprotein composition				OGER		HDL glycoprotein	Q9UNE0		Our results demonstrate that HDL glycoprotein composition, including the site-specific glycosylation, differentiate between clinical groups, correlate with HDL's immunomodulatory capacity, and may be predictive of HDL's ability to protect from infection.
26891290	3	39	part_of	ZnO/CD/Cfp	496:505	arg1	ZnO/CD/Cfp composites	Cfp		ZnO/CD/Cfp composites		OGER	Site	Cfp	P27918	composites	The efficient release of cefepime was correlated with an increased anti-biofilm activity of ZnO/CD/Cfp composites.
24831253	2	83	gly	sialylated	508:517	arg1	sialylated glycan species				sialylated glycan species						Matrix-assisted laser desorption/ionization (MALDI) time-of-fight (TOF) mass spectrometry (MS) can be performed to study glycosylation in a high-throughput manner, but is hampered by the instability and ionization bias experienced by sialylated glycan species.
25273383	2	55	gly	Sp7	395:397	arg1	the complete lipopolysaccharide	Sp7			the complete lipopolysaccharide	OGER		Sp7	Q8TDD2		To study changes in the electro-optical (EO) properties of the suspensions, we used antibodies generated to the complete lipopolysaccharide of A. brasilense type strain Sp7 and also antibodies to the smooth and rough O polysaccharides of Sp7.
25273383	2	19	gly	Sp7	464:466	arg1	the smooth and rough O polysaccharides	Sp7			the smooth and rough O polysaccharides	OGER		Sp7	Q8TDD2		To study changes in the electro-optical (EO) properties of the suspensions, we used antibodies generated to the complete lipopolysaccharide of A. brasilense type strain Sp7 and also antibodies to the smooth and rough O polysaccharides of Sp7.
24616168	4	41	part_of	proteins	547:554	arg1	composition	proteins		composition		Fterm	Site	proteins		position	Inspired by the structure and composition of these adhesive proteins, dopamine-modified hyaluronic acid (HA-DN) prepared by carbodiimide chemistry is used to form thin and surface-adherent dopamine films.
28527999	6	12	part_of	OGP	921:923	arg1	OGP peptides	OGP		OGP peptides		OGER	Site	OGP	Q12889	peptides	Additionally, the association among collagen, apatite, and OGP peptides enhanced cell growth compared with OGP-containing BC-Ap.
27500601	3	83	gly	glycoproteins	875:887	arg1	homogeneous M6P-containing glycoproteins	homogeneous M6P-containing glycoproteins				Fterm		glycoproteins			The method includes the chemical synthesis of glycan oxazolines with varied number and location of the M6P moieties and their transfer to the GlcNAc-protein by an endoglycosynthase to provide homogeneous M6P-containing glycoproteins.
24783808	10	58	gly	O-glycoprotein	1170:1183	arg1	the O-glycoprotein	the O-glycoprotein				Fterm		O-glycoprotein			O-linked galactose and O-linked sialic acids were identified with the O-glycoprotein.
27695962	5	0	gly	glycoproteins	905:917	arg1	192 glycoproteins	192 glycoproteins				Fterm		glycoproteins			Using an Orbitrap Fusion Tribrid mass spectrometer, we identified 699 intact glycopeptides from 192 glycoproteins.
27695962	5	26	gly	glycopeptides	882:894	arg2	699 intact glycopeptides	glycoproteins		glycopeptides		Fterm		glycoproteins		glycopeptides	Using an Orbitrap Fusion Tribrid mass spectrometer, we identified 699 intact glycopeptides from 192 glycoproteins.
28396675	1	21	gly	glycoproteins	272:284	arg1	pharmacological glycoproteins	pharmacological glycoproteins				Fterm		glycoproteins			Plants or plant cells can be used to produce pharmacological glycoproteins such as antibodies or vaccines.
29022841	3	15	part_of	elastase	822:829	arg1	a fluorescent elastase tripeptide	elastase		a fluorescent elastase tripeptide		PUBTATOR	Site	elastase	1991	tripeptide	We present here biosensors with a nanocellulosic transducer surface (nanocrystals, nanocellulose composites, and nanocellulosic aerogels) immobilized with a fluorescent elastase tripeptide or tetrapeptide biomolecule, which has selectivity and affinity for human neutrophil elastase present in chronic wound fluid.
24368285	3	50	gly	used	557:560	arg2	the nanocomposites			the nanocomposites						nanocomposites	Based on the swelling-contraction characteristics of agarose gel and the adjustable localized surface plasmon resonance (LSPR) of the gold nanoparticles, the nanocomposites were used as surface enhanced Raman scattering (SERS) substrate to detect the Raman signal molecules (NBA, MBA, 1NAT).
26957414	0	117	gly	glycopeptides	50:62	arg2	in-source fragmented glycopeptides			in-source fragmented glycopeptides						glycopeptides	Parallel data acquisition of in-source fragmented glycopeptides to sequence the glycosylation sites of proteins.
26957414	0	97	gly	glycosylation	80:92	arg2	the glycosylation sites	proteins		sites		Fterm		proteins		sites	Parallel data acquisition of in-source fragmented glycopeptides to sequence the glycosylation sites of proteins.
24699819	12	98	gly	glycosylated	1654:1665	arg1	glycosylated and secreted proteins	glycosylated and secreted proteins				Fterm		proteins			Fourth, metabolic labelling reveals a near-complete loss of glycosylated and secreted proteins from treated cells, whereas cytosolic proteins are unaffected.
28287093	7	24	gly	glycoproteins	1453:1465	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			Subgroup analysis on HD patients who experienced an infectious hospitalization event within 60 days (HD+) (n = 12), vs. those with no event (HD-) (n = 12) showed that HDL from HD+ patients were enriched in SAA but had lower levels of sialylation across glycoproteins.
28287093	4	65	gly	interleukin	752:762	arg1	lipopolysaccharide-stimulated monocytes	interleukin 6			lipopolysaccharide-stimulated monocytes	PUBTATOR		interleukin 6	3569		Secretion of interleukin 6 (IL-6) in lipopolysaccharide-stimulated monocytes was used as a prototypical assay of HDL's immunomodulatory capacity.
23909489	0	9	part_of	Impact	0:5	arg1	gut microbiota composition	Impact		gut microbiota composition		OGER	Site	Impact	Q9P2X3	position	Impact of galacto-oligosaccharides on the gut microbiota composition and metabolic activity upon antibiotic treatment during in vitro fermentation.
26855011	6	48	part_of	protein	1038:1044	arg1	the amino acid sequence	protein		the amino acid sequence		Fterm	Site	protein		sequence	From the amino acid sequence, immunoreactivity, and properties of the recombinant protein, Intl-3 was considered the intestinal lectin identified by the anti-XEEL antibody.
26428179	3	11	part_of	n-HApCS	526:532	arg1	The resulting Fe3O4@n-HApCS nanocomposite	HApCS		The resulting Fe3O4@n-HApCS nanocomposite		OGER	Site	HApCS	P02743	nanocomposite	The resulting Fe3O4@n-HApCS nanocomposite was characterized by FTIR and SEM with EDAX techniques.
27711252	2	79	part_of	have	309:312	arg1	The secreted proteins AND a conserved carboxy-terminal domain	The secreted proteins		a conserved carboxy-terminal domain		Fterm	Site	proteins		domain	The secreted proteins have a conserved carboxy-terminal domain essential for type IX secretion that is cleaved upon export.
24492609	5	22	gly	glycoform	984:992	arg1	only one major oligosaccharide glycoform				only one major oligosaccharide glycoform						MS analyses also provided evidence for expression of only one major oligosaccharide glycoform, which lacked the terminal galactose residue as expected from inactivation of the lgtB gene.
28177490	5	60	gly	3-deoxy-D-manno-oct-2-ulopyranosonic	463:498	arg1	Kdo	oct-2			Kdo	OGER		oct-2	P09086		The analyses revealed the presence of rhamnose, xylose, mannose, glucose, galacturonic acid, phosphates, 3-deoxy-D-manno-oct-2-ulopyranosonic acid (Kdo) and fatty acids (10:0, 11:0, 11:0(3-OH) i/a, 11:0(3-OH), 12:0(3-OH) i/a, 12:0(3-OH), 12:0, 13:0(3-OH) i, 13:0(3-OH) a, 13:0(3-OH), 14:0(3-OH) i/a, 14:0(3-OH) and 16:0).
26957414	8	37	gly	glycoproteins	1086:1098	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			A 45 V ISF voltage was found to be the most efficient voltage for the analysis of glycoproteins.
26283165	10	123	gly	used	1843:1846	arg2	Laser micromachined collagen-alginate composites			Laser micromachined collagen-alginate composites						composites	Laser micromachined collagen-alginate composites containing hMSCs can be used to bridge soft tissue defects with the capacity for enhanced tissue repair and integration.
28429501	1	76	part_of	protein	195:201	arg1	an ideal amino acid composition	protein		an ideal amino acid composition		Fterm	Site	protein		position	BACKGROUND Wheat gluten comprises a good quality and inexpensive vegetable protein with an ideal amino acid composition.
24333423	6	36	gly	protein	777:783	arg1	a histidine-tag	HAS2 protein			a histidine-tag	PUBTATOR		HAS2 protein	3037		To directly evaluate the effects of cholesterol on HAS activity, a recombinant human HAS2 protein with a histidine-tag was expressed as a membrane protein by using a baculovirus system, then successfully solubilized, and isolated by affinity chromatography.
25817663	11	63	gly	used	1369:1372	arg2	these bio-nano composites			these bio-nano composites						composites	After evaluating these properties of BNCFs, we came to conclusion that these bio-nano composites can be used for packaging applications.
25633223	0	30	part_of	cellulose/PEO-b-PPO-b-PEO	91:115	arg1	in situ synthesized bacterial cellulose/PEO-b-PPO-b-PEO biocomposites	PEO		in situ synthesized bacterial cellulose/PEO-b-PPO-b-PEO biocomposites		PUBTATOR	Site	PEO	56652	biocomposites	Nano- and macroscale structural and mechanical properties of in situ synthesized bacterial cellulose/PEO-b-PPO-b-PEO biocomposites.
24431079	8	48	gly	glycosylation	1239:1251	arg2	positions 5, 6, and 7			positions 5, 6, and 7,						positions 5, 6, and 7,	SAR analysis indicated that the presence of a 2,3-double bond in the C ring, hydroxylation at positions 5, 6, and 7, and glycosylation had important effects on flavonoid-CYP2C interactions.
28287093	1	41	part_of	HDL	225:227	arg1	HDL glycoprotein composition	HDL glycoprotein		HDL glycoprotein composition		OGER	Site	HDL glycoprotein	Q9UNE0	position	The goal of this pilot study was to determine whether HDL glycoprotein composition affects HDL's immunomodulatory function.
28287093	1	47	part_of	glycoprotein	229:240	arg1	HDL glycoprotein composition	HDL glycoprotein		HDL glycoprotein composition		OGER	Site	HDL glycoprotein	Q9UNE0	position	The goal of this pilot study was to determine whether HDL glycoprotein composition affects HDL's immunomodulatory function.
26820350	7	24	part_of	CCS/BT	989:994	arg1	the CCS/BT composite	CCS		the CCS/BT composite		OGER	Site	CCS	O14618	composite	The adsorption of CR onto the CCS was mainly controlled by chemisorption while the adsorption of CR onto the CCS/BT composite was controlled by chemisorption and the electrostatic attraction.
28655159	6	41	gly	pro-inflammatory	915:930	arg1	the pro-inflammatory hexa-acylated lipopolysaccharide variant			pro	the pro-inflammatory hexa-acylated lipopolysaccharide variant					pro	Metacommunity-specific functional shifts in CD showed enrichment in producers of the pro-inflammatory hexa-acylated lipopolysaccharide variant and a reduction in the potential to synthesize short-chain fatty acids.
29133098	3	17	gly	homogeneity	568:578	arg1	MCP	MCP				OGER		MCP	P40121		The molar mass (Mw), degree of esterification (DE), monosaccharide composition, 13C NMR spectra, homogeneity, morphology (SEM) and rheological behavior of both native and modified citrus pectins (MCP) were investigated.
29273221	10	65	gly	METS	1312:1315	arg1	glycosaminoglycan (GAG) content			METS	glycosaminoglycan (GAG) content					METS	Compressive mechanical properties and glycosaminoglycan (GAG) content of METS and individual constructs increased significantly over time.
28986683	4	36	part_of	HAp-CTS	491:497	arg1	HAp-CTS composites	HAp		HAp-CTS composites		OGER	Site	HAp	Q15424	composites	First of all, HAp-CTS composites are produced in the presence of simulated body fluid (SBF).
24928668	7	49	part_of	rhBMP-2	1074:1080	arg1	The rhBMP-2 powder gel composite	rhBMP-2		The rhBMP-2 powder gel composite		OGER	Site	rhBMP-2	P12643	composite	The rhBMP-2 powder gel composite improved osseointegration of the dental implant by increasing the amount of new bone formation in the implant pitch and it improved the bone quality and bone quantity of new bone.
27865958	8	3	part_of	CS-PEG	1241:1246	arg1	CS-PEG (55:30wt%) composite	PEG		CS-PEG (55:30wt%) composite		OGER	Site	PEG	P09466	composite	Addition of 15wt% HA-ZrO2 (having 0.3wt% ZrO2 NPs) into CS-PEG (55:30wt%) composite resulted in greatest mechanical strength, porosity, antimicrobial property and cytocompatibility along with suitable water absorption capacity and compatibility with human pH and blood.
28507244	6	16	gly	Oritavancin	1541:1551	arg1	a lipoglycopeptide			a lipoglycopeptide						lipoglycopeptide	The changes in peptidoglycan composition suggest that desleucyl-oritavancin targets the peptidoglycan template to induce cell wall disorder and interferes with cell wall maturation.IMPORTANCE Oritavancin is a lipoglycopeptide antibiotic with a secondary binding site that targets the cross-linked peptidoglycan bridge structure in the cell wall.
28507244	6	75	gly	lipoglycopeptide	1558:1573	arg2	a lipoglycopeptide			a lipoglycopeptide						lipoglycopeptide	The changes in peptidoglycan composition suggest that desleucyl-oritavancin targets the peptidoglycan template to induce cell wall disorder and interferes with cell wall maturation.IMPORTANCE Oritavancin is a lipoglycopeptide antibiotic with a secondary binding site that targets the cross-linked peptidoglycan bridge structure in the cell wall.
24269369	12	42	part_of	sites	1571:1575	arg1	VaH4-A	VaH4		sites		Cterm	Site	VaH4		sites	The two possible N-glycosylation sites in VaH4-A are located at completely different positions from those in homodimeric P-IIIc VaH3 from the same venom, however, without any evident functional implications.
27048796	3	1	part_of	scaffoldin	536:545	arg1	the scaffoldin polypeptide	scaffoldin		the scaffoldin polypeptide		Fterm	Site	scaffoldin		polypeptide	This scaffoldin represented a technical limit of sorts, since adding another cohesin proved problematic, owing to resultant low expression levels, instability (cleavage) of the scaffoldin polypeptide, and limited numbers of available cohesin-dockerin specificities-the hallmark of designer cellulosomes.
28420224	1	16	part_of	fibroin	242:248	arg1	alginate (AL), AL/hydroxyapatite (HA), and AL/HA/silk fibroin (SF) composites	fibroin		alginate (AL), AL/hydroxyapatite (HA), and AL/HA/silk fibroin (SF) composites		PUBTATOR	Site	fibroin	693047	composites	The aim of this study was to evaluate the in vivo bone regeneration capability of alginate (AL), AL/hydroxyapatite (HA), and AL/HA/silk fibroin (SF) composites.
28321788	3	7	part_of	composition	632:642	arg1	SCC	SCC		composition		PUBTATOR	Site	SCC	102657198	position	The objectives of the current study were to describe the antibiotic resistance of A. viridans from bovine mastitis as well as the correlation between existence of this pathogen in udders and the somatic cell counts (SCC), daily milk yield, and composition of individual cow.
27112884	1	88	gly	used	309:312	arg2	nanotubular halloysite			nanotubular halloysite						halloysite	Three natural clay-based microstructures, namely layered montmorillonite (MMT), nanotubular halloysite (HNT) and micro-fibrillar sepiolite (SP) were used for the synthesis of hybrid chitosan-clay thin films and porous aerogel microspheres.
29279118	7	81	part_of	NPs/hydrogel	1558:1569	arg1	NPs/hydrogel composite	NPs		NPs/hydrogel composite		OGER	Site	NPs	P0C0P7	composite	Our research indicated the in situ formation of NPs/hydrogel composite could provide temporal sequence-release of SDF-1α and CTH/antimiR-138 NPs for on-demand MSCs homing and cranial bone regeneration.
26050895	6	28	gly	pulp	956:959	arg1	the extracted pectin	pectin			pulp	Fterm		pectin			Moreover, from the results of emulsifying properties study, the extracted pectin from sugar beet pulp could prepare steady oil-in-water emulsions.
27274950	1	29	part_of	[CEL/CS+KER	222:232	arg1	[CEL/CS+KER] composites	CEL		[CEL/CS+KER] composites		OGER	Site	CEL	P19835	composites	A method was developed in which cellulose (CEL) and/or chitosan (CS) were added to keratin (KER) to enable [CEL/CS+KER] composites formed to have better mechanical strength and wider utilization.
24783808	6	21	gly	glycoproteins	665:677	arg1	their glycoproteins	their glycoproteins				Fterm		glycoproteins			Cell extracts were prepared and their glycoproteins purified using lectin-affinity chromatography (Q proteome total glycoprotein and O glycoprotein kits) and SDS PAGE was carried out.
24783808	6	26	gly	glycoprotein	762:773	arg1	O glycoprotein	O glycoprotein				Fterm		glycoprotein			Cell extracts were prepared and their glycoproteins purified using lectin-affinity chromatography (Q proteome total glycoprotein and O glycoprotein kits) and SDS PAGE was carried out.
24783808	6	71	gly	glycoprotein	743:754	arg1	proteome total glycoprotein	proteome total glycoprotein				Fterm		glycoprotein			Cell extracts were prepared and their glycoproteins purified using lectin-affinity chromatography (Q proteome total glycoprotein and O glycoprotein kits) and SDS PAGE was carried out.
26092170	2	7	part_of	n-HAp	478:482	arg1	Fe3O4@n-HAp composite	HAp		Fe3O4@n-HAp composite		OGER	Site	HAp	Q15424	composite	The synthesized Fe3O4@n-HApAlg biocomposite possess an enhanced defluoridation capacity (DC) of 4050 mgF(-)/kg when compare to n-HApAlg composite, Fe3O4@n-HAp composite, n-HAp and Fe3O4 which possesses the DCs of 3870, 2469, 1296 and 1050 mgF(-)/kg respectively.
28396675	3	56	gly	1,3	624:626	arg1	plant-specific glycans	(1,3)-fucosyltransferase			plant-specific glycans	PUBTATOR		(1,3)-fucosyltransferase	107767349		Two enzymes are responsible for the addition of plant-specific glycans: β(1,2)-xylosyltransferase (XylT) and α(1,3)-fucosyltransferase (FucT).
28396675	3	94	gly	-xylosyltransferase	591:609	arg1	β(1,2)-xylosyltransferase (XylT) and α(1,3)-fucosyltransferase	(1,2)-xylosyltransferase			β(1,2)-xylosyltransferase (XylT) and α(1,3)-fucosyltransferase	PUBTATOR		(1,2)-xylosyltransferase	107760241		Two enzymes are responsible for the addition of plant-specific glycans: β(1,2)-xylosyltransferase (XylT) and α(1,3)-fucosyltransferase (FucT).
28396675	3	94	gly	-xylosyltransferase	591:609	arg1	FucT	(1,2)-xylosyltransferase			FucT	PUBTATOR		(1,2)-xylosyltransferase	107760241		Two enzymes are responsible for the addition of plant-specific glycans: β(1,2)-xylosyltransferase (XylT) and α(1,3)-fucosyltransferase (FucT).
28396675	3	94	gly	-xylosyltransferase	591:609	arg1	plant-specific glycans	(1,2)-xylosyltransferase			plant-specific glycans	PUBTATOR		(1,2)-xylosyltransferase	107760241		Two enzymes are responsible for the addition of plant-specific glycans: β(1,2)-xylosyltransferase (XylT) and α(1,3)-fucosyltransferase (FucT).
28396675	3	100	gly	1,2	587:589	arg1	β(1,2)-xylosyltransferase (XylT) and α(1,3)-fucosyltransferase	(1,2)-xylosyltransferase			β(1,2)-xylosyltransferase (XylT) and α(1,3)-fucosyltransferase	PUBTATOR		(1,2)-xylosyltransferase	107760241		Two enzymes are responsible for the addition of plant-specific glycans: β(1,2)-xylosyltransferase (XylT) and α(1,3)-fucosyltransferase (FucT).
28396675	3	100	gly	1,2	587:589	arg1	FucT	(1,2)-xylosyltransferase			FucT	PUBTATOR		(1,2)-xylosyltransferase	107760241		Two enzymes are responsible for the addition of plant-specific glycans: β(1,2)-xylosyltransferase (XylT) and α(1,3)-fucosyltransferase (FucT).
28396675	3	100	gly	1,2	587:589	arg1	plant-specific glycans	(1,2)-xylosyltransferase			plant-specific glycans	PUBTATOR		(1,2)-xylosyltransferase	107760241		Two enzymes are responsible for the addition of plant-specific glycans: β(1,2)-xylosyltransferase (XylT) and α(1,3)-fucosyltransferase (FucT).
26772799	1	60	part_of	ART	135:137	arg1	articular (ART) cartilage composition	ART		articular (ART) cartilage composition		OGER	Site	ART	O00253	position	It is well-accepted that articular (ART) cartilage composition and tissue architecture are intimately related to mechanical properties.
25381909	3	46	gly	presence	471:478	arg2	a therapeutic protein AND O-linked glycans	a therapeutic protein			O-linked glycans	Fterm		protein			However, in certain cases, the presence of O-linked glycans on a therapeutic protein may not be desirable.
25453286	7	29	part_of	CCS/BT	971:976	arg1	CCS/BT composite	CCS		CCS/BT composite		OGER	Site	CCS	O14618	composite	The calculated thermodynamic parameters showed that the adsorption of Amido Black 10B by CCS/BT composite was spontaneous and endothermic in nature.
27913288	3	40	part_of	resilin-poor	629:640	arg1	resilin-poor sites	resilin		resilin-poor sites		Fterm	Site	resilin		sites	After two-photon excitation at 720 nm, regions recently characterised as being rich in resilin showed a longer bimodal distribution of the mean autofluorescence lifetime τm (tau-m) at 0.4 ns and 1.0-1.5 ns, while resilin-poor sites exhibited a unimodal pattern with a peak around 0.8 ns.
24616065	2	47	part_of	containing	458:467	arg1	the rare heparin pentasaccharide sequence AND a 3,6-O-sulfated N-sulfoglucosamine residue	the rare heparin pentasaccharide sequence		a 3,6-O-sulfated N-sulfoglucosamine residue						residue	The minimal structural requirements for AT-III binding are contained in the rare heparin pentasaccharide sequence containing a 3,6-O-sulfated N-sulfoglucosamine residue.
27308202	1	14	gly	epitope	408:414	arg1	oligosaccharide epitope structure				oligosaccharide epitope structure						Conventional glycoconjugate vaccines are prepared with polysaccharides isolated from bacterial fermentation, an approach with some significant drawbacks such as handling of live bacterial strains, the presence of biological impurities, and inter-batch variations in oligosaccharide epitope structure.
25633939	3	25	part_of	CCS/BT	459:464	arg1	CCS/BT composite	CCS		CCS/BT composite		OGER	Site	CCS	O14618	composite	The adsorption of MO onto CCS/BT composite was affected by the ratio of chitosan to BT and contact time.
26187194	1	55	gly	used	218:221	arg2	a graphene oxide/chitosan/FeOOH (GO/Ch/FeOOH) nanostructured composite			a graphene oxide/chitosan/FeOOH (GO/Ch/FeOOH) nanostructured composite						composite	In the present study, a graphene oxide/chitosan/FeOOH (GO/Ch/FeOOH) nanostructured composite was prepared and used as an adsorbent for the removal of Pb(II) ions from aqueous solution.
27287318	15	122	gly	enzymes	2486:2492	arg1	the same peptidoglycan cleavage specificity	enzymes			the same peptidoglycan cleavage specificity	Fterm		enzymes			Three-dimensional structure predictions for Gp110 suggest a fold that is completely different from that of known structures of enzymes with the same peptidoglycan cleavage specificity, making this endolysin quite unique.
28774805	7	17	part_of	CTS-OMMT-HAP	1335:1346	arg1	previously reported CTS-OMMT-HAP composite	HAP		previously reported CTS-OMMT-HAP composite		OGER	Site	HAP	Q15424	composite	Addition of 0.1wt% of ZnO nanoparticles into CTS-OMMT-HAP significantly enhanced the tensile strengths of ZnCMH I-III compared to previously reported CTS-OMMT-HAP composite.
28832260	1	18	part_of	chitosan/gelatin/keratin	198:221	arg1	chitosan/gelatin/keratin composite	gelatin		chitosan/gelatin/keratin composite		Fterm	Site	gelatin		composite	The aim of this research was to develop chitosan/gelatin/keratin composite containing hydrocortisone sodium succinate as a buccal mucoadhesive patch to treat desquamative gingivitis, which was fabricated through an environmental friendly process.
24520193	9	111	gly	DMAPA	1585:1589	arg1	residues			residues						residues	RESULTS The hyperbranched cationic glycogen derivatives conjugated with DMAPA and AEPZ residues were synthesized.
25439942	1	45	part_of	BC/PAM	148:153	arg1	a bacterial cellulose/polyacrylamide (BC/PAM) double network composite	BC/PAM		a bacterial cellulose/polyacrylamide (BC/PAM) double network composite		PUBTATOR	Site	BC/PAM	5066	composite	In this work, a bacterial cellulose/polyacrylamide (BC/PAM) double network composite was prepared to act as the template for in situ synthesis of silver nanoparticles (AgNPs).
28747495	4	56	gly	polypeptide	809:819	arg1	GalNAcT1	polypeptide N-acetylgalactosaminyltransferase 1			GalNAcT1	PUBTATOR		polypeptide N-acetylgalactosaminyltransferase 1	2589		When HIV virions were generated in cells overexpressing polypeptide N-acetylgalactosaminyltransferase 1 (GalNAcT1), viral infectivity was increased 2.5-fold compared to that of virus produced in wild-type HEK293T cells; infectivity was increased 8-fold when the Thr499Ser mutant was used.
26746104	9	41	gly	attached	1598:1605	arg2	membrane proteins AND oligomannose and complex type N-glycans	membrane proteins			oligomannose and complex type N-glycans	Fterm		proteins			CONCLUSIONS This method can be used as a new analytical tool for reliable detection and quantification of oligomannose and complex type N-glycans attached to membrane proteins, thus serving to distinguish between differences in cell types and states.
26908829	8	1	part_of	HDL	1269:1271	arg1	HDL composition	HDL		HDL composition		OGER	Site	HDL	Q9UNE0	position	Thus, each of the apoB precipitation methods affected HDL composition and/or size distribution.
29080509	3	39	part_of	CEL-iGEL	429:436	arg1	The CEL-iGEL composites	CEL		The CEL-iGEL composites		PUBTATOR	Site	CEL	P19835	composites	The CEL-iGEL composites undergo reversible bending already at ±500mV step-voltage values.
24269369	6	16	part_of	possess	882:888	arg1	VaH4-A AND the Cys174	VaH4		Cys174		Cterm	AminoAcid	VaH4		Cys174	However, neither VaH4-A nor VaH4-B possess the Cys174 involved in the inter-subunit disulphide bond of P-III SVMPs.
26423601	11	53	part_of	ECM	1715:1717	arg1	ECM deposition	ECM		ECM deposition		OGER	Site	ECM	Q13201	position	As decorin inhibits the activity of specific growth factors, its reduced level in the leiomyoma cell microenvironment may promote cell proliferation and ECM deposition.
26529192	3	21	gly	used	572:575	arg2	A 50/50 composition			A 50/50 composition						position	A 50/50 composition of aloe vera/curcumin was used to fabricate OP-Gel-Aloe Curcumin dressings.
27349789	9	14	part_of	NELL-1	1436:1441	arg1	the NELL-1 integrated composite	NELL-1		the NELL-1 integrated composite		PUBTATOR	Site	NELL-1	4745	composite	Collectively, this study suggests that the osteogenic protein NELL-1 showed a sustained release pattern after being encapsulated into the modified Chi/HA-TCP particles, and the NELL-1 integrated composite of Chi/HA-TCP showed a potential to function as a protein delivery carrier and as an improved bone matrix for use in bone regeneration research.
28549117	6	9	part_of	WFA	1041:1043	arg1	Cys-272	WFA		Cys-272		Cterm	SpecificSite	WFA		Cys-272	Moreover, the engineered WFA with an amino acid substitution in Cys-272 yielded a recombinant monomeric lectin with limited binding specificity but wild-type affinity for GalNAc-terminated glycans, specifically GalNAcβ1,4GlcNAc.
25779605	2	73	part_of	NPs	431:433	arg1	composition	Fe3O4/CMCS-Rapa NPs		composition		OGER	Site	Fe3O4/CMCS-Rapa NPs	Q96PN7	position,	The morphology, composition, and properties of the Fe3O4/CMCS-Rapa NPs were characterized by Fourier transform infrared spectroscopy (FT-IR), transmission electron microscope (TEM), X-ray diffraction (XRD), thermal analysis (TG/DSC), vibration sample magnetometer (VSM), and drug release kinetics, cytotoxicity, cellular uptake, apoptosis studies in vitro.
27810279	3	2	part_of	Dacron-HEP	377:386	arg1	a magnetic Dacron-HEP composite	HEP		a magnetic Dacron-HEP composite		OGER	Site	HEP	O15197	composite	In this study, an affinity procedure based on a magnetic Dacron-HEP composite is proposed.
26820350	5	35	part_of	CCS/BT	728:733	arg1	CCS/BT composite	CCS		CCS/BT composite		OGER	Site	CCS	O14618	composite	The adsorption capacities of CCS and CCS/BT composite at 298K and natural pH value were 405 and 500 mg/g, respectively.
28287093	6	3	gly	desialylated	1126:1137	arg1	desialylated A2HSG	desialylated A2HSG				PUBTATOR		A2HSG	197		HDL that increased IL-6 secretion were enriched in ApoC-III, di-sialylated glycans at multiple A1AT glycosylation sites and desialylated A2HSG, and depleted in mono-sialylated ApoC-III (ApoC-III1).
28287093	6	5	gly	mono-sialylated	1162:1176	arg1	ApoC-III1	ApoC-III1				Cterm		ApoC-III1	345		HDL that increased IL-6 secretion were enriched in ApoC-III, di-sialylated glycans at multiple A1AT glycosylation sites and desialylated A2HSG, and depleted in mono-sialylated ApoC-III (ApoC-III1).
28287093	6	5	gly	mono-sialylated	1162:1176	arg1	mono-sialylated ApoC-III	mono-sialylated ApoC-III				PUBTATOR		ApoC-III	345		HDL that increased IL-6 secretion were enriched in ApoC-III, di-sialylated glycans at multiple A1AT glycosylation sites and desialylated A2HSG, and depleted in mono-sialylated ApoC-III (ApoC-III1).
28287093	6	12	gly	A2HSG	1139:1143	arg1	di-sialylated glycans	A2HSG			di-sialylated glycans	PUBTATOR		A2HSG	197		HDL that increased IL-6 secretion were enriched in ApoC-III, di-sialylated glycans at multiple A1AT glycosylation sites and desialylated A2HSG, and depleted in mono-sialylated ApoC-III (ApoC-III1).
28287093	6	26	gly	sites	1116:1120	arg1	di-sialylated glycans			sites	di-sialylated glycans					sites	HDL that increased IL-6 secretion were enriched in ApoC-III, di-sialylated glycans at multiple A1AT glycosylation sites and desialylated A2HSG, and depleted in mono-sialylated ApoC-III (ApoC-III1).
28287093	6	48	gly	glycosylation	1102:1114	arg2	multiple A1AT glycosylation sites			multiple A1AT glycosylation sites						sites	HDL that increased IL-6 secretion were enriched in ApoC-III, di-sialylated glycans at multiple A1AT glycosylation sites and desialylated A2HSG, and depleted in mono-sialylated ApoC-III (ApoC-III1).
28287093	6	38	gly	di-sialylated	1063:1075	arg1	ApoC-III	ApoC-III			di-sialylated glycans	PUBTATOR		ApoC-III	345		HDL that increased IL-6 secretion were enriched in ApoC-III, di-sialylated glycans at multiple A1AT glycosylation sites and desialylated A2HSG, and depleted in mono-sialylated ApoC-III (ApoC-III1).
24928668	8	32	part_of	rhBMP-2	1324:1330	arg1	the rhBMP-2 powder gel composite	rhBMP-2		the rhBMP-2 powder gel composite		OGER	Site	rhBMP-2	P12643	composite	The histology results indicated that the rhBMP-2 powder gel composite improved the osseointegration in the cortical bone as well as the marrow space along the fixture.
28024617	7	20	part_of	ChS/PVA-BBP	899:909	arg1	ChS/PVA-BBP biocomposites	PVA		ChS/PVA-BBP biocomposites		OGER	Site	PVA	P32926	biocomposites	In vivo and ex vivo experiments revealed that ChS/PVA-BBP biocomposites are biocompatibility materials without exert pro-inflammatory responses.
27500601	2	81	gly	phosphoglycoproteins	592:611	arg1	homogeneous phosphoglycoproteins	homogeneous phosphoglycoproteins				Fterm		phosphoglycoproteins			We describe here a chemoenzymatic synthesis of homogeneous phosphoglycoproteins carrying natural M6P-containing N-glycans.
27500601	2	51	gly	carrying	613:620	arg1	homogeneous phosphoglycoproteins AND natural M6P-containing N-glycans	homogeneous phosphoglycoproteins			natural M6P-containing N-glycans	Fterm		phosphoglycoproteins			We describe here a chemoenzymatic synthesis of homogeneous phosphoglycoproteins carrying natural M6P-containing N-glycans.
26529192	3	56	part_of	vera/curcumin	554:566	arg1	A 50/50 composition	vera/curcumin		A 50/50 composition		Fterm	Site	vera/curcumin		position	A 50/50 composition of aloe vera/curcumin was used to fabricate OP-Gel-Aloe Curcumin dressings.
26820350	2	54	part_of	CCS/BT	346:351	arg1	CCS/BT composite	CCS		CCS/BT composite		OGER	Site	CCS	O14618	composite	The CCS and CCS/BT composite were characterized by X-ray diffraction (XRD) and Fourier transform infrared spectroscopy (FTIR) techniques.
28040891	0	84	gly	d-Ala-d-Lac-Terminated	22:43	arg1	the d-Ala-d-Lac-Terminated Peptidoglycan Structure			Ala	the d-Ala-d-Lac-Terminated Peptidoglycan Structure					Ala	Quantification of the d-Ala-d-Lac-Terminated Peptidoglycan Structure in Vancomycin-Resistant Enterococcus faecalis Using a Combined Solid-State Nuclear Magnetic Resonance and Mass Spectrometry Analysis.
27695962	6	9	gly	sialylated	974:983	arg1	eight sialylated glycan structures				eight sialylated glycan structures						These intact glycopeptides represent a total of eight sialylated glycan structures across 126 N- and 576 O-glycopeptides.
27695962	6	56	gly	O-glycopeptides	1025:1039	arg2	576 O-glycopeptides			576 O-glycopeptides						N- and 576 O-glycopeptides	These intact glycopeptides represent a total of eight sialylated glycan structures across 126 N- and 576 O-glycopeptides.
27695962	6	58	gly	glycopeptides	933:945	arg2	These intact glycopeptides			These intact glycopeptides						glycopeptides	These intact glycopeptides represent a total of eight sialylated glycan structures across 126 N- and 576 O-glycopeptides.
26855011	4	67	gly	N-glycosylated	685:698	arg1	N-glycosylated 39 kDa and 40.5 kDa subunit peptides			N-glycosylated 39 kDa and 40.5 kDa subunit peptides						peptides	The proteins were purified by affinity chromatography on a galactose-Sepharose column and found to be oligomers consisting of N-glycosylated 39 kDa and 40.5 kDa subunit peptides.
26957414	11	9	gly	glycopeptides	1317:1329	arg2	glycopeptides			glycopeptides						glycopeptides	Y1 ions of glycopeptides in tryptic digests of samples were detected.
26488434	1	8	gly	glycoproteins	236:248	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			Yeast cells possess a cell wall comprising primarily glycoproteins, mannans, and glucan polymers.
27199227	3	40	part_of	SA2T	423:426	arg1	The 16S rRNA gene sequence	SA2T		The 16S rRNA gene sequence		Cterm	Site	SA2T		sequence	The 16S rRNA gene sequence of strain SA2T was 99.59 % identical to that of Vibrio rumoiensis DSM 19141T and 98.19 % identical to that of Vibrio litoralis DSM 17657T.
26957414	12	80	gly	glycopeptides	1387:1399	arg2	glycopeptides			glycopeptides	different sialic acid groups					glycopeptides	Y1 ions of glycopeptides with different sialic acid groups are observed at different retention times, representing the various numbers of sialic acid moieties associated with the same peptide backbone sequence.
24616065	5	7	gly	used	998:1001	arg2	The fractional composition			The fractional composition						position	The fractional composition of 3-O-sulfo-N-sulfoglucosamine residues was determined for each drug substance using 2D NMR and used in the interpretation of the ACE results.
28747495	8	125	gly	O-glycosylation	1620:1634	arg1	the threonine residue			the threonine residue						threonine residue	Nonetheless, it remains theoretically possible that the repertoire of GalNAc transferase isoforms in natural target cells for HIV and SIV in vivo could result in O-glycosylation of the threonine residue in question and that this could boost the infectivity of virions beyond the levels seen in the absence of such O-glycosylation.
28287093	3	66	gly	α-2-HS-glycoprotein	628:646	arg1	α-2-HS-glycoprotein	α-2-HS-glycoprotein				Fterm		α-2-HS-glycoprotein			Concentrations of HDL-bound serum amyloid A (SAA), lipopolysaccharide binding protein (LBP), apolipoprotein A-I (ApoA-I), apolipoprotein C-III (ApoC-III), α-1-antitrypsin (A1AT), and α-2-HS-glycoprotein (A2HSG); and the site-specific glycovariations of ApoC-III, A1AT, and A2HSG were measured.
25877400	1	19	gly	precursor	149:157	arg1	glucose	precursor			glucose	Fterm		precursor			In this paper, Ni/β-Mo2C(S) and Ni/β-Mo2C(G) were prepared from solution-derived precursor with two different carbon sources (starch and glucose) and tested as anodic noble-metal-free catalysts in air-cathode microbial fuel cells (MFCs).
28774805	1	49	part_of	CTS/OMMT/HAP	457:468	arg1	previously reported CTS/OMMT/HAP composite	HAP		previously reported CTS/OMMT/HAP composite		OGER	Site	HAP	Q15424	composite	The objective of this study is to design biomimetic organically modified montmorillonite clay (OMMT) supported chitosan/hydroxyapatite-zinc oxide (CTS/HAP-ZnO) nanocomposites (ZnCMH I-III) with improved mechanical and biological properties compared to previously reported CTS/OMMT/HAP composite.
26428179	2	3	part_of	n-HAp	396:400	arg1	nano-hydroxyapatite (n-HAp)/chitosan (CS) nanocomposite	HAp		nano-hydroxyapatite (n-HAp)/chitosan (CS) nanocomposite		OGER	Site	HAp	Q15424	nanocomposite	In this regard, an eco-magnetic biosorbent was prepared by uniform deposition of magnetic Fe3O4 particles on the surface of nano-hydroxyapatite (n-HAp)/chitosan (CS) nanocomposite namely Fe3O4@n-HApCS composite as versatile sorbent for fluoride sorption.
27102717	12	61	gly	C	1468:1468	arg1	non-milk sugar intakes	vitamin C, 53			non-milk sugar intakes	Cterm		vitamin C, 53			F&V contributed 50 % of vitamin C, 53 % of carotene, 34 % of dietary fibre and 42 % of non-milk sugar intakes from the total diet.
27500601	4	66	gly	M6P-glycopeptides	1006:1022	arg2	bivalent M6P-glycopeptides			bivalent M6P-glycopeptides						M6P-glycopeptides	Simultaneous attachment of two M6P-oligosaccahrides to a cyclic polypeptide was also accomplished to yield bivalent M6P-glycopeptides.
27500601	1	29	gly	glycoproteins	518:530	arg1	homogeneous M6P-containing glycoproteins	homogeneous M6P-containing glycoproteins				Fterm		glycoproteins			Mannose-6-phosphate (M6P)-terminated oligosaccharides are important signals for M6P-receptor-mediated targeting of newly synthesized hydrolases from Golgi to lysosomes, but the precise structural requirement for the M6P ligand-receptor recognition has not been fully understood due to the difficulties in obtaining homogeneous M6P-containing glycoproteins.
29233912	12	94	gly	glycosylated	1639:1650	arg1	the protein	the protein				Fterm		protein			We demonstrated that two β-amylases (BA1 and BA2) are transported via the classical endoplasmic reticulum-to-Golgi pathways, and in the case of BA1, we showed that the protein is glycosylated with multiple N-linked glycans of Hex5HexNAc2 structure.
26478386	6	3	part_of	PVA	1148:1150	arg1	PVA and NaCl residues	PVA		PVA and NaCl residues		OGER	Site	PVA	P32926	residues	Process scale up resulted in a decrease of gentamicin EE% that can be attributed to the high volume of water used to remove PVA and NaCl residues.
26400336	7	88	part_of	Fracture	759:766	arg1	Fracture fragments	Fracture		Fracture fragments		Cterm	Site	Fracture		fragments	Fracture fragments and surrounding tissues, including bone grafts, marrow cavity contents, and sticking scars, were categorically sampled during surgery.
26820350	1	43	part_of	CCS/BT	315:320	arg1	CCS/BT composite	CCS		CCS/BT composite		OGER	Site	CCS	O14618	composite	Batch experiments were executed to investigate the removal of Congo red (CR) from aqueous solutions using the crosslinked chitosan (CCS) and crosslinked chitosan immobilized bentonite (CCS/BT composite).
28287093	0	27	part_of	Glycoprotein	4:15	arg1	HDL Glycoprotein Composition	HDL Glycoprotein		HDL Glycoprotein Composition		OGER	Site	HDL Glycoprotein	Q9UNE0	position	HDL Glycoprotein Composition and Site-Specific Glycosylation Differentiates Between Clinical Groups and Affects IL-6 Secretion in Lipopolysaccharide-Stimulated Monocytes.
28287093	0	31	part_of	HDL	0:2	arg1	HDL Glycoprotein Composition	HDL Glycoprotein		HDL Glycoprotein Composition		OGER	Site	HDL Glycoprotein	Q9UNE0	position	HDL Glycoprotein Composition and Site-Specific Glycosylation Differentiates Between Clinical Groups and Affects IL-6 Secretion in Lipopolysaccharide-Stimulated Monocytes.
27885831	3	8	gly	ECM	507:509	arg1	the glycosaminoglycan component	ECM			the glycosaminoglycan component	OGER		ECM	Q13201		Here, a polyanionic functionalized alginate is used to mimic the glycosaminoglycan component of the native ECM.
25633939	1	35	part_of	CCS/BT	316:321	arg1	cross-linked chitosan/bentonite (CCS/BT) composite	CCS		cross-linked chitosan/bentonite (CCS/BT) composite		OGER	Site	CCS	O14618	composite	A kind of biocomposite was prepared by the intercalation of chitosan in bentonite and the cross-linking reaction of chitosan with glutaraldehyde, which was referred to as cross-linked chitosan/bentonite (CCS/BT) composite.
24269369	12	5	gly	N-glycosylation	1555:1569	arg2	completely different positions			completely different positions						positions	The two possible N-glycosylation sites in VaH4-A are located at completely different positions from those in homodimeric P-IIIc VaH3 from the same venom, however, without any evident functional implications.
24269369	12	5	gly	N-glycosylation	1555:1569	arg2	The two possible N-glycosylation sites			The two possible N-glycosylation sites						sites	The two possible N-glycosylation sites in VaH4-A are located at completely different positions from those in homodimeric P-IIIc VaH3 from the same venom, however, without any evident functional implications.
28287093	8	2	part_of	glycoprotein	1501:1512	arg1	HDL glycoprotein composition	HDL glycoprotein		HDL glycoprotein composition		OGER	Site	HDL glycoprotein	Q9UNE0	position,	Our results demonstrate that HDL glycoprotein composition, including the site-specific glycosylation, differentiate between clinical groups, correlate with HDL's immunomodulatory capacity, and may be predictive of HDL's ability to protect from infection.
28287093	8	67	part_of	HDL	1497:1499	arg1	HDL glycoprotein composition	HDL glycoprotein		HDL glycoprotein composition		OGER	Site	HDL glycoprotein	Q9UNE0	position,	Our results demonstrate that HDL glycoprotein composition, including the site-specific glycosylation, differentiate between clinical groups, correlate with HDL's immunomodulatory capacity, and may be predictive of HDL's ability to protect from infection.
26687036	4	16	gly	glycosylated	540:551	arg1	glycosylated proteins	glycosylated proteins				Fterm		proteins			Despite their prevalence, the complete inventory and biological significance of glycosylated proteins in Toxoplasma remain unknown.
24783808	9	57	gly	glycoprotein	1082:1093	arg1	the total glycoprotein kit	the total glycoprotein kit				Fterm		glycoprotein			N-linked mannose and N-linked sialic acids were detected with the total glycoprotein kit.
26423601	2	69	gly	ECM	313:315	arg1	The proteoglycan composition	ECM			The proteoglycan composition	OGER		ECM	Q13201		The proteoglycan composition of the leiomyoma ECM is thought to affect pathophysiology of the disease.
28549117	6	35	gly	lectin	1120:1125	arg1	GalNAcβ1,4GlcNAc	lectin			GalNAcβ1,4GlcNAc	Fterm		lectin			Moreover, the engineered WFA with an amino acid substitution in Cys-272 yielded a recombinant monomeric lectin with limited binding specificity but wild-type affinity for GalNAc-terminated glycans, specifically GalNAcβ1,4GlcNAc.
26413620	3	22	part_of	FAM-labeled	575:585	arg1	fluorescein FAM-labeled DNA sequence	FAM		fluorescein FAM-labeled DNA sequence		OGER	Site	FAM	Q93008	sequence	The in vitro cells uptakes of this functionalized GO were investigated and the results showed that GO-LCO+ can deliver fluorescein FAM-labeled DNA sequence (FAM-DNA) into human hepatic carcinoma cells (QGY-7703) with higher efficiency than positively charged chitosan oligosaccharide (CO) functionalized graphene oxides (GO-CO+) without Lactose acid modification.
26957414	3	108	gly	glycoproteins	369:381	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			Hence, qualitative and quantitative analyses of glycoproteins are necessary to understand physiological processes.
27287318	0	33	part_of	Endolysin	39:47	arg1	DUF3380 Domain	Endolysin		DUF3380 Domain		Fterm		Endolysin			DUF3380 Domain from a Salmonella Phage Endolysin Shows Potent N-Acetylmuramidase Activity.
26454048	10	57	part_of	HAP/CS/HA	1634:1642	arg1	HAP/CS/HA composite	HAP		HAP/CS/HA composite		OGER	Site	HAP	Q15424	composite	The said findings demonstrated that the collagenase inclusion in HAP/CS/HA composite is a feasible approach for the alveolar bone regeneration and the same design can also be applied to other defective tissues.
26207761	4	4	gly	attached	814:821	arg2	the C-3 and C-28 positions AND sugar-substituted moieties			the C-3 and C-28 positions	sugar-substituted moieties					positions	Furthermore, for 3,28-O-bidesmosides, sugar-substituted moieties attached to the C-3 and C-28 positions of the oleanolic acid scaffold are helpful to increase the inhibitory activities against α-amylase and α-glucosidase.
24710601	10	31	part_of	hexokinase	1943:1952	arg1	whole body and muscle composition	kinase		whole body and muscle composition		Fterm	Site	kinase		position,	Equal values were found for viscerosomatic index and condition factor, whole body and muscle composition, plasma high-density and low-density lipoprotein cholesterol concentrations, and activities of lipase and hexokinase and glucose-6-phosphatase in liver.
24710601	10	90	part_of	lipase	1932:1937	arg1	whole body and muscle composition	lipase		whole body and muscle composition		Fterm	Site	lipase		position,	Equal values were found for viscerosomatic index and condition factor, whole body and muscle composition, plasma high-density and low-density lipoprotein cholesterol concentrations, and activities of lipase and hexokinase and glucose-6-phosphatase in liver.
26296369	5	67	part_of	CD69	1094:1097	arg1	the glycosylation site	CD69		the glycosylation site		OGER	Site	CD69	Q07108	site	In agreement, the glycomics analysis determines the glycosylation site and the N-glycan composition of CD69, and terminal removal of sialic acid from that N-linked glycans reverses the generation of forkhead box P3-positive Treg cells (23.21%; P < 0.05).
26957414	9	64	gly	glycoproteins	1166:1178	arg1	α1-acid glycoprotein	α1-acid glycoprotein				Fterm		glycoprotein			ISF was employed to study the glycosylation sites of three model glycoproteins, including fetuin, α1-acid glycoprotein and porcine thyroglobulin.
26957414	9	64	gly	glycoproteins	1166:1178	arg1	porcine thyroglobulin	porcine thyroglobulin				OGER		thyroglobulin	P01266		ISF was employed to study the glycosylation sites of three model glycoproteins, including fetuin, α1-acid glycoprotein and porcine thyroglobulin.
26957414	9	64	gly	glycoproteins	1166:1178	arg1	three model glycoproteins	three model glycoproteins				Fterm		glycoproteins			ISF was employed to study the glycosylation sites of three model glycoproteins, including fetuin, α1-acid glycoprotein and porcine thyroglobulin.
26957414	9	64	gly	glycoproteins	1166:1178	arg1	fetuin	fetuin				Fterm		fetuin			ISF was employed to study the glycosylation sites of three model glycoproteins, including fetuin, α1-acid glycoprotein and porcine thyroglobulin.
26957414	9	75	gly	glycoprotein	1207:1218	arg1	α1-acid glycoprotein	α1-acid glycoprotein				Fterm		glycoprotein			ISF was employed to study the glycosylation sites of three model glycoproteins, including fetuin, α1-acid glycoprotein and porcine thyroglobulin.
26957414	9	112	gly	glycosylation	1131:1143	arg2	the glycosylation sites	glycoprotein		sites		Fterm		glycoprotein		sites	ISF was employed to study the glycosylation sites of three model glycoproteins, including fetuin, α1-acid glycoprotein and porcine thyroglobulin.
26957414	9	112	gly	glycosylation	1131:1143	arg2	the glycosylation sites	glycoproteins		sites		Fterm		glycoproteins		sites	ISF was employed to study the glycosylation sites of three model glycoproteins, including fetuin, α1-acid glycoprotein and porcine thyroglobulin.
26957414	9	112	gly	glycosylation	1131:1143	arg1	fetuin	fetuin		sites		Fterm		fetuin		sites	ISF was employed to study the glycosylation sites of three model glycoproteins, including fetuin, α1-acid glycoprotein and porcine thyroglobulin.
26957414	9	112	gly	glycosylation	1131:1143	arg1	porcine thyroglobulin	thyroglobulin		sites		OGER		thyroglobulin	P01266	sites	ISF was employed to study the glycosylation sites of three model glycoproteins, including fetuin, α1-acid glycoprotein and porcine thyroglobulin.
25817687	6	53	gly	SGP-2	1230:1234	arg1	polysaccharides	SGP-2			polysaccharides	PUBTATOR		SGP-2	P10909		These findings strongly suggested polysaccharides were also the anti-inflammatory active ingredient for S. glabra, and the potential of SGP-1 and SGP-2 as the anti-inflammatory agents.
25817687	6	63	gly	SGP-1	1220:1224	arg1	polysaccharides	SGP-1			polysaccharides	PUBTATOR		SGP-1	109941		These findings strongly suggested polysaccharides were also the anti-inflammatory active ingredient for S. glabra, and the potential of SGP-1 and SGP-2 as the anti-inflammatory agents.
28747495	1	24	part_of	gp120	206:210	arg1	the C terminus	gp120		the C terminus		PUBTATOR	Site	gp120	3700	terminus	A highly conserved threonine near the C terminus of gp120 of human immunodeficiency virus (HIV) and simian immunodeficiency virus (SIV) was investigated for its contributions to envelope protein function and virion infectivity.
26002334	1	6	gly	used	299:302	arg2	β-CD/ATP composite			β-CD/ATP composite						composite	A novel sorbent (β-CD/ATP composite) for dispersive solid-phase extraction (d-SPE) prepared by bonding β-cyclodextrin to modified attapulgite via silane coupling was used to determine the concentrations of four (fluoro)quinolones (Qs) in honey samples.
27770946	3	20	gly	glycosaminoglycans	525:542	arg1	composition			composition						position	Biomaterial characterization focusing on morpho-functional traits, swelling behavior, fluid uptake performances, glycosaminoglycans content and composition and microbiological quality assessment was carried out to investigate the collagenic skeleton properties.
25453286	2	5	part_of	CCS/BT	274:279	arg1	CCS/BT composite	CCS		CCS/BT composite		OGER	Site	CCS	O14618	composite	CCS/BT composite was characterized by using Fourier transform infrared spectroscopy (FTIR), scanning electron microscopy (SEM), X-ray diffraction (XRD) and thermal gravimetric analyses (TGA).
26104904	4	9	gly	used	496:499	arg2	The synthesized composite			The synthesized composite						composite	The synthesized composite was used for degradation of 2,4-dichlorophenol (2,4-DCP) contamination in groundwater.
29326706	2	31	gly	TLR2	265:268	arg1	N-glycans	TLR2			N-glycans	PUBTATOR		TLR2	7097		The plant lectin ArtinM, for example, interacts with N-glycans of TLR2, whereas other lectins of microbial origin interact with TLR2 and TLR4.
26400336	0	19	part_of	protein	19:25	arg1	old fracture fragments	Bone morphogenetic protein 2		old fracture fragments		PUBTATOR	Site	Bone morphogenetic protein 2	650	fragments	Bone morphogenetic protein 2 and decorin expression in old fracture fragments and surrounding tissues.
26014750	5	28	part_of	gelatin	902:908	arg1	gelatin composition	gelatin		gelatin composition		Fterm	Site	gelatin		position	Both heparin and gelatin were covalently incorporated into PVA at an equal ratio resulting in a final PVA:heparin:gelatin composition of 19:0.5:0.5.
24952326	4	28	part_of	insulin-like	645:656	arg1	two insulin-like peptides	insulin		two insulin-like peptides		OGER	Site	insulin	P01308	peptides	Honey bees have two insulin-like peptides (Ilps) with differing spatial expression patterns in the fat body suggesting that AmIlp1 potentially functions in lipid metabolism while AmIlp2 is a more general indicator of nutritional status.
26746104	1	90	gly	glycosylated	259:270	arg1	proteins	proteins				Fterm		proteins			BACKGROUND Numerous proteins depend on correct glycosylation for their proper function and nearly all membrane, as well as secreted, proteins are glycosylated.
29169988	9	7	part_of	VG1F-SHAP-HA	1270:1281	arg1	VG1F-SHAP-HA complex deposition	SHAP		VG1F-SHAP-HA complex deposition		PUBTATOR	Site	SHAP	Q9ULL8	position	The addition of recombinant VG1 in fibroblast cultures enhanced VG1F-SHAP-HA complex deposition in the pericellular extracellular matrix.
28287093	1	19	gly	glycoprotein	229:240	arg1	HDL glycoprotein composition	HDL glycoprotein composition				OGER		HDL glycoprotein	Q9UNE0		The goal of this pilot study was to determine whether HDL glycoprotein composition affects HDL's immunomodulatory function.
26746104	10	94	gly	released	1823:1830	arg2	membrane proteins AND N-glycans	membrane proteins			N-glycans	Fterm		proteins			GENERAL SIGNIFICANCE The simple method was successfully optimised to generate reliable HILIC-UPLC profiles of N-glycans released from membrane proteins.
29267210	1	52	gly	isolated	172:179	arg1	milled wood lignin AND The lignin-carbohydrate complex	milled wood lignin			The lignin-carbohydrate complex	Fterm		lignin			The lignin-carbohydrate complex (LCC) was isolated from milled wood lignin of 2- and 24-month-old crude bamboo (Neosinocalamus affinis) culms using acetic acid (AcOH) and then characterized.
26957414	6	31	gly	glycosylation	789:801	arg2	glycosylation sites			glycosylation sites						sites	In ISF method, the identification of glycosylation sites depended on the detection of Y1 ion (ion of peptide backbone with an N-acetylglucosamine attached).
28507244	10	38	gly	glycopeptide	2389:2400	arg2	glycopeptide antibiotics			glycopeptide antibiotics						glycopeptide	Our work highlights the use of quantitative peptidoglycan composition analysis by LC-MS to provide insights into the mode of action of glycopeptide antibiotics.
25666613	7	4	part_of	phosphatase	1158:1168	arg1	These Tyr residues	CpsB phosphatase		These Tyr residues		OGER	AminoAcid	CpsB phosphatase	P09668	Tyr residues	These Tyr residues are also the target of the cognate CpsB phosphatase.
26746104	3	62	gly	attached	469:476	arg2	membrane proteins AND N-glycans	membrane proteins			N-glycans	Fterm		proteins			The composition of N-glycans attached to membrane proteins has not been sufficiently studied due to the lack of efficient and reproducible analytical methods.
28539265	5	18	part_of	COS-g-MAH/PVA/silk	978:995	arg1	the prepared COS-g-MAH/PVA/silk fibroin composite	PVA		the prepared COS-g-MAH/PVA/silk fibroin composite		OGER	Site	PVA	P32926	composite	The XRD results elucidate the changes in the crystalline behaviour of the prepared COS-g-MAH/PVA/silk fibroin composite.
28539265	5	69	part_of	fibroin	997:1003	arg1	the prepared COS-g-MAH/PVA/silk fibroin composite	fibroin		the prepared COS-g-MAH/PVA/silk fibroin composite		Fterm	Site	fibroin		composite	The XRD results elucidate the changes in the crystalline behaviour of the prepared COS-g-MAH/PVA/silk fibroin composite.
27865958	4	27	part_of	CS-PEG-HA	703:711	arg1	previously reported CS-PEG-HA composite	PEG		previously reported CS-PEG-HA composite		OGER	Site	PEG	P09466	composite	Enhanced water absorption capacity and mechanical strengths were obtained compared to previously reported CS-PEG-HA composite after addition of 0.1-0.3wt% of ZrO2 NPs into these nanocomposites.
24783808	11	4	gly	glycoproteins	1307:1319	arg1	other glycoproteins	other glycoproteins				Fterm		glycoproteins			Ginger reduced the expression of O-linked sialic acid and also N-linked mannose on Raji cells but had no effect on other glycoproteins.
26957414	0	93	part_of	proteins	103:110	arg1	the glycosylation sites	proteins		the glycosylation sites		Fterm	Site	proteins		sites	Parallel data acquisition of in-source fragmented glycopeptides to sequence the glycosylation sites of proteins.
28832260	0	79	part_of	chitosan/gelatin/keratin	15:38	arg1	chitosan/gelatin/keratin composite	gelatin		chitosan/gelatin/keratin composite		Fterm	Site	gelatin		composite	Development of chitosan/gelatin/keratin composite containing hydrocortisone sodium succinate as a buccal mucoadhesive patch to treat desquamative gingivitis.
26340627	0	54	part_of	NIR	65:67	arg1	Chitosan-Coated Near-Infrared (NIR) Layered Double Hydroxide-Indocyanine Green Nanocomposites	NIR		Chitosan-Coated Near-Infrared (NIR) Layered Double Hydroxide-Indocyanine Green Nanocomposites		OGER	Site	NIR	Q9Y3T9	Nanocomposites	Synthesis and Characterization of Chitosan-Coated Near-Infrared (NIR) Layered Double Hydroxide-Indocyanine Green Nanocomposites for Potential Applications in Photodynamic Therapy.
29169988	3	27	part_of	Versican	436:443	arg1	Versican G1-domain fragment	Versican G1-domain		Versican G1-domain fragment		Cterm	Site	Versican G1-domain		fragment	Versican G1-domain fragment (VG1F) is generated by proteolysis and is present in either remodeling tissues or the mature dermis.
29169988	3	79	part_of	G1-domain	445:453	arg1	Versican G1-domain fragment	Versican G1-domain		Versican G1-domain fragment		Cterm	Site	Versican G1-domain		fragment	Versican G1-domain fragment (VG1F) is generated by proteolysis and is present in either remodeling tissues or the mature dermis.
28574385	6	71	gly	glycoprotein	1253:1264	arg1	glycoprotein	glycoprotein				Fterm		glycoprotein			It was revealed that all patients have an increased content of glycosaminoglycans and glycoprotein in the blood, which corresponds to the general age-related rearrangement of connective tissue metabolism, but the patients of the main group have more expressed indictors, which corresponds to more severe dystrophic changes and the severity of clinical symptoms.
28832260	5	67	part_of	gelatin	953:959	arg1	the optimum composite	gelatin		the optimum composite		Fterm	Site	gelatin		composite	Then, keratin was added at different percentages to the optimum composite of chitosan and gelatin together with the drug.
27695962	7	60	gly	glycopeptides	1113:1125	arg2	intact glycopeptides			intact glycopeptides						glycopeptides	IsoTaG is therefore an effective platform for identification of intact glycopeptides labeled by alkynyl or azido sugars and will facilitate further studies of the glycoproteome.
26102015	1	20	gly	glycoprotein	280:291	arg1	GP	GP				Cterm		(GP) IIb			The results of randomized trials and observational studies make a strong argument for the use of bivalirudin rather than heparin plus systematic glycoprotein (GP) IIb/IIIa inhibitors for the great majority of patients undergoing percutaneous coronary interventions (PCI).
26102015	1	20	gly	glycoprotein	280:291	arg1	systematic glycoprotein	systematic glycoprotein				Fterm		glycoprotein			The results of randomized trials and observational studies make a strong argument for the use of bivalirudin rather than heparin plus systematic glycoprotein (GP) IIb/IIIa inhibitors for the great majority of patients undergoing percutaneous coronary interventions (PCI).
26820350	4	1	part_of	CCS/BT	637:642	arg1	CCS/BT composite	CCS		CCS/BT composite		OGER	Site	CCS	O14618	composite	The equilibrium data of CCS and CCS/BT composite agreed well with the Langmuir model.
26957414	13	100	gly	glycopeptides	1644:1656	arg2	glycopeptides			glycopeptides						glycopeptides	With ISF facilitating the peptide backbone sequencing of glycopeptides, identified peptide sequence coverage was increased.
26296369	5	67	gly	CD69	1094:1097	arg1	the N-glycan composition	CD69			the N-glycan composition	OGER		CD69	Q07108		In agreement, the glycomics analysis determines the glycosylation site and the N-glycan composition of CD69, and terminal removal of sialic acid from that N-linked glycans reverses the generation of forkhead box P3-positive Treg cells (23.21%; P < 0.05).
26296369	5	84	gly	glycosylation	1043:1055	arg1	CD69	CD69		site		OGER		CD69	Q07108	site	In agreement, the glycomics analysis determines the glycosylation site and the N-glycan composition of CD69, and terminal removal of sialic acid from that N-linked glycans reverses the generation of forkhead box P3-positive Treg cells (23.21%; P < 0.05).
26957414	15	21	gly	glycopeptide	1917:1928	arg2	glycopeptide sequencing			glycopeptide sequencing						glycopeptide	The formation of Y1 ions and oxonium ions in ISF facilitates glycopeptide sequencing and glycan composition identification.
26840728	6	6	part_of	PC-lipid	1088:1095	arg1	the PC-lipid tails	PC		the PC-lipid tails		PUBTATOR	Site	PC	5091	tails	A larger fraction of the total membrane cholesterol appears in the more accessible population when the acyl chains of the PC-lipid tails are more unsaturated.
25381909	4	60	gly	glycoproteins	681:693	arg1	intact undenatured glycoproteins	intact undenatured glycoproteins				Fterm		glycoproteins			Recently, we have reported the in vitro utility of jack bean α-1,2/3/6-mannosidase to remove O-linked mannose from intact undenatured glycoproteins produced in glycoengineered P. pastoris.
26766869	2	19	gly	used	367:370	arg2	Gold (Au)/N-trimethyl chitosan (TMC)/iron oxide (Fe3O4) (shell/shell/core) nanocomposite			Gold (Au)/N-trimethyl chitosan (TMC)/iron oxide (Fe3O4) (shell/shell/core) nanocomposite						nanocomposite	Gold (Au)/N-trimethyl chitosan (TMC)/iron oxide (Fe3O4) (shell/shell/core) nanocomposite was used as a tracing tag to label antibody.
26046262	3	26	part_of	CaP-CS	454:459	arg1	a novel CaP-CS composite	CaP		a novel CaP-CS composite		OGER	Site	CaP		composite	In the present study, some key features of CaP-CS were significantly improved by developing a novel CaP-CS composite.
26002334	7	61	part_of	β-CD/ATP	1486:1493	arg1	β-CD/ATP composite	-CD		β-CD/ATP composite		PUBTATOR	Site	-CD	65057	composite	The method was validated with three real honey samples, and the results demonstrated that β-CD/ATP composite possessed a high adsorption capacity for Qs.
29270873	4	53	part_of	rpsA	1450:1453	arg1	variable regions	rpsA		variable regions		OGER	Site	rpsA	P38983	regions	Due to the taxonomic affinity of the examined strain to both species A. succiniciruminis and A. glycerinitolerans, its taxonomic status towards these species was evaluated using variable regions of rpsA (length of 519 bp) and rplB (597 bp) gene sequences amplified based on specific primers designed so as to be applicable in differentiation, classification, and phylogeny of Actinomyces species/strains.
29270873	4	53	part_of	rpsA	1450:1453	arg1	rplB (597 bp) gene sequences	rpsA		rplB (597 bp) gene sequences		OGER	Site	rpsA	P38983	sequences	Due to the taxonomic affinity of the examined strain to both species A. succiniciruminis and A. glycerinitolerans, its taxonomic status towards these species was evaluated using variable regions of rpsA (length of 519 bp) and rplB (597 bp) gene sequences amplified based on specific primers designed so as to be applicable in differentiation, classification, and phylogeny of Actinomyces species/strains.
27795394	3	21	gly	glycoforms	593:602	arg1	LPS				LPS						Although mechanisms to recycle and degrade OM phospholipid material exist, there is no known mechanism by which to remove unfavorable lipopolysaccharide (LPS) glycoforms, except slow dilution through cell growth.
27795394	3	21	gly	glycoforms	593:602	arg1	lipopolysaccharide				lipopolysaccharide						Although mechanisms to recycle and degrade OM phospholipid material exist, there is no known mechanism by which to remove unfavorable lipopolysaccharide (LPS) glycoforms, except slow dilution through cell growth.
26400336	4	65	part_of	BMP-2	467:471	arg1	tissue composition	BMP-2		tissue composition		PUBTATOR	Site	BMP-2	650	position	In this study, tissue composition and expression of BMP-2 and DCN were detected in different parts of old fracture zones to explore inherent anti-fibrotic ability and osteogenesis.
26400336	4	67	part_of	DCN	477:479	arg1	tissue composition	DCN		tissue composition		PUBTATOR	Site	DCN	1634	position	In this study, tissue composition and expression of BMP-2 and DCN were detected in different parts of old fracture zones to explore inherent anti-fibrotic ability and osteogenesis.
27695962	5	64	part_of	glycoproteins	905:917	arg1	699 intact glycopeptides	glycoproteins		699 intact glycopeptides		Fterm	Site	glycoproteins		glycopeptides	Using an Orbitrap Fusion Tribrid mass spectrometer, we identified 699 intact glycopeptides from 192 glycoproteins.
26598045	7	48	part_of	protein	1033:1039	arg1	The amino acid composition	protein		The amino acid composition		Fterm	Site	protein		position	The amino acid composition of the protein contains all essential amino acids, with a protein score of 47.
27014229	2	66	gly	mannosylated	181:192	arg1	Highly mannosylated fungal cell wall proteins	Highly mannosylated fungal cell wall proteins				Fterm		proteins			Highly mannosylated fungal cell wall proteins are initial contact points with host immune systems.
26957414	4	79	gly	glycopeptide	493:504	arg2	the low glycopeptide signal intensities			the low glycopeptide signal intensities						glycopeptide	LC-MS/MS analysis of glycopeptides is faced with the low glycopeptide signal intensities and low peptide sequence identification.
26957414	4	87	gly	glycopeptides	457:469	arg2	glycopeptides			glycopeptides						glycopeptides	LC-MS/MS analysis of glycopeptides is faced with the low glycopeptide signal intensities and low peptide sequence identification.
25445196	3	5	part_of	ECM	683:685	arg1	molecular composition	ECM		molecular composition		OGER	Site	ECM	Q13201	position	Previous studies in our laboratory demonstrated on rats that the heterogeneous distribution and molecular composition of ECM is associated with the variable cytoarchitecture and hodological organization of the vestibular nuclei and may also be related to their specific functions in gaze and posture control as well as in the compensatory mechanisms following vestibular lesion.
26343574	2	35	gly	glycoprotein	431:442	arg1	glycoprotein	glycoprotein				Fterm		glycoprotein			Cellulase, glucohydrolase and an enzyme mix composed of cellulase, glucohydrolase and xylanase were selected based on the microalgae cell wall composition (cellulose, hemicellulose, pectin and glycoprotein).
28507244	1	32	gly	lipoglycopeptide	174:189	arg2	lipoglycopeptide			lipoglycopeptide						lipoglycopeptide	Oritavancin is a lipoglycopeptide antibiotic that exhibits potent activities against vancomycin-resistant Gram-positive pathogens.
26908829	3	61	part_of	HDL	317:319	arg1	composition	HDL		composition		OGER	Site	HDL	Q9UNE0	position	Whether apoB precipitation affects HDL subspecies composition and function has not been thoroughly investigated.
25381909	8	58	gly	glycoproteins	1487:1499	arg1	intact glycoproteins	intact glycoproteins				Fterm		glycoproteins			To this end, we screened a panel of recombinant lysosomal mannosidases from different organisms and identified several which cannot only reduce extended O-linked mannose chains but which can also hydrolyze the Man-α-O-Ser/Thr glycosidic bond on intact glycoproteins.
25381909	8	77	gly	bond	1472:1475	arg1	intact glycoproteins	glycoproteins			bond	Fterm		glycoproteins			To this end, we screened a panel of recombinant lysosomal mannosidases from different organisms and identified several which cannot only reduce extended O-linked mannose chains but which can also hydrolyze the Man-α-O-Ser/Thr glycosidic bond on intact glycoproteins.
27185131	1	34	part_of	TSA	219:221	arg1	TiO2/Sodium alginate (TSA) nanocomposite	TSA		TiO2/Sodium alginate (TSA) nanocomposite		OGER	Site	TSA	P32119	nanocomposite	Photocatalytic paper sheets were prepared by addition of different ratios of TiO2/Sodium alginate (TSA) nanocomposite.
26348386	5	23	part_of	PPy/CS	629:634	arg1	a PPy/CS composition	CS		a PPy/CS composition		PUBTATOR	Site	CS	1431	position	Biopolymer dopants-hyaluronic acid (HA) and chondroitin sulfate (CS)-were compared, and a PPy/CS composition was analyzed further.
26320017	4	43	part_of	fragments	949:957	arg1	sequence	fragments		sequence		Fterm	Site	fragments		sequence	Fractions of the reactor effluent were collected in a time-resolved fashion and characterized by various NMR techniques to determine the degree and sequence of fragments released, as well as, the chemical composition, molecular structure, and relative molecular weight of those released fragments.
24799212	2	18	part_of	Fish	389:392	arg1	Fish proximate composition	Fish		Fish proximate composition		OGER	Site	Fish	Q5TCZ1	position,	Fish proximate composition, pH value, total volatile basic nitrogen (TVB-N), thiobarbituric acid (TBA), K-value, TCA-soluble peptides, colour, texture profile analyses (TPA), microbiological properties and sensory quality were measured.
27795394	5	11	part_of	OM	876:877	arg1	OM composition	OM		OM composition		Cterm	Site	OM		position	We examined the native kinetics of OM composition during physiologically relevant environmental changes in Salmonella enterica, a well-characterized model system for activation of PhoP/Q and PmrA/B two-component systems (TCSs).
28987883	8	65	gly	asialoglycoprotein	1269:1286	arg1	the asialoglycoprotein receptor	the asialoglycoprotein receptor				PUBTATOR		asialoglycoprotein receptor	432		Bioconjugation of N-acetylgalactosamine (GalNAc), a ligand to the asialoglycoprotein receptor (ASGPR) overexpressed on hepatocytes, was validated by XPS analysis and cell uptake by receptor-mediated mechanism.
24419797	7	85	gly	glycosylation	1164:1176	arg1	the P. pastoris expressed enzyme	the P. pastoris expressed enzyme				Fterm		enzyme			Surprisingly, the biggest increment in thermal stability was achieved by producing the wild-type RGI lyase in Bacillus subtilis as opposed to in Pichia pastoris; this effect is suggested to be a negative result of glycosylation of the P. pastoris expressed enzyme.
24928668	2	55	part_of	rhBMP-2	340:346	arg1	the rhBMP-2 loaded β-TCP microsphere-hyaluronic acid-based powder-like hydrogel composite	rhBMP-2		the rhBMP-2 loaded β-TCP microsphere-hyaluronic acid-based powder-like hydrogel composite		OGER	Site	rhBMP-2	P12643	composite	The present study was conducted to evaluate if the rhBMP-2 loaded β-TCP microsphere-hyaluronic acid-based powder-like hydrogel composite (powder gel) can act as an effective rhBMP-2 carrier for implantation in host bone with a bone defect or poor bone quality.
24928668	2	81	part_of	rhBMP-2	463:469	arg1	the rhBMP-2 loaded β-TCP microsphere-hyaluronic acid-based powder-like hydrogel composite	rhBMP-2		the rhBMP-2 loaded β-TCP microsphere-hyaluronic acid-based powder-like hydrogel composite		OGER	Site	rhBMP-2	P12643	composite	The present study was conducted to evaluate if the rhBMP-2 loaded β-TCP microsphere-hyaluronic acid-based powder-like hydrogel composite (powder gel) can act as an effective rhBMP-2 carrier for implantation in host bone with a bone defect or poor bone quality.
27228950	1	48	gly	contained	219:227	arg1	identical chemical composition AND two monosaccharide probes			identical chemical composition	two monosaccharide probes					position	We prepared pasta of differing physical dimensions but identical chemical composition that contained two monosaccharide probes (lactulose and mannitol) that are absorbed passively and promptly excreted in urine.
25439942	3	32	part_of	BC/PAM	424:429	arg1	the BC/PAM composite	BC/PAM		the BC/PAM composite		PUBTATOR	Site	BC/PAM	5066	composite	Both the BC/PAM composite and pure BC were utilized to prepare the corresponding silver impregnated nanocomposites, i.e., BC/PAM-AgNPs and BC-AgNPs, by an environmental friendly method, UV irradiation.
26428179	7	55	part_of	n-HApCS	1032:1038	arg1	Fe3O4@n-HApCS composite	HApCS		Fe3O4@n-HApCS composite		OGER	Site	HApCS	P02743	composite	The results of this research work designated that Fe3O4@n-HApCS composite having the excellent defluoridation capacity than the individual components and interesting to note that the easy magnetic separation of Fe3O4@n-HApCS composite from aqueous medium.
25762620	8	41	gly	structures	1079:1088	arg1	Mucin (MUC) 1	MUC) 1			structures	OGER		MUC) 1	P15941		Furthermore, C1GALT1 modulates O-glycan structures on Mucin (MUC) 1 and promotes MUC1-C/β-catenin signaling in breast cancer cells.
26598045	6	52	gly	protein	923:929	arg1	sugar	protein			sugar	Fterm		protein			The sclerotium was found to be rich in carbohydrate, protein, and dietary fibers with small amounts of fat, calories, and sugar.
28527999	8	10	part_of	OGP	1150:1152	arg1	OGP peptides	OGP		OGP peptides		OGER	Site	OGP	Q12889	peptides	These promising results suggest that the (BC-COL)-Ap associated with OGP peptides might be considered a potential candidate for bone tissue engineering applications.
28396675	2	77	gly	carry	341:345	arg1	these proteins AND N-glycans	these proteins			N-glycans	Fterm		proteins			However these proteins carry N-glycans with plant-typical residues [β(1,2)-xylose and core α(1,3)-fucose], which can greatly impact the immunogenicity, allergenicity, or activity of the protein.
24619574	1	21	part_of	-heparin	205:212	arg1	hydroxyapatite (HA)-heparin composites	(HA)-heparin		hydroxyapatite (HA)-heparin composites		Cterm	Site	(HA)-heparin		composites	In this paper we describe the one-pot fabrication of hydroxyapatite (HA)-heparin composites by electrodeposition onto Ti substrates and their characterisation in terms of structure, morphology, heparin content and bioactivity.
25007822	1	10	gly	used	171:174	arg2	Alternating current (AC) electrophoretic deposition			Alternating current (AC) electrophoretic deposition						position	Alternating current (AC) electrophoretic deposition (EPD) was used to produce multifunctional composite coatings combining bioactive glass (BG) particles and chitosan.
25439942	6	52	part_of	BC/PAM-AgNPs	931:942	arg1	The BC/PAM-AgNPs nanocomposite	BC/PAM		The BC/PAM-AgNPs nanocomposite		PUBTATOR	Site	BC/PAM	5066	nanocomposite	The BC/PAM-AgNPs nanocomposite exhibited a bigger particle size and lower mass content of AgNPs than the BC-AgNPs one.
25439942	5	49	part_of	BC/PAM	831:836	arg1	the BC/PAM composite	BC/PAM		the BC/PAM composite		PUBTATOR	Site	BC/PAM	5066	composite	It was shown that the BC/PAM composite displayed a denser microstructure and higher thermal stabilities than pure BC.
24376168	7	63	gly	released	1290:1297	arg1	SSB AND sugars	SSB			sugars	OGER		SSB	P05455		Results from this study can be applied to large scale biorefineries using sugars released from SSB for producing various biofuels.
27271521	4	40	part_of	BmNPV	811:815	arg1	the composition	BmNPV		the composition		Cterm	Site	BmNPV		position	In particular, the composition of chitosan and BmNPV bacmid DNA nanocomplexes formed by an N/P ratio of 8 or 10, respectively, showed the highest specific activity of β3GnT2 in the silkworm larvae hemolymph.
28539265	2	2	part_of	COS-g-MAH/PVA/SF	619:634	arg1	COS-g-MAH/PVA/SF composite	COS-g-MAH/PVA		COS-g-MAH/PVA/SF composite		OGER	Site	COS-g-MAH/PVA	P32926	composite	Initially the chitosan oligosaccharide-graft-maleic anhydride copolymer has been prepared by utilizing ceric ammonium nitrate as an initiator and the optimised graft copolymer was then used for synthesizing COS-g-MAH/PVA/SF composite.
28986683	5	47	part_of	HAp-CTS	606:612	arg1	HAp-CTS composites	HAp		HAp-CTS composites		OGER	Site	HAp	Q15424	composites	Analysis confirmed the structure of HAp-CTS composites.
26002334	1	22	part_of	β-CD/ATP	150:157	arg1	β-CD/ATP composite	-CD		β-CD/ATP composite		PUBTATOR	Site	-CD	65057	composite	A novel sorbent (β-CD/ATP composite) for dispersive solid-phase extraction (d-SPE) prepared by bonding β-cyclodextrin to modified attapulgite via silane coupling was used to determine the concentrations of four (fluoro)quinolones (Qs) in honey samples.
27833472	10	9	gly	fucosylated	1311:1321	arg1	core fucosylated N-glycan				core fucosylated N-glycan						RESULTS Expression of core fucosylated N-glycan and tumor-associated Tn, T and sT antigens were increased in SP cells.
28986683	3	37	part_of	HAp-CTS	392:398	arg1	the composites	HAp		the composites		OGER	Site	HAp	Q15424	composites	In this study, the composites of HAp-CTS are produced in order to investigate their drug loading and release studies.
24783808	0	76	gly	glycoproteins	32:44	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			The effect of ginger extract on glycoproteins of Raji cells.
24363237	3	8	gly	used	795:798	arg2	Chemical composition			Chemical composition						position	Chemical composition and structural characteristics, such as crystallinity (determined by X-ray diffraction), functional groups (Fourier transform infrared spectroscopy), and microstructure (scanning electron microscopy), were used to correlate SCB pretreatments with enzymatic biosynthesis by a strain of the filamentous fungus Aspergillus niger under solid-state fermentation.
24764143	4	2	gly	mannosylated	519:530	arg1	mannosylated and fucosylated structures				mannosylated and fucosylated structures						In this study, we assessed CA-125 as a ligand for dendritic cell-specific ICAM-3-grabbing non-integrin (DC-SIGN), which is a C-type lectin showing specificity for mannosylated and fucosylated structures.
24764143	4	39	gly	fucosylated	536:546	arg1	mannosylated and fucosylated structures				mannosylated and fucosylated structures						In this study, we assessed CA-125 as a ligand for dendritic cell-specific ICAM-3-grabbing non-integrin (DC-SIGN), which is a C-type lectin showing specificity for mannosylated and fucosylated structures.
28926673	4	17	gly	glycoforms	755:764	arg1	fucosylated (G2F) glycoforms				fucosylated (G2F) glycoforms						In this study, the disruption of two α-2,3 sialyltransferases (ST3GAL4 and ST3GAL6) from Chinese Hamster Ovary (CHO) cells was combined with protein engineering of the Fc region to generate an IgG containing 80% bigalactosylated and fucosylated (G2F) glycoforms.
28926673	4	44	gly	fucosylated	737:747	arg1	fucosylated (G2F) glycoforms				fucosylated (G2F) glycoforms						In this study, the disruption of two α-2,3 sialyltransferases (ST3GAL4 and ST3GAL6) from Chinese Hamster Ovary (CHO) cells was combined with protein engineering of the Fc region to generate an IgG containing 80% bigalactosylated and fucosylated (G2F) glycoforms.
28926673	4	11	gly	containing	701:710	arg1	an IgG AND fucosylated (G2F) glycoforms	an IgG			fucosylated (G2F) glycoforms	Cterm		IgG			In this study, the disruption of two α-2,3 sialyltransferases (ST3GAL4 and ST3GAL6) from Chinese Hamster Ovary (CHO) cells was combined with protein engineering of the Fc region to generate an IgG containing 80% bigalactosylated and fucosylated (G2F) glycoforms.
27998147	5	76	part_of	CS-diatom	525:533	arg1	The composition	CS		The composition		PUBTATOR	Site	CS	170587	position	The composition of CS-diatom prepared was optimized by in vitro hemocompatibility and blood coagulation evaluation for that prepared with 0.5%, 1%, 3%, and 5% chitosan.
27711252	5	16	part_of	carboxypeptidase	865:880	arg1	a β-propeller domain	carboxypeptidase		a β-propeller domain		PUBTATOR	Site	carboxypeptidase	30998	domain	Computer modelling of the PG1058 structure predicted a novel N- to C-terminal architecture comprising a tetratricopeptide repeat (TPR) domain, a β-propeller domain, a carboxypeptidase regulatory domain-like fold (CRD) and an OmpA_C-like putative peptidoglycan binding domain.