doc_id sent_index relation_id relation trigger trigger_offset arg_num arg_base_np arg_protein arg_domain arg_site arg_sugar PSource SiteSource NProtein NID SiteName sent_text 24408531 13 20 part_of CMG1240 1451:1457 arg1 The 16S rRNA gene sequence CMG1240 The 16S rRNA gene sequence Cterm Site CMG1240 sequence The 16S rRNA gene sequence of strain CMG1240(T) shared highest similarity with that of Paenibacillus fonticola ZL(T) (97.6 %) while all other tested Paenibacillus strains showed lower sequence similarities (≤95.3 %). 29042274 1 38 part_of PS-PVA 170:175 arg1 plasticized starch-polyvinyl alcohol (PS-PVA) composite PVA plasticized starch-polyvinyl alcohol (PS-PVA) composite OGER Site PVA P32926 composite We prepared biodegradable nanocomposites from plasticized starch-polyvinyl alcohol (PS-PVA) composite incorporated with cellulose nanocrystals (CNC). 27773385 3 42 gly glycoprotein 556:567 arg1 glycoprotein glycoprotein Fterm glycoprotein One type of enzyme-mediated glycan attachment, fucosylation, can mediate glycoprotein and glycolipid cell surface expression, trafficking, secretion, and quality control to modulate a variety of inter- and intracellular signaling cascades. 25439914 0 44 part_of HA/PVA-SbQ 47:56 arg1 HA/PVA-SbQ composites PVA HA/PVA-SbQ composites OGER Site PVA P32926 composites Rheological and structural characterization of HA/PVA-SbQ composites film-forming solutions and resulting films as affected by UV irradiation time. 27305760 4 25 part_of CD-PG2 668:673 arg1 composition PG2 composition OGER Site PG2 P80370 position The chemical structure and composition of CD-PG2 was characterized by IH NMR. 28513656 2 3 part_of ECM-previously 383:396 arg1 composition ECM composition OGER Site ECM Q13201 position The decellularization process comprises a compromise between damaging and preserving the ultrastructure and composition of ECM-previously shown to affect cell survival, proliferation, migration, organization, differentiation and maturation. 25686999 11 8 part_of alginate/HNT 1434:1445 arg1 the alginate/HNT composite HNT the alginate/HNT composite OGER Site HNT Q99PJ0 composite The mouse fibroblast cells display better attachment to the alginate/HNT composite than those to the pure alginate, suggesting the good cytocompatibility of the composite scaffolds. 24438623 4 6 part_of CS+cells 688:695 arg1 The CS/osteo-induced BMSC composites CS The CS/osteo-induced BMSC composites PUBTATOR Site CS 170587 composites METHODS The CS/osteo-induced BMSC composites (CS+cells group) and the CS scaffolds (CS group) were, respectively, implanted into SD rat thigh muscles. 24438623 4 80 part_of CS/osteo-induced 654:669 arg1 The CS/osteo-induced BMSC composites CS The CS/osteo-induced BMSC composites PUBTATOR Site CS 170587 composites METHODS The CS/osteo-induced BMSC composites (CS+cells group) and the CS scaffolds (CS group) were, respectively, implanted into SD rat thigh muscles. 25081519 7 67 gly Pectin 1099:1104 arg1 acidic and neutral sugars Pectin acidic and neutral sugars Fterm Pectin Pectin composition (acidic and neutral sugars) and physicochemical properties (molar mass and intrinsic viscosity) were determined. 27773385 8 74 gly N-glycoproteins 1827:1841 arg1 N-glycoproteins N-glycoproteins Fterm N-glycoproteins Given that FUT8 is the only α-1,6-fucosyltransferase expressed in mammals, the concurrent decrease in AAL binding in schizophrenia, particularly evident for N-glycoproteins in the ~52-58kDa and ~60-70kDa molecular mass ranges, likely reflects a consequence of abnormal FUT8 expression in the disorder. 24438623 3 34 part_of CS/osteo-induced 490:505 arg1 CS/osteo-induced BMSC composites CS CS/osteo-induced BMSC composites PUBTATOR Site CS 170587 composites This study aimed to determine the osteogenic ability of CS/osteo-induced BMSC composites by observing the bone-forming process and explore the relationship between bone formation and scaffold biodegradation. 27287166 3 60 part_of β-CD-GQD 550:557 arg1 a new electrocatalytical nanocomposite -CD a new electrocatalytical nanocomposite PUBTATOR Site -CD 65057 nanocomposite β-CD-GQD modified GCE was used as a new electrocatalytical nanocomposite towards electrooxidation of Vitamin C (as sample analyte). 27325308 6 61 part_of ECM 1157:1159 arg1 the ECM composition ECM the ECM composition OGER Site ECM Q13201 position The influence of the ECM composition on cell activity and viability was measured using the XTT assay and a fluorescent dead or alive assay. 26194765 1 69 part_of immunoglobulin 244:257 arg1 the immunoglobulin variable regions immunoglobulin the immunoglobulin variable regions Fterm Site immunoglobulin regions The vast majority of cases of follicular lymphoma (FL), but not normal B cells, acquire N-glycosylation sites in the immunoglobulin variable regions during somatic hypermutation. 27001601 1 75 part_of contain 269:275 arg1 paulomycin A AND an isothiocyanate residue paulomycin A an isothiocyanate residue Cterm AminoAcid paulomycin A residue in BACKGROUND Streptomyces albus J1074 produces glycosylated antibiotics paulomycin A, B and E that derive from chorismate and contain an isothiocyanate residue in form of paulic acid. 29306809 7 59 part_of protein 1132:1138 arg1 protein composition protein protein composition Fterm Site protein position, For protein composition, single species model results had RPIQ values between 2.4 and 3.5 and RMSEP between 8.6 and 18%, the three oyster model had an RPIQ of 2.6 and an RMSEP of 10.8% and the five bivalve species had an RPIQ of 3.6 and RMSEP of 8.7% respectively. 24136552 3 0 gly glycosylated 665:676 arg1 constituent proteins constituent proteins Fterm proteins From the perspective of plant scientists, lectin enrichment has proven useful for studies of the proteomes of the secretory pathways and cell wall, due to the high proportion of constituent proteins that are glycosylated. 28204541 5 4 part_of pectin 953:958 arg1 specific pectin and xylan epitopes pectin specific pectin and xylan epitopes Fterm Site pectin epitopes Glycome profiling analysis showed that both overall cell wall polysaccharide extractability and relative extractability of specific pectin and xylan epitopes were affected in pgm, suggesting extensive structural changes in pgm cell walls. 28115093 9 50 part_of κ-Car-Cur 1513:1521 arg1 κ-Car-Cur composites Car κ-Car-Cur composites OGER Site Car P36575 composites The in vitro cellular applications studies of κ-Car-Cur demonstrated that, κ-Car-Cur composites induced higher cytotoxicity against selected cancer cells than free Cur and effectively involved to trigger cellular apoptosis in A549 cancer cells. 26586655 12 6 part_of PPL/β-TCP 1687:1695 arg1 PPL/β-TCP composite PPL PPL/β-TCP composite OGER Site PPL O60437 composite Collectively, our results suggest PPL/β-TCP composite may be useful for bone engineering. 24438623 10 37 part_of CS/osteo-induced 1873:1888 arg1 The CS/osteo-induced BMSC composites CS The CS/osteo-induced BMSC composites PUBTATOR Site CS 170587 composites CONCLUSION The CS/osteo-induced BMSC composites are excellent bone tissue engineering substitutes, and the scaffold biodegradation is accordant with the bone formation. 25501675 9 81 gly glycopeptides 1487:1499 arg2 additional glycopeptides additional glycopeptides glycopeptides In addition to those previously reported, additional glycopeptides were detected with moderate abundance. 26077122 7 54 part_of  1 1117:1118 arg1  1 complex compositions 2 : 1  1 complex compositions OGER Site 2 : 1 P35326 positions The calculated 1 : 1 stability constants for the peracetyl CD : ester complexes are also in this range, but 1 : 2 and 2 : 1 complex compositions are also possible. 24950216 5 24 part_of DENV 867:870 arg1 DENV E protein ectodomain DENV E protein DENV E protein ectodomain PUBTATOR Site DENV E protein 32430 ectodomain The characteristics of DENV E protein ectodomain in the absence of prM protein remains largely unknown. 24950216 5 26 part_of protein 874:880 arg1 DENV E protein ectodomain DENV E protein DENV E protein ectodomain PUBTATOR Site DENV E protein 32430 ectodomain The characteristics of DENV E protein ectodomain in the absence of prM protein remains largely unknown. 24950216 5 80 part_of E 872:872 arg1 DENV E protein ectodomain DENV E protein DENV E protein ectodomain PUBTATOR Site DENV E protein 32430 ectodomain The characteristics of DENV E protein ectodomain in the absence of prM protein remains largely unknown. 27936727 3 57 part_of heparin 650:656 arg1 increased deposition heparin increased deposition Fterm Site heparin position Modification of ECM with CBP-heparin leads to increased deposition of functional heparin (by ∼7.2-fold measured by glycosaminoglycan composition) and a corresponding reduction in platelet binding (>70%) and whole blood clotting (>80%) onto the ECM. 24978609 0 65 part_of sequence 93:100 arg1 putative structural cuticular proteins proteins sequence Fterm Site proteins sequence CutProtFam-Pred: detection and classification of putative structural cuticular proteins from sequence alone, based on profile hidden Markov models. 27526028 1 31 gly glycosylated 99:110 arg1 Dystroglycan receptor Dystroglycan Fterm receptor Dystroglycan is a highly glycosylated extracellular matrix receptor with essential functions in skeletal muscle and the nervous system. 25129734 1 33 gly position 141:148 arg1 glucose units position glucose units position The primary hydroxyl groups on C6 position in glucose units of cellulose with H3PO4/HNO3-NaNO2 mediated oxidation produced monocarboxy cellulose and binding sites, subsequent amide reaction with chitosan solution to obtain chitosan crosslinked cotton fabrics. 27163166 4 0 part_of PDEGA/CNC 527:535 arg1 the PDEGA/CNC bionanocomposite PDEGA/CNC the PDEGA/CNC bionanocomposite OGER Site PDEGA/CNC P32418 bionanocomposite Using the PDEGA/CNC bionanocomposite at a very low concentration of CNCs, a configurable lens having a robust, self-contained tunable optical structure was developed. 27287166 1 75 part_of β-CD 330:333 arg1 simultaneous electrodeposition -CD simultaneous electrodeposition PUBTATOR Site -CD 65057 position For the first time, β-Cyclodextrin (β-CD) attachment to graphene quantum dot (GQD) structure was performed using simultaneous electrodeposition of GQD and β-CD on the surface of glassy carbon electrode (GCE). 24428850 9 94 gly had 1170:1172 arg1 RESULTS Oyster protein AND no sugar RESULTS Oyster protein no sugar Fterm protein RESULTS Oyster protein had a minimum F-value (the mole ratio of branched-chain amino acids to aromatic amino acids) (2.68), contained 1.85 mmol/mL taurine and no sugar. 28120014 2 1 gly domain 330:335 arg1 a fibronectin III-like domain repeat a fibronectin III-like domain repeat It contains an N-terminal catalytic domain (family 6 of glycosyl hydrolases (GH6)), followed by a fibronectin III-like domain repeat (Fn31,2) and a C-terminal family 3b cellulose-binding domain (CBM3b). 27067267 3 39 part_of milk 528:531 arg1 milk composition milk milk composition PUBTATOR Site milk 100532204 position, Our objective was to determine the effects of prenatal consumption of prebiotic caprine milk oligosaccharides (CMO) on the large intestine of female mice, milk composition, and offspring's development. 23681169 9 14 part_of ECM 1598:1600 arg1 the ECM composition ECM the ECM composition OGER Site ECM Q13201 position We find that the heterogeneous distribution of ECM molecules is associated in many cases with the variable cytoarchitecture and hodological organization of the vestibular nuclei, and propose that differences in the ECM composition may be related to specific neuronal functions associated with gaze and posture control and vestibular compensation. 24444939 6 34 gly residue 763:769 arg1 every four xylose residues residue every four xylose residues residue The repeating unit of CTPB1 is composed of one non-reducing terminal residue of 4-O-methyl-D-glucuronic acid on every four xylose residues. 26453877 3 24 part_of GR/β-CD 692:698 arg1 GR/β-CD composite GR/β-CD GR/β-CD composite PUBTATOR Site GR/β-CD 65057 composite The GR/β-CD modified electrode exhibited a higher electrochemical response to DA with a lower oxidation potential (0.224V) than that of bare/β-CD (0.38V) and GR (0.525V) modified SPCEs, revealing an excellent electro-oxidation behavior of GR/β-CD composite toward DA. 24136552 1 31 gly glycoproteins 238:250 arg1 glycoproteins glycoproteins Fterm glycoproteins Lectins are proteins that bind to sugars with varying specificities and several have been identified that show differential binding to structurally variable glycans attached to glycoproteins. 24136552 1 34 gly attached 226:233 arg1 glycoproteins AND structurally variable glycans glycoproteins structurally variable glycans Fterm glycoproteins Lectins are proteins that bind to sugars with varying specificities and several have been identified that show differential binding to structurally variable glycans attached to glycoproteins. 25463790 0 25 gly composition 63:73 arg1 arabinoxylan-oligosaccharide mixtures position arabinoxylan-oligosaccharide mixtures position Production of arabinoxylan-oligosaccharide mixtures of varying composition from rye bran by a combination of process conditions and type of xylanase. 26586655 9 10 part_of PPL/β-TCP 1299:1307 arg1 PPL/β-TCP composite PPL PPL/β-TCP composite OGER Site PPL O60437 composite Implantation of PPL/β-TCP composite induced new bone formation at 4 weeks, which was remarkably evident at 8 weeks. 26047962 0 41 part_of HEC-PAA 30:36 arg1 a novel crosslinked HEC-PAA porous hydrogel composite HEC a novel crosslinked HEC-PAA porous hydrogel composite OGER Site HEC O14777 composite Design of a novel crosslinked HEC-PAA porous hydrogel composite for dissolution rate and solubility enhancement of efavirenz. 24742328 11 59 part_of found 1817:1821 arg1 the BT_1012 protein AND the two domains the BT_1012 protein the two domains PUBTATOR Site BT_1012 protein 1075607 domains Based on this we have renamed the Pfam families representing the two domains found in the BT_1012 protein, PF13204 and PF12904, as putative glycoside hydrolase and glycoside hydrolase-associated C-terminal domain respectively. 24742328 11 67 part_of hydrolase-associated 1914:1933 arg1 glycoside hydrolase-associated C-terminal domain hydrolase glycoside hydrolase-associated C-terminal domain Fterm Site hydrolase domain Based on this we have renamed the Pfam families representing the two domains found in the BT_1012 protein, PF13204 and PF12904, as putative glycoside hydrolase and glycoside hydrolase-associated C-terminal domain respectively. 24950216 10 11 part_of protein 1954:1960 arg1 E protein ectodomain E protein E protein ectodomain PUBTATOR Site E protein 32430 ectodomain CONCLUSIONS/SIGNIFICANCE Considering the enhancement of DENV infectivity by anti-prM antibodies, our findings provide new insights into the expression and secretion of E protein ectodomain in the absence of prM protein and contribute to future subunit vaccine design. 24950216 10 67 part_of E 1952:1952 arg1 E protein ectodomain E protein E protein ectodomain PUBTATOR Site E protein 32430 ectodomain CONCLUSIONS/SIGNIFICANCE Considering the enhancement of DENV infectivity by anti-prM antibodies, our findings provide new insights into the expression and secretion of E protein ectodomain in the absence of prM protein and contribute to future subunit vaccine design. 27067053 1 25 gly glycopeptides 122:134 arg2 plant intact glycopeptides plant intact glycopeptides glycopeptides This study presents the first large-scale analysis of plant intact glycopeptides. 26099260 1 45 gly glycopeptides 394:406 arg2 macrocyclic glycopeptides macrocyclic glycopeptides glycopeptides High-performance liquid chromatographic methods were developed for the separation of enantiomers of four unnatural paclitaxel precursor phenylisoserine analogs on chiral stationary phases containing macrocyclic glycopeptides and cyclofructans as chiral selectors. 28396578 9 50 part_of had 1781:1783 arg1 1% SDC AND composition 1% SDC composition OGER Site 1% SDC P18827 position Application of the scoring system to our experimental data showed that decellularization with 1% SDS at 4 °C provided the highest structural and composition scores, while 1% SDC at 4 °C had lower structural and composition but a significantly better cell performance score. 27773385 5 102 gly N-glycoprotein 1321:1334 arg1 α-1,6-fucosylated N-glycoprotein abundance α-1,6-fucosylated N-glycoprotein abundance Fterm N-glycoprotein We also used the fucose binding protein, Aleuria aurantia lectin (AAL), to assess α-1,6-fucosylated N-glycoprotein abundance in the same subjects. 24973518 4 3 part_of ECM 447:449 arg1 the ECM composition ECM the ECM composition OGER Site ECM Q13201 position, The fate of scarless or scar forming healing may already be defined by the ECM composition, prior to wounding. 25439914 2 28 part_of HA/PVA-SbQ 399:408 arg1 HA/PVA-SbQ composites PVA HA/PVA-SbQ composites OGER Site PVA P32926 composites The rheological properties and structural characterization of HA/PVA-SbQ composites in aqueous solution were investigated. 28189483 11 64 gly used 1489:1492 arg2 This composites This composites composites This composites can be used in this new field for stem cells differentiation to target tissues. 28609623 5 40 gly N-glycopeptides 1267:1281 arg2 N-glycopeptides N-glycopeptides N-glycopeptides The CS@PGMA@IDA-Ti4+ nanomaterials demonstrate an outstanding ability for N-glycopeptides and phosphopeptides enrichment simultaneously, evaluated by the extremely high binding capacity (150 mg g-1), sensitivity (above 0.1 fmol), and high enrichment recovery (above 75.4%). 26099260 0 17 gly glycopeptide 121:132 arg2 macrocyclic glycopeptide macrocyclic glycopeptide glycopeptide High-performance liquid chromatographic separation of paclitaxel intermediate phenylisoserine derivatives on macrocyclic glycopeptide and cyclofructan-based chiral stationary phases. 26961813 1 25 gly heteropolysaccharide 107:126 arg1 various positions various positions various positions Site positions, Chondroitin sulfate (CS) is a linear heteropolysaccharide of repeating disaccharide units bearing sulfate groups in various positions, commonly at C4 and/or C6 of galactosamine. 25251456 6 14 gly lignin 1194:1199 arg1 Ara substitution degree lignin Ara substitution degree Fterm lignin Notably, despite that the non-KOH-extractable residues covered 12%-23% hemicelluloses and lignin of total biomass, their wall polymer features exhibited the predominant effects on biomass enzymatic hydrolysis including Ara substitution degree of xylan (reverse Xyl/Ara) and S/G ratio of lignin. 24950479 2 0 part_of DNA 478:480 arg1 DNA fragments DNA DNA fragments Cterm Site DNA fragments Chimeric A. thaliana glycosyl hydrolase (GH) gene libraries were assembled using a novel directed evolution strategy (TADSir: template assisted DNA shuffling and in vitro recombination) that promotes DNA recombination by reassembly of DNA fragments on unique gene templates. 27343705 8 16 gly used 1443:1446 arg2 the BC-magnetite composites the BC-magnetite composites composites Our results proved that the BC-magnetite composites could be used for an efficient removal of chromium(VI) from diluted solutions with a minimum magnetite dissolution during operation. 25497797 1 41 part_of κ-CN 309:312 arg1 the hydrophilic C-terminal peptide -CN the hydrophilic C-terminal peptide PUBTATOR Site -CN 281728 peptide Chymosin-induced cleavage of κ-casein (κ-CN) occurs during the first enzymatic phase in milk coagulation during cheese manufacturing, where the hydrophilic C-terminal peptide of κ-CN, named caseino-macropeptide (CMP), is released into the whey. 28602197 6 29 gly utilized 968:975 arg2 The β-CDs-GQDs composites The β-CDs-GQDs composites composites The β-CDs-GQDs composites utilized nanosize of GQDs and enantioselectivity of β-CDs to realize chiral recognition of Tyr. 27287227 6 51 part_of VAR2CSA 1100:1106 arg1 a recombinant minimal CS-binding region VAR2CSA a recombinant minimal CS-binding region Cterm Site VAR2CSA 1431 region In this study, we have characterized the CS chain that interacts with a recombinant minimal CS-binding region of VAR2CSA (rVAR2) using a CS library of various defined lengths and sulfate compositions. 27287227 6 79 part_of CS-binding 1079:1088 arg1 a recombinant minimal CS-binding region CS a recombinant minimal CS-binding region PUBTATOR Site CS 1431 region In this study, we have characterized the CS chain that interacts with a recombinant minimal CS-binding region of VAR2CSA (rVAR2) using a CS library of various defined lengths and sulfate compositions. 26015261 6 25 gly afucosylated 1201:1212 arg1 uniform afucosylated complex type glycans uniform afucosylated complex type glycans The N-linked glycosylation pathway in Pichia pastoris has been engineered to produce human-like N-linked glycosylation with uniform afucosylated complex type glycans. 27067053 5 23 gly detected 808:815 arg1 a protein AND N-linked sugars a protein N-linked sugars Fterm protein While most of the modified proteins are secreted, membrane, endoplasmic reticulum (ER), or Golgi-localized proteins, surprisingly, N-linked sugars were detected on a protein predicted to be cytosolic or nuclear. 25518335 0 36 part_of lysostaphin-loaded 28:45 arg1 novel lysostaphin-loaded hydroxyapatite/chitosan composites lysostaphin novel lysostaphin-loaded hydroxyapatite/chitosan composites Fterm Site lysostaphin composites Controlled release by novel lysostaphin-loaded hydroxyapatite/chitosan composites. 27222215 12 54 part_of database 1634:1641 arg1 chemical composition database chemical composition Fterm Site database position In conclusion, a comprehensive database on chemical composition and SID of CP and AA in eight current barley genotypes has been made available. 27198846 1 72 gly composition 332:342 arg1 other consumed carbohydrates position other consumed carbohydrates position SCOPE We aimed to investigate the effects of three different soluble pectins on the digestion of other consumed carbohydrates, and the consequent alterations of microbiota composition and SCFA levels in the intestine of pigs. 26586655 4 5 part_of PPL 547:549 arg1 both PPL and PPL/β-TCP composites PPL both PPL and PPL/β-TCP composites OGER Site PPL O60437 composites First, an in vitro evaluation of the mechanical properties of PPL demonstrated both PPL and PPL/β-TCP composites have higher shear bond strength than materials in current clinical use, including polymethylmethacrylate (PMMA) cement and α-tricalcium phosphate (TCP) cement, Biopex-R. 26586655 4 58 part_of PPL/β-TCP 555:563 arg1 both PPL and PPL/β-TCP composites PPL both PPL and PPL/β-TCP composites OGER Site PPL O60437 composites First, an in vitro evaluation of the mechanical properties of PPL demonstrated both PPL and PPL/β-TCP composites have higher shear bond strength than materials in current clinical use, including polymethylmethacrylate (PMMA) cement and α-tricalcium phosphate (TCP) cement, Biopex-R. 24731343 6 49 part_of pectin 725:730 arg1 pectin composition pectin pectin composition Fterm Site pectin position Generally, the main changes in pectin composition associated with the loss of firmness during ripening in Jonagold apples were a loss of side chains neutral sugars, increased water solubility and decreased molar mass. 28916445 8 21 part_of proteins 1630:1637 arg1 the composition proteins the composition Fterm Site proteins position These steps demonstrated that two-dimensional electrophoresis-based proteomics can be used to clarify the composition of intracellular proteins from sheath-producing white-rot fungi. 25304326 3 22 part_of melanin 479:485 arg1 chemical composition melanin chemical composition Fterm Site melanin position The purity, chemical composition and structure of the prepared melanin were explored by UV-visible absorption spectroscopy, Fourier transform infrared spectroscopy, proton nuclear magnetic resonance spectroscopy, high resolution (13)C Cross polarization magic angle spinning nuclear magnetic resonance spectroscopy pyrolysis gas chromatography mass spectrometry, X ray diffraction, X ray fluorescence, matrix-assisted laser desorption/ionization time of flight tandem mass spectrometry, thermal analysis, and so on. 28629082 2 35 part_of hECM 380:383 arg1 The composition hECM The composition OGER Site hECM Q13201 position The composition of hECM was evaluated by quantifying the content of sulphated glycosaminoglycans (sGAG), fibronectin and laminin. 25497797 2 55 part_of CMP 380:382 arg1 The CMP peptide CMP The CMP peptide OGER Site CMP P21941 peptide The CMP peptide is known for its rather heterogeneous composition with respect to both genetic variation and multiple posttranslational modifications, including phosphorylation and O-linked glycosylation. 24950216 4 38 part_of protein 686:692 arg1 the ectodomain E protein the ectodomain PUBTATOR Site E protein 32430 ectodomain Previously, we studied a series of C-terminal truncation constructs expressing DENV type 4 prM/E or E proteins and found the ectodomain of E protein alone could be recognized by all 12 mAbs tested, suggesting E protein ectodomain as a potential subunit immunogen without inducing anti-prM response. 24950216 4 43 part_of E 754:754 arg1 E protein ectodomain E protein E protein ectodomain PUBTATOR Site E protein 32430 ectodomain Previously, we studied a series of C-terminal truncation constructs expressing DENV type 4 prM/E or E proteins and found the ectodomain of E protein alone could be recognized by all 12 mAbs tested, suggesting E protein ectodomain as a potential subunit immunogen without inducing anti-prM response. 24950216 4 107 part_of protein 756:762 arg1 E protein ectodomain E protein E protein ectodomain PUBTATOR Site E protein 32430 ectodomain Previously, we studied a series of C-terminal truncation constructs expressing DENV type 4 prM/E or E proteins and found the ectodomain of E protein alone could be recognized by all 12 mAbs tested, suggesting E protein ectodomain as a potential subunit immunogen without inducing anti-prM response. 24407590 11 13 part_of EGF-like 1687:1694 arg1 EGF-like peptides EGF EGF-like peptides OGER Site EGF P01132 peptides Together, these findings suggest that the EGFR may play a regulatory role in hepatocyte proliferation and lipid metabolism in adult male mice, explaining why elevated levels of EGF or EGF-like peptides have been positively correlated to increased cholesterol levels in human studies. 27381584 4 61 part_of CS-Ag 694:698 arg1 the biosynthesized chitosan-silver (CS-Ag) nanocomposites CS the biosynthesized chitosan-silver (CS-Ag) nanocomposites PUBTATOR Site CS 1431 nanocomposites The optical, structural, spectral, morphological and elemental studies of the biosynthesized chitosan-silver (CS-Ag) nanocomposites were characterized by several techniques. 28551019 7 48 part_of containing 1429:1438 arg1 pH 4.5 AND 15mmol/L D-Phe pH 4.5 15mmol/L D-Phe OGER AminoAcid pH 4 Q9NXG6 Phe The obtained optimized separation conditions were as follows: 15mmol/L dipotassium hydrogenphosphate solution (pH 4.5) containing 15mmol/L D-Phe, 20mmol/L CuSO4 and 20mmol/L γ-CD, separation voltage 15kV. 25501675 8 104 gly glycopeptides 1377:1389 arg2 over 90 glycopeptides over 90 glycopeptides glycopeptides From the trypsin-digested mixture of these two products, over 90 glycopeptides were identified by accurate mass matching. 28609623 2 36 gly glycoproteins 597:609 arg1 many glycoproteins many glycoproteins Fterm glycoproteins Comprehensive characterization of the phosphoproteome and glycoproteome requires highly specific and sensitive enrichment methods of purification of phosphopeptides and glycopeptides because many glycoproteins and phosphoproteins naturally occur at low abundances and substoichiometry. 28609623 2 117 gly glycopeptides 570:582 arg2 glycopeptides glycopeptides glycopeptides Comprehensive characterization of the phosphoproteome and glycoproteome requires highly specific and sensitive enrichment methods of purification of phosphopeptides and glycopeptides because many glycoproteins and phosphoproteins naturally occur at low abundances and substoichiometry. 24950216 0 105 part_of protein 51:57 arg1 the ectodomain protein the ectodomain Fterm Site protein ectodomain Characterization of the ectodomain of the envelope protein of dengue virus type 4: expression, membrane association, secretion and particle formation in the absence of precursor membrane protein. 25039673 0 45 gly endotoxin 28:36 arg1 Determinants endotoxin Determinants Fterm endotoxin Determinants of house dust, endotoxin, and β-(1→3)-D-glucan in homes of Danish children. 27325308 8 71 part_of ECM 1642:1644 arg1 the ECM composition ECM the ECM composition OGER Site ECM Q13201 position Using collagen and Matrigel in different compositions in sandwich cultures of hepatocytes, we observed differences in morphology, cellular arrangement and cell activity of PHH in dependence of the ECM composition. 28100988 3 37 gly released 325:332 arg1 glycoproteins AND N-glycans glycoproteins N-glycans Fterm glycoproteins N-glycans are typically released from glycoproteins by enzymes, while O-glycans are released from glycoproteins by chemical methods. 28100988 3 49 gly glycoproteins 339:351 arg1 glycoproteins glycoproteins Fterm glycoproteins N-glycans are typically released from glycoproteins by enzymes, while O-glycans are released from glycoproteins by chemical methods. 28100988 3 80 gly released 385:392 arg2 glycoproteins AND O-glycans glycoproteins O-glycans Fterm glycoproteins N-glycans are typically released from glycoproteins by enzymes, while O-glycans are released from glycoproteins by chemical methods. 28100988 3 94 gly glycoproteins 399:411 arg1 glycoproteins glycoproteins Fterm glycoproteins N-glycans are typically released from glycoproteins by enzymes, while O-glycans are released from glycoproteins by chemical methods. 27496768 4 66 gly glycoprotein 633:644 arg1 humanized Man5GlcNAc2 N-linked oligosaccharides glycoprotein humanized Man5GlcNAc2 N-linked oligosaccharides Fterm glycoprotein In the present study, we describe the generation of a Saccharomyces cerevisiae strain capable of producing a glycoprotein with humanized Man5GlcNAc2 N-linked oligosaccharides, an intermediate of mammalian hybrid- and complex-type oligosaccharides, while suppressing O-mannosylation. 28182562 7 61 gly channels 997:1004 arg1 complex structures channels complex structures Fterm channels Also, decomposing the sum of K+ currents is difficult because of complex structures and components of channels (e.g., , and ). 28349375 9 17 gly used 1390:1393 arg2 Chitosan-based biopolymer composites Chitosan-based biopolymer composites composites Chitosan-based biopolymer composites could be used for improved biomedical applications such as wound dressings, giving them enhanced properties. 28504146 6 45 part_of had 845:847 arg1 The loss factor AND two transition regions The loss factor two transition regions Fterm Site factor regions The loss factor had two transition regions, which gradually changed by merging together with increasing L-CNC content, and a broadening of the transition region was observed after postcure. 26554573 4 26 part_of PLaE-CS/AuNPs-GNs 789:805 arg1 PLaE-CS/AuNPs-GNs nanocomposites GNs PLaE-CS/AuNPs-GNs nanocomposites OGER Site GNs P15586 nanocomposites Highly pure plant esterase is produced from plants at low cost and shares the same inhibition mechanism with OPs as acetylcholinesterase, and then it was used to prepare PLaE-CS/AuNPs-GNs nanocomposites, which were systematically characterized using SEM, TEM, and UV-vis. 25423718 2 10 gly heterogeneity 409:421 arg1 the outer membrane lipopolysaccharide pool the outer membrane lipopolysaccharide pool Cultivation in the presence of the flavonoid was shown to result in altered serological characteristics of the bacteria, increased heterogeneity of the outer membrane lipopolysaccharide pool, as well as in modified composition and fatty acid ratio of lipid A. 28204541 5 69 gly epitopes 970:977 arg1 overall cell wall polysaccharide extractability epitopes overall cell wall polysaccharide extractability epitopes Glycome profiling analysis showed that both overall cell wall polysaccharide extractability and relative extractability of specific pectin and xylan epitopes were affected in pgm, suggesting extensive structural changes in pgm cell walls. 28970843 1 2 gly glycoproteins 207:219 arg1 cell wall polysaccharides glycoproteins cell wall polysaccharides Fterm glycoproteins UDP-sugars are essential precursors for glycosylation reactions producing cell wall polysaccharides, sucrose, glycoproteins, glycolipids, etc. 26993426 11 50 part_of C3 1865:1866 arg1 complement C3 (C3b/iC3b) deposition complement C3 complement C3 (C3b/iC3b) deposition PUBTATOR Site complement C3 718 position, In conclusion the initial proinflammatory cytokine responses are driven by the microspheres potential to trigger complement C3 (C3b/iC3b) deposition, leukocyte activation and binding through complement receptor CR3 (CD11b/CD18). 26993426 11 90 part_of complement 1854:1863 arg1 complement C3 (C3b/iC3b) deposition complement C3 complement C3 (C3b/iC3b) deposition PUBTATOR Site complement C3 718 position, In conclusion the initial proinflammatory cytokine responses are driven by the microspheres potential to trigger complement C3 (C3b/iC3b) deposition, leukocyte activation and binding through complement receptor CR3 (CD11b/CD18). 28690164 13 13 part_of chitosan/PVA/TiO2 1359:1375 arg1 chitosan/PVA/TiO2 composite PVA chitosan/PVA/TiO2 composite OGER Site PVA P32926 composite Therefore, chitosan/PVA/TiO2 composite can be a very useful material for dye removal. 27496768 5 60 gly glycoprotein 845:856 arg1 Man5GlcNAc2 glycoprotein Man5GlcNAc2 Fterm glycoprotein First, a yeast strain that produces a glycoprotein with Man5GlcNAc2 was isolated by introducing msdS encoding α-1,2-mannosidase into a strain synthesizing Man8GlcNAc2 N-linked oligosaccharides. 26616479 3 1 part_of NPs 683:685 arg1 the composition NPs the composition OGER Site NPs P0C0P6 position NPs were spherical (mean diameter of 830-1070 nm) with positive charge (+30-60 mV) depending on the composition of NPs. 28756861 7 22 part_of enzyme 961:966 arg1 the region enzyme the region Fterm Site enzyme region The second orientation occurred at pH 10 through the region of the whole enzyme containing the highest number of Lys residues. 26042710 2 29 part_of chitosan/gelatin/nanosilver 470:496 arg1 electrodeposition gelatin electrodeposition Fterm Site gelatin position Here, we present a new method to construct biopolymer/nanoparticle composite films with conductivity and antibacterial activity by electrodeposition of chitosan/gelatin/nanosilver. 26652382 7 21 part_of BMP-2 1400:1404 arg1 its osteoconductive composition BMP-2 its osteoconductive composition PUBTATOR Site BMP-2 650 position These results suggest that the hybrid membrane is very efficient in carrying BMP-2 and accelerates the bone healing process through the successful delivery of BMP-2 and its osteoconductive composition. 28182562 1 43 gly glycosylated 167:178 arg1 Cardiac ion channels Cardiac ion channels Fterm channels Cardiac ion channels are highly glycosylated membrane proteins with up to 30% of the protein's mass containing glycans. 29078183 3 11 gly glycosylated 404:415 arg1 a glycosylated domain a glycosylated domain domain The protein contained a hydrophobic patch and a glycosylated domain and due to its dual functionality, it was able to assemble at the interface of the carbon nanotubes and the nanofibrillated cellulose and thus enhance the interactions between them. 28606552 8 9 part_of BC/N-CDs 1028:1035 arg1 a novel BC/N-CDs composite CDs a novel BC/N-CDs composite OGER Site CDs Q92903 composite Furthermore, the results also indicate that a novel BC/N-CDs composite has great potential for the detection of Fe3+ ions based on membrane fluorescence materials. 25140501 6 42 gly glycoprotein 738:749 arg1 bovine serum fetuin glycoprotein bovine serum fetuin glycoprotein Fterm glycoprotein Magnetized Parkia pendula seeds gum with covalently immobilized Concanavalin A was used as an affinity matrix for the recognition of bovine serum fetuin glycoprotein. 27681534 9 20 gly used 1110:1113 arg2 The appropriate lipid composition The appropriate lipid composition position The appropriate lipid composition was used for the preparation of a larger quantity of liposomes coated by modified chitosan. 25688146 3 16 gly glycoprotein 864:875 arg1 a glycoprotein IIb/IIIa antagonist a glycoprotein IIb/IIIa antagonist Fterm glycoprotein We evaluated hospital variability in the composite use of American College of Cardiology/American Heart Association guideline-recommended therapies (adherence) and the proportion of treated patients with the recommended dose of heparins or a glycoprotein IIb/IIIa antagonist (safety), and its association with risk-adjusted in-hospital mortality and bleeding. 30198674 3 35 gly acid 713:716 arg1 H(2) H(2) H(2) Research with medium of sulfuric acid (H(2)SO(4)), dilute alkali (NaOH) and glycerin, and at different pretreatment temperature (117 and 135 ℃ in sulfuric acid (H(2)SO(4))and dilute alkali (NaOH) , 117 ℃ in glycerin) analyzed and compared the main changes of chemical composition before and after the bamboo processing, and further confirmed that the mechanism of the chemical conversion after chemical pretreatment of bamboo through the Fourier infrared spectrum. 26586655 5 13 part_of PPL/β-TCP 783:791 arg1 PPL/β-TCP composite PPL PPL/β-TCP composite OGER Site PPL O60437 composite Further, the compressive strength of PPL/β-TCP composite was significantly higher than Biopex-R. 27381584 6 41 part_of CS-Ag 1020:1024 arg1 the biosynthesized CS-Ag nanocomposites CS the biosynthesized CS-Ag nanocomposites PUBTATOR Site CS 1431 nanocomposites The antimicrobial activity of the biosynthesized CS-Ag nanocomposites exhibits zone of inhibition ranged between 09.666±0.577 and 19.000±1.000 (mm). 26586655 7 50 part_of PPL/β-TCP 1012:1020 arg1 PPL/β-TCP composite PPL PPL/β-TCP composite OGER Site PPL O60437 composite Bone formation was observed 5 weeks after injection of PPL/β-TCP composite, which was even more evident at 8 weeks; whereas, no bone formation was detected after injection of PPL alone. 26268558 3 41 part_of O-galactosylated 424:439 arg1 a poorly O-galactosylated hinge region gal a poorly O-galactosylated hinge region PUBTATOR Site gal 60498 region Because IgA1 in IgAN often has a poorly O-galactosylated hinge region, the solution structures of monomeric IgA1 from a healthy subject and three IgAN patients with four different O-galactosylation levels were studied. 26268558 3 56 part_of has 411:413 arg1 IgA1 AND a poorly O-galactosylated hinge region IgA1 a poorly O-galactosylated hinge region OGER Site Because IgA1 P01876 region Because IgA1 in IgAN often has a poorly O-galactosylated hinge region, the solution structures of monomeric IgA1 from a healthy subject and three IgAN patients with four different O-galactosylation levels were studied. 25113805 9 53 gly proteoglycan 1523:1534 arg1 the distal region the distal region the distal region Site region Histological analysis showed that collagen and proteoglycan in the distal region distributed differently from the proximal region. 27936727 5 45 part_of heparin 1196:1202 arg1 deposition heparin deposition Fterm Site heparin position Overall, our findings provide a simple yet effective method to increase deposition of functional heparin on the surface of ECM-based vascular grafts and thereby minimize thrombogenicity of decellularized tissue, overcoming a significant challenge in tissue engineering of bioartificial vessels and vascularized organs. 24950216 6 13 part_of E 1107:1107 arg1 E protein ectodomain E protein E protein ectodomain PUBTATOR Site E protein 32430 ectodomain METHODOLOGY/PRINCIPAL FINDINGS In this study, we investigated the expression, membrane association, glycosylation pattern, secretion and particle formation of E protein ectodomain of DENV4 in the presence or absence of prM protein. 24950216 6 66 part_of protein 1109:1115 arg1 E protein ectodomain E protein E protein ectodomain PUBTATOR Site E protein 32430 ectodomain METHODOLOGY/PRINCIPAL FINDINGS In this study, we investigated the expression, membrane association, glycosylation pattern, secretion and particle formation of E protein ectodomain of DENV4 in the presence or absence of prM protein. 26850145 9 73 part_of strain 1297:1302 arg1 scaffold-fiber composites strain scaffold-fiber composites Fterm Site strain composites Notably, mechanical performance of scaffold-fiber composites (elastic modulus, peak stress, strain at peak stress, and toughness) can be selectively manipulated by varying fiber-reinforcement geometry without affecting the native bioactivity of the collagen scaffold. 26453877 1 7 part_of GR/β-CD 255:261 arg1 β-cyclodextrin entrapped graphite (GR/β-CD) composite GR/β-CD β-cyclodextrin entrapped graphite (GR/β-CD) composite PUBTATOR Site GR/β-CD 65057 composite A simple dopamine (DA) electrochemical sensor was developed based on a screen-printed carbon electrode (SPCE) modified with β-cyclodextrin entrapped graphite (GR/β-CD) composite for the first time. 28609623 7 73 part_of phosphopeptides 2001:2015 arg1 256 different phosphoproteins phosphoproteins phosphopeptides Fterm Site phosphoproteins phosphopeptides Furthermore, we used CS@PGMA@IDA-Ti4+ to enrich for N-glycopeptides and phosphopeptides followed by PNGase F treatment, fractionated and separated N-glycopeptides and phosphopeptides with different eluents, and then analyzed by MS, a total of 423 (84.4 ID/μg, 3.525 ID/min) N-glycopeptides in 235 different glycoproteins and 422 (84.4 ID/μg, 3.517 ID/min) phosphopeptides in 256 different phosphoproteins which were finally identified in two independent LC-MS/MS runs (with a total time of 120 min) from 50 μg of mouse liver. 28609623 7 76 part_of N-glycopeptides 1919:1933 arg1 235 different glycoproteins glycoproteins N-glycopeptides Fterm Site glycoproteins N-glycopeptides Furthermore, we used CS@PGMA@IDA-Ti4+ to enrich for N-glycopeptides and phosphopeptides followed by PNGase F treatment, fractionated and separated N-glycopeptides and phosphopeptides with different eluents, and then analyzed by MS, a total of 423 (84.4 ID/μg, 3.525 ID/min) N-glycopeptides in 235 different glycoproteins and 422 (84.4 ID/μg, 3.517 ID/min) phosphopeptides in 256 different phosphoproteins which were finally identified in two independent LC-MS/MS runs (with a total time of 120 min) from 50 μg of mouse liver. 26426455 2 5 gly used 350:353 arg2 a tripolymeric composite a tripolymeric composite composite We report a curcumin nanoparticle with a tripolymeric composite that can be used as a delivery device for wound healing. 27067053 2 6 gly compositions 329:340 arg1 over 1100 glycopeptides over 1100 glycopeptides over 1100 glycopeptides Site glycopeptides Using wheat germ agglutinin lectin weak affinity chromatography to enrich modified peptides, followed by electron transfer dissociation (ETD)(1) fragmentation tandem mass spectrometry, glycan compositions on over 1100 glycopeptides from 270 proteins found in Arabidopsis inflorescence tissue were characterized. 27067053 2 20 gly proteins 378:385 arg1 glycan compositions proteins glycan compositions Fterm proteins Using wheat germ agglutinin lectin weak affinity chromatography to enrich modified peptides, followed by electron transfer dissociation (ETD)(1) fragmentation tandem mass spectrometry, glycan compositions on over 1100 glycopeptides from 270 proteins found in Arabidopsis inflorescence tissue were characterized. 27067053 2 28 gly glycopeptides 355:367 arg2 over 1100 glycopeptides over 1100 glycopeptides glycopeptides Using wheat germ agglutinin lectin weak affinity chromatography to enrich modified peptides, followed by electron transfer dissociation (ETD)(1) fragmentation tandem mass spectrometry, glycan compositions on over 1100 glycopeptides from 270 proteins found in Arabidopsis inflorescence tissue were characterized. 25272744 7 27 gly glycoprotein 1130:1141 arg1 glycoprotein glycoprotein Fterm glycoprotein The composition, size, and the zeta-potential of interaction products were assessed which allowed us to select the conditions for the preparation of pH-sensitive polyelectrolyte microparticles loaded with LF which would be able to gradually release glycoprotein under conditions that model the passage through the gastrointestinal tract of humans. 24507278 7 34 part_of SPG/AgNP 863:870 arg1 The SPG/AgNP nanocomposite SPG The SPG/AgNP nanocomposite OGER Site SPG E9PXB6 nanocomposite The SPG/AgNP nanocomposite was non-toxic for mouse fibroblast line (NIH-3T3) and human keratinocyte cell line (HaCaT). 25039673 1 49 gly endotoxin 166:174 arg1 determinants endotoxin determinants Fterm endotoxin Little is known about the geographic variation and determinants of bacterial endotoxin and β-(1,3)-D-glucan in Danish house dust. 24950216 6 91 gly glycosylation 1048:1060 arg1 E protein ectodomain E protein ectodomain ectodomain METHODOLOGY/PRINCIPAL FINDINGS In this study, we investigated the expression, membrane association, glycosylation pattern, secretion and particle formation of E protein ectodomain of DENV4 in the presence or absence of prM protein. 28609623 8 124 gly N-glycopeptides 2267:2281 arg2 N-glycopeptides N-glycopeptides N-glycopeptides The results demonstrated that the method based on CS@PGMA@IDA-Ti4+ to single-step enrichment of N-glycopeptides and phosphopeptides is simple, efficient, specific, and compatible to MS. It can be expected that CS@PGMA@IDA-Ti4+ would hold great applicability of modification-based proteomics to the precious and low amounts of clinical samples. 29078183 0 13 gly glycosylated 48:59 arg1 amphiphilic glycosylated proteins amphiphilic glycosylated proteins Fterm proteins Modification of carbon nanotubes by amphiphilic glycosylated proteins. 24447999 1 83 gly leucine-rich 122:133 arg1 a small leucine-rich proteoglycan leucine a small leucine-rich proteoglycan leucine Decorin is a small leucine-rich proteoglycan harboring a single glycosaminoglycan chain, which, in skin, is mainly composed of dermatan sulfate (DS). 28978875 3 0 part_of gut 320:322 arg1 gut microbial composition gut gut microbial composition PUBTATOR Site gut 110006 position This study evaluated the effects of AGO on obese phenotype and gut microbial composition in mice. 24136552 2 28 gly glycoproteins 375:387 arg1 glycoproteins glycoproteins Fterm glycoproteins Consequently, lectin affinity chromatography represents a valuable tool for glycoproteome studies, allowing enrichment of glycoproteins in samples prior to their identification by mass spectrometry (MS). 26268558 8 99 part_of Fab 1662:1664 arg1 the Fab and Fc regions Fab the Fab and Fc regions PUBTATOR Site Fab 2187 regions The solution structures for full-length IgA1 showed extended hinges and the Fab and Fc regions were positioned asymmetrically to provide ample space for the functionally-important binding of two FcαR receptors to its Fc region. 27381584 5 21 part_of CS-Ag 774:778 arg1 The synthesized CS-Ag nanocomposites CS The synthesized CS-Ag nanocomposites PUBTATOR Site CS 1431 nanocomposites The synthesized CS-Ag nanocomposites exhibit particle size around 20nm and were further exploited for potent biological applications in nanomedicine due to their nanometric sizes and biocompatibility of chitosan. 26078184 3 9 part_of Fe3O4/P 543:549 arg1 the Fe3O4/P(β-CD) composite Fe3O4/P(β-CD the Fe3O4/P(β-CD) composite PUBTATOR Site Fe3O4/P(β-CD 65057 composite The catalytic activity of the Fe3O4/P(β-CD) composite was evaluated with regard to the effects of catalyst particle size and species, pH value, level of catalyst, benzoic acid concentration and reaction time. 26078184 3 29 part_of β-CD 551:554 arg1 the Fe3O4/P(β-CD) composite Fe3O4/P(β-CD the Fe3O4/P(β-CD) composite PUBTATOR Site Fe3O4/P(β-CD 65057 composite The catalytic activity of the Fe3O4/P(β-CD) composite was evaluated with regard to the effects of catalyst particle size and species, pH value, level of catalyst, benzoic acid concentration and reaction time. 24742328 5 9 part_of has 719:721 arg1 this protein AND two domains this protein two domains Fterm Site protein domains Initial sequence analysis predicted that this protein has two domains, one on the N- and one on the C-terminal. 26333843 3 14 part_of β-cyclodextrin 625:638 arg1 composition β-cyclodextrin composition Fterm Site β-cyclodextrin position The influence factors, including the type of substituted β-cyclodextrin, composition of organic phase, concentration of chiral selector, pH value of the aqueous phase, and equilibrium temperature were optimized by enantioselective liquid-liquid extraction. 24786486 3 11 part_of SPH 538:540 arg1 SPH composite SPH SPH composite OGER Site SPH P0C7M3 composite In this study, baclofen extended release superporous hydrogel (SPH) systems, including conventional SPH, SPH composite and SPH hybrid (SPHH), were prepared aiming to increase the residence of baclofen at its absorption window. 25882010 0 57 part_of β-cyclodextrin 80:93 arg1 chitosan/sulfobutyl ether β-cyclodextrin composites β-cyclodextrin chitosan/sulfobutyl ether β-cyclodextrin composites Fterm Site β-cyclodextrin composites Slow-release of famotidine from tablets consisting of chitosan/sulfobutyl ether β-cyclodextrin composites. 25766788 5 17 part_of acac 875:878 arg1 thermal decomposition Fe(acac thermal decomposition OGER Site Fe(acac Q13085 position The MNPs were produced by thermal decomposition of Fe(acac)3 in organic solvent and, after ligand-exchange with meso-2,3-dimercaptosuccinic acid (DMSA), GA coating was achieved by the establishment of a covalent bond between DMSA and GA moieties. 28629082 5 41 part_of hECM 824:827 arg1 hECM composition hECM hECM composition OGER Site hECM Q13201 position These differences in hECM composition influenced the polymerization and the structural characteristics of the fibrillar gel network. 25081519 7 67 part_of Pectin 1099:1104 arg1 Pectin composition Pectin Pectin composition Fterm Site Pectin position Pectin composition (acidic and neutral sugars) and physicochemical properties (molar mass and intrinsic viscosity) were determined. 29078183 3 0 part_of contained 368:376 arg1 The protein AND a glycosylated domain The protein a glycosylated domain Fterm Site protein domain The protein contained a hydrophobic patch and a glycosylated domain and due to its dual functionality, it was able to assemble at the interface of the carbon nanotubes and the nanofibrillated cellulose and thus enhance the interactions between them. 26042710 0 33 part_of chitosan/gelatin/nanosilver 21:47 arg1 Electrodeposition gelatin Electrodeposition Fterm Site gelatin position Electrodeposition of chitosan/gelatin/nanosilver: A new method for constructing biopolymer/nanoparticle composite films with conductivity and antibacterial activity. 28100988 4 89 gly glycoproteins 507:519 arg1 N- glycoproteins N- Fterm glycoproteins It is important to identify and quantify both N- and O-linked glycans of glycoproteins to determine the changes of glycans. 28100988 4 89 gly glycoproteins 507:519 arg1 O-linked glycans glycoproteins O-linked glycans Fterm glycoproteins It is important to identify and quantify both N- and O-linked glycans of glycoproteins to determine the changes of glycans. 29133089 8 13 gly used 1204:1207 arg2 the prepared nanocomposite the prepared nanocomposite nanocomposite The cytotoxic effects suggest that the prepared nanocomposite could be used as promising candidates for biomedical applications. 27171920 2 45 part_of BC-HAP 290:295 arg1 Bacterial cellulose-hydroxyapatite (BC-HAP) composites HAP Bacterial cellulose-hydroxyapatite (BC-HAP) composites OGER Site HAP O95197 composites Bacterial cellulose-hydroxyapatite (BC-HAP) composites with various mass ratio of the components (BC-25HAP, BC-4HAP, and BC-HAP) were prepared by a novel method of growing HAP nanocrystals (the linear size ≤30 nm) in water solutions in the presence of the BC gel-film micro-fragments. 24950216 8 23 part_of E 1417:1417 arg1 E protein ectodomain E protein E protein ectodomain PUBTATOR Site E protein 32430 ectodomain In the absence of prM protein, E protein ectodomain can secrete as well as form particles of approximately 49 nm in diameter, as revealed by sucrose gradient ultracentrifugation with or without detergent and electron microscopy. 24950216 8 76 part_of protein 1419:1425 arg1 E protein ectodomain E protein E protein ectodomain PUBTATOR Site E protein 32430 ectodomain In the absence of prM protein, E protein ectodomain can secrete as well as form particles of approximately 49 nm in diameter, as revealed by sucrose gradient ultracentrifugation with or without detergent and electron microscopy. 26741400 0 34 part_of Protein 56:62 arg1 Epichlorohydrin-Cross-linked Hydroxyethyl Cellulose/Soy Protein Isolate Composite Soy Protein Isolate Epichlorohydrin-Cross-linked Hydroxyethyl Cellulose/Soy Protein Isolate Composite PUBTATOR Site Soy Protein Isolate 1113 Composite Epichlorohydrin-Cross-linked Hydroxyethyl Cellulose/Soy Protein Isolate Composite Films as Biocompatible and Biodegradable Implants for Tissue Engineering. 26741400 0 37 part_of Cellulose/Soy 42:54 arg1 Epichlorohydrin-Cross-linked Hydroxyethyl Cellulose/Soy Protein Isolate Composite Soy Protein Isolate Epichlorohydrin-Cross-linked Hydroxyethyl Cellulose/Soy Protein Isolate Composite PUBTATOR Site Soy Protein Isolate 1113 Composite Epichlorohydrin-Cross-linked Hydroxyethyl Cellulose/Soy Protein Isolate Composite Films as Biocompatible and Biodegradable Implants for Tissue Engineering. 26741400 0 44 part_of Isolate 64:70 arg1 Epichlorohydrin-Cross-linked Hydroxyethyl Cellulose/Soy Protein Isolate Composite Soy Protein Isolate Epichlorohydrin-Cross-linked Hydroxyethyl Cellulose/Soy Protein Isolate Composite PUBTATOR Site Soy Protein Isolate 1113 Composite Epichlorohydrin-Cross-linked Hydroxyethyl Cellulose/Soy Protein Isolate Composite Films as Biocompatible and Biodegradable Implants for Tissue Engineering. 27898917 16 122 part_of database 2130:2137 arg1 chemical composition database chemical composition Fterm Site database position, The results of the present study provide a comprehensive database on chemical composition, physical characteristics, and SID of CP and AA of 8 rye genotypes grown under same conditions. 24950216 9 18 part_of E 1666:1666 arg1 E protein ectodomain E protein E protein ectodomain PUBTATOR Site E protein 32430 ectodomain Mutational analysis revealed that the secretion of E protein ectodomain was affected by N-linked glycosylation and could be restored by treatment with ammonia chloride. 24950216 9 71 part_of protein 1668:1674 arg1 E protein ectodomain E protein E protein ectodomain PUBTATOR Site E protein 32430 ectodomain Mutational analysis revealed that the secretion of E protein ectodomain was affected by N-linked glycosylation and could be restored by treatment with ammonia chloride. 27286189 5 14 part_of site 900:903 arg1 caspase-3 caspase-3 site PUBTATOR Site caspase-3 836 site Cleavage of DEVD-S-DOX into free DOX by caspase-3 continued with repetitive activation of caspase-3 and cleavage of DEVD-S-DOX at the tumor site. 24950216 7 74 gly contained 1255:1263 arg1 E protein ectodomain AND complex glycans E protein ectodomain complex glycans ectodomain E protein ectodomain associated with membrane in or beyond trans-Golgi and contained primarily complex glycans, whereas full-length E protein associated with ER membrane and contained high mannose glycans. 27325308 3 64 part_of ECM 658:660 arg1 different ECM compositions ECM different ECM compositions OGER Site ECM Q13201 positions The aim of the present study was to investigate the influence of different ECM compositions on morphology, cellular arrangement and bile canaliculi formation as well as bile excretion processes in PHH sandwich cultures systematically. 26586655 11 2 part_of PPL/β-TCP 1536:1544 arg1 PPL/β-TCP composite PPL PPL/β-TCP composite OGER Site PPL O60437 composite In a pig vertebral bone defect model, defects treated with PPL/β-TCP composite were almost completely replaced by new bone; whereas, PPL alone failed to induce bone formation. 24136552 0 21 gly N-glycoprotein 0:13 arg1 N-glycoprotein N-glycoprotein Fterm N-glycoprotein N-glycoprotein enrichment by lectin affinity chromatography. 27067053 4 31 gly glycopeptides 585:597 arg2 the identified glycopeptides the identified glycopeptides glycopeptides Among the identified glycopeptides were four modified in nonconsensus glycosylation motifs. 27067053 4 35 gly glycosylation 634:646 arg2 nonconsensus glycosylation motifs nonconsensus glycosylation motifs motifs Among the identified glycopeptides were four modified in nonconsensus glycosylation motifs. 29172443 14 73 part_of protein-transduction 2642:2661 arg1 protein-transduction domains protein protein-transduction domains Fterm Site protein domains CPPs were indeed first identified as protein-transduction domains from the human immunodeficiency virus (HIV) TAT protein and the Antennapedia homeoprotein, a transcription factor from Drosophila. 29172443 14 128 part_of protein 2719:2725 arg1 protein-transduction domains HIV) TAT protein protein-transduction domains OGER Site HIV) TAT protein P17735 domains CPPs were indeed first identified as protein-transduction domains from the human immunodeficiency virus (HIV) TAT protein and the Antennapedia homeoprotein, a transcription factor from Drosophila. 29172443 14 156 part_of homeoprotein 2748:2759 arg1 protein-transduction domains homeoprotein protein-transduction domains Fterm Site homeoprotein domains CPPs were indeed first identified as protein-transduction domains from the human immunodeficiency virus (HIV) TAT protein and the Antennapedia homeoprotein, a transcription factor from Drosophila. 28118510 0 68 gly peptidoglycan 18:30 arg1 the Bacillus subtilis cell-division site the Bacillus subtilis cell-division site site Pentapeptide-rich peptidoglycan at the Bacillus subtilis cell-division site. 25184545 6 26 gly disaccharide 862:873 arg1 threonine threonine threonine AminoAcid threonine BLM is more potent than deglycoBLM in supercoiled plasmid DNA relaxation, while the analogue having the disaccharide on threonine was less active than deglycoBLM and the analogue containing the C-terminal disaccharide was slightly more potent. 25184545 4 60 gly attached 535:542 arg1 deglycobleomycin AND the disaccharide moiety deglycobleomycin positions, the disaccharide moiety Fterm deglycobleomycin positions, To explore this possibility, BLM analogues were prepared in which the disaccharide moiety was attached to deglycobleomycin at novel positions, namely, via the threonine moiety or C-terminal substituent. 25423718 3 1 gly fragment 718:725 arg1 the terminal β-D-Glcp residue the terminal β-D-Glcp residue The flavonoid was shown to induce the synthesis of the O-specific polysaccharide with the repeating structure represented by a tetrasaccharide consisting of a linear trisaccharide fragment of α-L-Rhap residues in the main chain and the terminal β-D-Glcp residue. 25423718 3 13 gly residues 739:746 arg1 a linear trisaccharide fragment residues in a linear trisaccharide fragment residues in The flavonoid was shown to induce the synthesis of the O-specific polysaccharide with the repeating structure represented by a tetrasaccharide consisting of a linear trisaccharide fragment of α-L-Rhap residues in the main chain and the terminal β-D-Glcp residue. 25423718 3 14 gly residue 792:798 arg1 a linear trisaccharide fragment a linear trisaccharide fragment a linear trisaccharide fragment The flavonoid was shown to induce the synthesis of the O-specific polysaccharide with the repeating structure represented by a tetrasaccharide consisting of a linear trisaccharide fragment of α-L-Rhap residues in the main chain and the terminal β-D-Glcp residue. 25423718 3 35 gly residues 739:746 arg1 the terminal β-D-Glcp residue residues in the terminal β-D-Glcp residue residues in The flavonoid was shown to induce the synthesis of the O-specific polysaccharide with the repeating structure represented by a tetrasaccharide consisting of a linear trisaccharide fragment of α-L-Rhap residues in the main chain and the terminal β-D-Glcp residue. 27773385 6 31 gly O-fucosylation 1473:1486 arg1 thrombospondin-like repeat domains thrombospondin-like repeat domains In schizophrenia, we found increased expression of POFUT2, a fucosyltransferase uniquely responsible for O-fucosylation of thrombospondin-like repeat domains that is involved in a non-canonical endoplasmic reticulum quality control pathway. 27773385 6 100 gly domains 1518:1524 arg1 O-fucosylation O-fucosylation In schizophrenia, we found increased expression of POFUT2, a fucosyltransferase uniquely responsible for O-fucosylation of thrombospondin-like repeat domains that is involved in a non-canonical endoplasmic reticulum quality control pathway. 25201210 2 17 gly used 369:372 arg2 The CNT-CH composite deposited The CNT-CH composite deposited deposited The CNT-CH composite deposited on indium tin oxide (ITO)-coated glass electrode has been used to covalently interact with anti-apolipoprotein B (antibody: AAB) via a co-entrapment method. 26358415 8 33 part_of amylopectin 1521:1531 arg1 the final composition structure of amylopectin the final composition Fterm Site structure of amylopectin position These data add to the knowledge of how the properties of the BE influence the final composition of starch and fine structure of amylopectin. 28602197 4 48 part_of β-CDs-GQDs 808:817 arg1 The β-CDs-GQDs composites CDs The β-CDs-GQDs composites OGER Site CDs Q92903 composites The β-CDs-GQDs composites were fabricated as modification layer of electrodes. 26268558 1 5 part_of contains 204:211 arg1 Native IgA1 AND an O-galactosylated 23-residue hinge region Native IgA1 an O-galactosylated 23-residue hinge region OGER Site Native IgA1 P01876 region Native IgA1, for which no crystal structure is known, contains an O-galactosylated 23-residue hinge region that joins its Fab and Fc regions. 24141552 4 22 part_of strain 619:624 arg1 the biodiversity composition strain the biodiversity composition Fterm Site strain position Now, we describe the biodiversity composition of these biofilms and the isolation from it of a new cyanobacterial strain. 28609623 7 8 gly N-glycopeptides 1697:1711 arg2 N-glycopeptides N-glycopeptides N-glycopeptides Furthermore, we used CS@PGMA@IDA-Ti4+ to enrich for N-glycopeptides and phosphopeptides followed by PNGase F treatment, fractionated and separated N-glycopeptides and phosphopeptides with different eluents, and then analyzed by MS, a total of 423 (84.4 ID/μg, 3.525 ID/min) N-glycopeptides in 235 different glycoproteins and 422 (84.4 ID/μg, 3.517 ID/min) phosphopeptides in 256 different phosphoproteins which were finally identified in two independent LC-MS/MS runs (with a total time of 120 min) from 50 μg of mouse liver. 28609623 7 26 gly N-glycopeptides 1792:1806 arg2 N-glycopeptides N-glycopeptides N-glycopeptides Furthermore, we used CS@PGMA@IDA-Ti4+ to enrich for N-glycopeptides and phosphopeptides followed by PNGase F treatment, fractionated and separated N-glycopeptides and phosphopeptides with different eluents, and then analyzed by MS, a total of 423 (84.4 ID/μg, 3.525 ID/min) N-glycopeptides in 235 different glycoproteins and 422 (84.4 ID/μg, 3.517 ID/min) phosphopeptides in 256 different phosphoproteins which were finally identified in two independent LC-MS/MS runs (with a total time of 120 min) from 50 μg of mouse liver. 28609623 7 39 gly N-glycopeptides 1919:1933 arg2 423 (84.4 ID/μg, 3.525 ID/min) N-glycopeptides 423 (84.4 ID/μg, 3.525 ID/min) N-glycopeptides N-glycopeptides Furthermore, we used CS@PGMA@IDA-Ti4+ to enrich for N-glycopeptides and phosphopeptides followed by PNGase F treatment, fractionated and separated N-glycopeptides and phosphopeptides with different eluents, and then analyzed by MS, a total of 423 (84.4 ID/μg, 3.525 ID/min) N-glycopeptides in 235 different glycoproteins and 422 (84.4 ID/μg, 3.517 ID/min) phosphopeptides in 256 different phosphoproteins which were finally identified in two independent LC-MS/MS runs (with a total time of 120 min) from 50 μg of mouse liver. 28609623 7 47 gly glycoproteins 1952:1964 arg1 235 different glycoproteins 235 different glycoproteins Fterm glycoproteins Furthermore, we used CS@PGMA@IDA-Ti4+ to enrich for N-glycopeptides and phosphopeptides followed by PNGase F treatment, fractionated and separated N-glycopeptides and phosphopeptides with different eluents, and then analyzed by MS, a total of 423 (84.4 ID/μg, 3.525 ID/min) N-glycopeptides in 235 different glycoproteins and 422 (84.4 ID/μg, 3.517 ID/min) phosphopeptides in 256 different phosphoproteins which were finally identified in two independent LC-MS/MS runs (with a total time of 120 min) from 50 μg of mouse liver. 26349395 0 3 part_of Medium 72:77 arg1 Culture Medium Composition Medium Culture Medium Composition OGER Site Medium position, Protein Corona Formation on Magnetite Nanoparticles: Effects of Culture Medium Composition, and Its Consequences on Superparamagnetic Nanoparticle Cytotoxicity. 28576004 0 49 gly poly 15:18 arg1 composite composite composite Preparation of poly(lactic-co-glycolic acid) and chitosan composite nanocarriers via electrostatic self assembly for oral delivery of insulin. 25880740 16 83 part_of ECM 2138:2140 arg1 the composition ECM the composition OGER Site ECM Q13201 position CONCLUSIONS Herein we described the antibiosis relationship of S. aureus against A. fumigatus during in vitro biofilm formation, and report the composition of the ECM formed. 26366533 2 18 gly utilized 326:333 arg2 This composite This composite composite This composite was utilized for the removal of methyl orange (MO) from aqueous solutions. 26985789 1 41 gly glycosylated 158:169 arg1 Proteoglycans proteins Proteoglycans Fterm proteins Proteoglycans (PGs) are heavily glycosylated proteins that play major structural and biological roles in many tissues. 27842820 4 36 part_of CNC/CTAB/Ag 589:599 arg1 The obtained CNC/CTAB/Ag nanohybrid composite CNC The obtained CNC/CTAB/Ag nanohybrid composite OGER Site CNC P32418 composite The obtained CNC/CTAB/Ag nanohybrid composite was characterized by ultraviolet-visible (UV-vis) spectroscopy, transmission electron microscopy (TEM) and energy dispersive X-ray spectroscopy (EDX). 27888663 4 6 part_of PPB 687:689 arg1 composition PPB composition OGER Site PPB P15515 position Previous studies have investigated the correlation between lignin and biomethane yields of unprocessed lignocellulosic materials; nevertheless, there is limited knowledge regarding the relationship between the AD kinetic parameters and composition of PPB. 28978875 12 44 part_of gut 1586:1588 arg1 the gut microbial composition gut the gut microbial composition PUBTATOR Site gut 110006 position Although the definitive role of gut microbes of AGO-received mice is still unknown, our data demonstrate the possibility that AGO administration affects the gut microbial composition and inhibits obesity in mice. 25586744 0 17 part_of O-antigen 107:115 arg1 composition O-antigen composition Cterm Site O-antigen position A BTP1 prophage gene present in invasive non-typhoidal Salmonella determines composition and length of the O-antigen of the lipopolysaccharide. 29254023 0 11 part_of nanocomposite 37:49 arg1 biologically extracted chitin chitin nanocomposite Fterm Site chitin nanocomposite Production and characterization of a nanocomposite of highly crystalline nanowhiskers from biologically extracted chitin in enzymatic poly(ε-caprolactone). 29254023 0 41 part_of chitin 114:119 arg1 a nanocomposite chitin a nanocomposite Fterm Site chitin nanocomposite Production and characterization of a nanocomposite of highly crystalline nanowhiskers from biologically extracted chitin in enzymatic poly(ε-caprolactone). 26268558 7 77 gly Asn 1409:1411 arg1 the N-glycans Asn(263) the N-glycans Asn(263) The final models indicated that the N-glycans at Asn(263) were folded back against the Fc surface, the C-terminal tailpiece conformations were undefined and hinge O-galactosylation had little effect on the solution structure. 25664869 7 9 part_of PHB 1265:1267 arg1 crystalline regions PHB crystalline regions OGER Site PHB P35232 regions The reduction of crystallinity indicated the grafting reaction occurred not just in the amorphous region but also slightly in crystalline regions of both cellulose and PHB. 26401638 2 18 part_of RECC 280:283 arg1 RECC xanthate (RECCX) composites RECC RECC xanthate (RECCX) composites OGER Site RECC Q9H3R2 composites RECCs were modified with carbon disulfide (CS2) to obtain RECC xanthate (RECCX) composites. 29269154 3 49 part_of ASD 430:432 arg1 ASD compositions ASD ASD compositions OGER Site ASD P51689 positions One important criterion for the development of ASD compositions is the physical stability. 25327182 0 5 part_of composition 140:150 arg1 pigs pigs composition OGER Site pigs Q96S52 position Diets high in resistant starch and arabinoxylan modulate digestion processes and SCFA pool size in the large intestine and faecal microbial composition in pigs. 27526028 4 20 part_of laminin-G-like 705:718 arg1 laminin-G-like (LG) domains 4 and 5 (LG4 and LG5) laminin laminin-G-like (LG) domains 4 and 5 (LG4 and LG5) OGER Site laminin domains The atomic details of matrix binding were revealed by a high-resolution crystal structure of laminin-G-like (LG) domains 4 and 5 (LG4 and LG5) of laminin-α2 bound to a LARGE-synthesized oligosaccharide. 27526028 4 32 part_of laminin-α2 758:767 arg1 laminin-G-like (LG) domains 4 and 5 (LG4 and LG5) laminin-α2 laminin-G-like (LG) domains 4 and 5 (LG4 and LG5) PUBTATOR Site laminin-α2 16773 domains The atomic details of matrix binding were revealed by a high-resolution crystal structure of laminin-G-like (LG) domains 4 and 5 (LG4 and LG5) of laminin-α2 bound to a LARGE-synthesized oligosaccharide. 25586744 7 45 part_of has 852:854 arg1 This tailspike protein AND a putative endorhamnosidase domain This tailspike protein a putative endorhamnosidase domain Fterm Site protein domain This tailspike protein has a putative endorhamnosidase domain and thus may mediate O-antigen cleavage. 26015261 4 103 gly site 721:724 arg1 the Fc glycan composition N297 site the Fc glycan composition N297 site Modulations of the Fc glycan composition at the N297 site by selective mutations or afucosylation have been explored as strategies to develop bio-better therapeutics with enhanced ADCC activity. 28659912 0 16 part_of Hemocyanin 21:30 arg1 C-Terminal Domain Hemocyanin C-Terminal Domain Fterm Hemocyanin C-Terminal Domain of Hemocyanin, a Major Antimicrobial Protein from Litopenaeus vannamei: Structural Homology with Immunoglobulins and Molecular Diversity. 26586655 6 68 part_of PPL/β-TCP 878:886 arg1 PPL/β-TCP composite PPL PPL/β-TCP composite OGER Site PPL O60437 composite Next, in vivo osteoconductivity of PPL/β-TCP composite was investigated in a murine intramedular injection model. 24047541 5 2 part_of simvastatin 820:830 arg1 their composition simvastatin their composition Fterm Site simvastatin position, Release profiles of simvastatin delivering cryogel scaffolds depending on their composition, hydrophobicity or hydrophilicity of loaded simvastatin and the medium temperature were demonstrated. 25501675 12 2 gly glycoproteins 1954:1966 arg1 glycoproteins glycoproteins Fterm glycoproteins The results demonstrate that this method could be utilized for biosimilarity determination and counterfeit identification of glycoproteins. 24382825 5 57 part_of HAp/chitosan 1373:1384 arg1 HAp/chitosan composites HAp HAp/chitosan composites PUBTATOR Site HAp 218772 composites Excellent cell spreading and proliferation of osteoblastic MC3T3-E1 cells evidenced on microscopic conglomerates of HAp nanoparticles in vitro also markedly diminished on HAp/chitosan composites. 26401638 10 23 part_of REC 1124:1126 arg1 RECCX composites REC RECCX composites OGER Site REC Q9UIJ5 composites RECCXs were competitive with other absorbents, because REC, carbon layers and xanthate groups in RECCX composites all contributed to the Pb(2+) adsorption. 26586655 8 43 part_of PPL/β-TCP 1159:1167 arg1 PPL/β-TCP composite PPL PPL/β-TCP composite OGER Site PPL O60437 composite We then applied PPL/β-TCP composite to a rabbit ulnar bone defect model and observed bone formation comparable to that induced by Biopex-R. 26078184 2 27 part_of β-CD 433:436 arg1 a Fe3O4/P(β-CD) composite Fe3O4/P(β-CD a Fe3O4/P(β-CD) composite PUBTATOR Site Fe3O4/P(β-CD 65057 composite The fluorescence enhancement obtained by attaching a β-cyclodextrin polymer (Pβ(-CD)) to the surfaces of Fe3O4 magnetic microspheres (Fe3O4 MMs) to generate a Fe3O4/P(β-CD) composite allowed the rapid, sensitive and selective analysis of glucose. 26078184 2 34 part_of Fe3O4/P 425:431 arg1 a Fe3O4/P(β-CD) composite Fe3O4/P(β-CD a Fe3O4/P(β-CD) composite PUBTATOR Site Fe3O4/P(β-CD 65057 composite The fluorescence enhancement obtained by attaching a β-cyclodextrin polymer (Pβ(-CD)) to the surfaces of Fe3O4 magnetic microspheres (Fe3O4 MMs) to generate a Fe3O4/P(β-CD) composite allowed the rapid, sensitive and selective analysis of glucose. 25435386 6 57 part_of m 1590:1590 arg1 a factor ~16 factor m Fterm SpecificSite factor m(4) Utilizing a fibril-reinforced finite element model, we estimated the poroelastic properties of mouse cartilage over a wide range of loading rates for the first time, and show that the hydraulic permeability increased by a factor ~16 from knormal=7.80×10(-16)±1.3×10(-16) m(4)/N s to kGAG-depleted=1.26×10(-14)±6.73×10(-15) m(4)/N s after GAG depletion. 27649169 8 37 part_of silk-CNC 1445:1452 arg1 silk-CNC composites CNC silk-CNC composites OGER Site CNC P32418 composites We suggest a model for silk-CBD assembly that implicates CBD in the central role of driving the dimerization of spider silk monomers, a process essential to the molecular assembly of spider-silk nanofibers and silk-CNC composites. 27445084 1 28 part_of has 168:170 arg1 SSA AND a size-dependent, complex composition SSA a size-dependent, complex composition OGER Site SSA P10155 position Recent studies have shown that sea spray aerosol (SSA) has a size-dependent, complex composition consisting of biomolecules and biologically derived organic compounds in addition to salts. 29376970 3 94 part_of cyclodextrin 817:828 arg1 its composition cyclodextrin its composition Fterm Site cyclodextrin position AIM The objective of the present study was to evaluate the influence of the phytotherapeutic preparation (Phytocost) having cyclodextrin in its composition on the restoration of the cartilaginous and bony tissues based on the experimental research with the use of the OP experimental model. 25857992 2 21 part_of ABS/CNC 458:464 arg1 the ABS/CNC nanocomposite ABS the ABS/CNC nanocomposite OGER Site ABS Q9UJV9 nanocomposite The two-stage process includes making high-CNC content (70 wt%) master batch pellets, then mixing acrylonitrile-butadiene-styrene (ABS) and maleic anhydride grafted polyethylene with the master batch pellets to prepare the ABS/CNC nanocomposite in extruder. 24950216 7 3 part_of protein 1182:1188 arg1 E protein ectodomain E protein E protein ectodomain PUBTATOR Site E protein 32430 ectodomain E protein ectodomain associated with membrane in or beyond trans-Golgi and contained primarily complex glycans, whereas full-length E protein associated with ER membrane and contained high mannose glycans. 24950216 7 31 part_of E 1180:1180 arg1 E protein ectodomain E protein E protein ectodomain PUBTATOR Site E protein 32430 ectodomain E protein ectodomain associated with membrane in or beyond trans-Golgi and contained primarily complex glycans, whereas full-length E protein associated with ER membrane and contained high mannose glycans. 25501675 10 32 gly glycosylation 1592:1604 arg2 a specific glycosylation site a specific glycosylation site site The relative amount of each glycoform at a specific glycosylation site was determined based on reporter signal intensities of the TMT labeling reagents. 24136552 4 24 gly glycoproteins 746:758 arg1 glycoproteins glycoproteins Fterm glycoproteins This chapter outlines a strategy to generate samples enriched with glycoproteins from bulk plant tissues prior to further characterization by MS, or other techniques. 27496768 1 42 gly glycoproteins 146:158 arg1 glycoproteins glycoproteins Fterm glycoproteins Yeast cells have been engineered for the production of glycoproteins as biopharmaceuticals with humanized N-linked oligosaccharides. 25460985 4 7 gly proteins 719:726 arg1 the polysaccharide COC group proteins the polysaccharide COC group Fterm proteins Fourier transform-infrared spectroscopy analysis revealed changes in the polysaccharide COC group and the carboxyl group of proteins in the EPS in the presence of CuO NPs. 25501675 0 84 gly glycoprotein 77:88 arg1 glycoprotein therapeutics glycoprotein therapeutics Fterm glycoprotein Direct site-specific glycoform identification and quantitative comparison of glycoprotein therapeutics: imiglucerase and velaglucerase alfa. 28251198 3 1 part_of Ca3 323:325 arg1 SA-coated CPO@Ca3(PO4)2 hybrid composites Ca3 SA-coated CPO@Ca3(PO4)2 hybrid composites OGER Site Ca3 P07451 composites SA-coated CPO@Ca3(PO4)2 hybrid composites displayed robust reusability under acidic conditions, maintaining more than 85% of the catalytic activity after 12 recycles. 28251198 3 15 part_of SA-coated 309:317 arg1 SA-coated CPO@Ca3(PO4)2 hybrid composites SA-coated CPO SA-coated CPO@Ca3(PO4)2 hybrid composites OGER Site SA-coated CPO P36551 composites SA-coated CPO@Ca3(PO4)2 hybrid composites displayed robust reusability under acidic conditions, maintaining more than 85% of the catalytic activity after 12 recycles. 28251198 3 17 part_of CPO 319:321 arg1 SA-coated CPO@Ca3(PO4)2 hybrid composites SA-coated CPO SA-coated CPO@Ca3(PO4)2 hybrid composites OGER Site SA-coated CPO P36551 composites SA-coated CPO@Ca3(PO4)2 hybrid composites displayed robust reusability under acidic conditions, maintaining more than 85% of the catalytic activity after 12 recycles. 26078184 6 46 part_of Fe3O4/P 1063:1069 arg1 the Fe3O4/P(β-CD) composite Fe3O4/P(β-CD the Fe3O4/P(β-CD) composite PUBTATOR Site Fe3O4/P(β-CD 65057 composite The reusability of the Fe3O4/P(β-CD) composite was also investigated after 10 successive runs. 26078184 6 73 part_of β-CD 1071:1074 arg1 the Fe3O4/P(β-CD) composite Fe3O4/P(β-CD the Fe3O4/P(β-CD) composite PUBTATOR Site Fe3O4/P(β-CD 65057 composite The reusability of the Fe3O4/P(β-CD) composite was also investigated after 10 successive runs. 28659912 3 14 part_of domain 523:528 arg1 highly variable genetic sequence domain highly variable genetic sequence sequence Here, we showed that the C-terminal domain of hemocyanin (HMC) from shrimp Litopenaeus vannamei contained an evolutionary conserved domain with highly variable genetic sequence, which is structurally homologous to immunoglobulin (Ig). 28659912 3 22 part_of hemocyanin 437:446 arg1 the C-terminal domain hemocyanin the C-terminal domain Fterm Site hemocyanin domain Here, we showed that the C-terminal domain of hemocyanin (HMC) from shrimp Litopenaeus vannamei contained an evolutionary conserved domain with highly variable genetic sequence, which is structurally homologous to immunoglobulin (Ig). 28659912 3 24 part_of contained 487:495 arg1 hemocyanin AND an evolutionary conserved domain hemocyanin domain Fterm Site hemocyanin domain Here, we showed that the C-terminal domain of hemocyanin (HMC) from shrimp Litopenaeus vannamei contained an evolutionary conserved domain with highly variable genetic sequence, which is structurally homologous to immunoglobulin (Ig). 27893856 6 3 part_of extensin 1050:1057 arg1 an extensin epitope extensin an extensin epitope PUBTATOR Site extensin 100833457 epitope We revealed that the characteristic cell wall components of Brachypodium embryogenic calli are AGP epitopes that are recognised by the JIM16 and LM2 antibodies, an extensin epitope that is recognised by the JIM11 antibody and a pectic epitopes that is recognised by the LM6 antibody. 25943094 1 1 part_of TGF-β1 270:275 arg1 BMP-2 or TGF-β1 affinity binding peptides TGF-β1 BMP-2 or TGF-β1 affinity binding peptides PUBTATOR Site TGF-β1 7040 peptides BMP-2 and TGF-β1 released from injectable thermoresponsive hydrogels are studied in the presence and absence of branched macromolecules bearing BMP-2 or TGF-β1 affinity binding peptides. 25943094 1 36 part_of BMP-2 261:265 arg1 BMP-2 or TGF-β1 affinity binding peptides BMP-2 BMP-2 or TGF-β1 affinity binding peptides PUBTATOR Site BMP-2 650 peptides BMP-2 and TGF-β1 released from injectable thermoresponsive hydrogels are studied in the presence and absence of branched macromolecules bearing BMP-2 or TGF-β1 affinity binding peptides. 27287166 3 74 gly used 576:579 arg2 a new electrocatalytical nanocomposite a new electrocatalytical nanocomposite nanocomposite β-CD-GQD modified GCE was used as a new electrocatalytical nanocomposite towards electrooxidation of Vitamin C (as sample analyte). 28723345 8 55 gly used 1238:1241 arg2 immobilized α-Glu immobilized α-Glu Glu Finally, immobilized α-Glu was used to screen enzyme inhibitors from the extracts of TCMs and vegetables. 26194765 1 15 gly N-glycosylation 215:229 arg2 N-glycosylation sites N-glycosylation sites sites The vast majority of cases of follicular lymphoma (FL), but not normal B cells, acquire N-glycosylation sites in the immunoglobulin variable regions during somatic hypermutation. 29376970 0 38 part_of cyclodextrin-containing 76:98 arg1 the cyclodextrin-containing phytotherapeutic composition cyclodextrin the cyclodextrin-containing phytotherapeutic composition Fterm Site cyclodextrin position [The experimental evaluation of the protective effect of the extract of the cyclodextrin-containing phytotherapeutic composition on the development of osteoporosis]. 29033318 3 6 gly fucosylated 462:472 arg1 fucosylated glycans fucosylated glycans Here, we focus on a fucose analog with an alkyne group, 6-alkynyl-fucose (6-Alk-Fuc), which is used widely as a detection probe for fucosylated glycans, but is also suggested for use as a fucosylation inhibitor. 29306809 1 124 part_of protein 258:264 arg1 the protein, lipid and glycogen composition protein the protein, lipid and glycogen composition Fterm Site protein position Near infrared spectroscopy (NIRS) quantitative modelling was used to measure the protein, lipid and glycogen composition of five marine bivalve species (Saccostrea glomerata, Ostrea angasi, Crassostrea gigas, Mytilus galloprovincialis and Anadara trapezia) from multiple locations and seasons. 26070414 6 18 gly composition 879:889 arg1 the most important determinant position the most important determinant position Our results suggest that the most important determinant of microbiome composition is body compartment; communities derived from ileum are distinct from those from cecum and colon as observed by phylogenetic clustering analysis.