doc_id	sent_index	relation_id	relation	trigger	trigger_offset	arg_num	arg_base_np	arg_protein	arg_domain	arg_site	arg_sugar	PSource	SiteSource	NProtein	NID	SiteName	sent_text
26223829	7	55	part_of	protein-rich	1504:1515	arg1	protein-rich domains	protein		protein-rich domains		Fterm	Site	protein		domains	An increase in the turbidity of the solution of the resultant complexes indicates the formation of large-scale interpolymer associations of the primary complexes mediated by protein-rich domains.
27939510	0	42	gly	residue	86:92	arg1	polysaccharides			residue	polysaccharides					residue	Purification, antitumor and immunomodulatory activity of polysaccharides from soybean residue fermented with Morchella esculenta.
27998108	8	3	part_of	[CEL+KER+AgClNPs	1654:1669	arg1	the [CEL+KER+AgClNPs] composite	CEL		the [CEL+KER+AgClNPs] composite		OGER	Site	CEL	P19835	composite	More importantly, for the same bacteria and the same silver content, the [CEL+KER+AgClNPs] composite is relatively more toxic than [CEL+KER+Ag0NPs] composite.
29032210	0	4	gly	composition	9:19	arg1	lipopolysaccharide-stimulated RAW264.7 macrophage			position	lipopolysaccharide-stimulated RAW264.7 macrophage					position	Chemical composition of Cyclocarya paliurus polysaccharide and inflammatory effects in lipopolysaccharide-stimulated RAW264.7 macrophage.
24997793	11	25	part_of	lignin	2093:2098	arg1	lignin deposition	lignin		lignin deposition		Fterm	Site	lignin		position,	These data indicate that whereas PcGCE expression in hybrid aspen increases lignin deposition, the inhibitory effects of lignin are efficiently removed during acid pretreatment, and the extent of wood cellulose conversion during hydrolysis after acid pretreatment is improved in the transgenic lines possible due to reduced cell wall cross-links between cell wall biopolymers by PcGCE.
27449907	7	89	gly	glycopeptide	1676:1687	arg2	engineered glycopeptide scaffolds			engineered glycopeptide scaffolds						glycopeptide	In this report, we describe engineered glycopeptide scaffolds from three different clades of HIV-1 that bind PG9 with high affinity when expressed in a wildtype cell line suitable for biopharmaceutical production.
26404269	4	37	part_of	PPy-CNC	700:706	arg1	the PPy-CNC nanocomposite	PPy		the PPy-CNC nanocomposite		OGER	Site	PPy	P01298	nanocomposite	The voltammetric results showed that the native structure and biocatalytic activity of GOx immobilized on the PPy-CNC nanocomposite remained and exhibited a high sensitivity (ca. 0.73 μA·mM(-1)), with a high dynamic response ranging from 1.0 to 20 mM glucose.
27270599	0	7	part_of	Impact	0:5	arg1	the fine composition	Impact		the fine composition		OGER	Site	Impact	Q9P2X3	position	Impact of sludge retention time on the fine composition of the microbial community and extracellular polymeric substances in a membrane bioreactor.
25124516	6	4	part_of	IgG	1020:1022	arg1	the Fc region	IgG		the Fc region		Cterm	Site	IgG		region	We purified N-linked glycans from the Fc region of total IgG from Wuchereria bancrofti-infected patients characterizing the two clinical manifestations (chronic pathology and asymptomatic infection) and compared them to infection-free endemic normals.
26306633	7	2	gly	fucosylated	1212:1222	arg1	fucosylated structures				fucosylated structures						N-Glycoprotein analysis of B. mori fifth instar larvae revealed that high-mannose-type structure was predominant and GlcNAc-linked and fucosylated structures were observed but endogenous galactosyl-, N-acetylgalactosaminyl- and sialyl-N-glycoproteins were undetectable under the standard analytical approach.
26306633	7	4	gly	sialyl-N-glycoproteins	1305:1326	arg1	sialyl-N-glycoproteins	sialyl-N-glycoproteins				Fterm		sialyl-N-glycoproteins			N-Glycoprotein analysis of B. mori fifth instar larvae revealed that high-mannose-type structure was predominant and GlcNAc-linked and fucosylated structures were observed but endogenous galactosyl-, N-acetylgalactosaminyl- and sialyl-N-glycoproteins were undetectable under the standard analytical approach.
27524274	1	36	part_of	pectin	214:219	arg1	chemical composition	pectin		chemical composition		Fterm	Site	pectin		position	A central composite design was employed to determine the influence of extraction conditions on production yield and chemical composition of pectin from pomegranate peels.
25965497	7	34	part_of	PPMA/CNC	1021:1028	arg1	PPMA/CNC nanocomposite	CNC		PPMA/CNC nanocomposite		OGER	Site	CNC	P32418	nanocomposite	The addition of NDC increased the storage modulus (11%) compared to neat PMMA at room temperature while the storage modulus of PPMA/CNC nanocomposite containing 0.25 and 0.5 wt% cellulose increased about 46% and 260% to that of the pure PMMA at the glass transition temperature, respectively.
27508003	5	115	gly	proteins	961:968	arg1	the glucose, xylan and SCB substrates	proteins			the glucose, xylan and SCB substrates	Fterm		proteins			A total of 265 proteins were identified, with 153, 210 and 182 proteins in the glucose, xylan and SCB substrates, respectively.
28950170	5	41	part_of	[CEL+KER	771:778	arg1	Encapsulating Au0NPs into [CEL+KER] composite	CEL		Encapsulating Au0NPs into [CEL+KER] composite		OGER	Site	CEL	P19835	composite	Encapsulating Au0NPs into [CEL+KER] composite made the composite fully biocompatible and their bactericidal capabilities were increased by the antibacterial activity of Au0NPs.
25336511	1	55	gly	used	300:303	arg2	Biostable fiber-reinforced composites			Biostable fiber-reinforced composites						composites	Biostable fiber-reinforced composites, based on bisphenol-A-dimethacrylate and triethyleneglycoldimethacrylate thermoset polymer matrix reinforced with E-glass fibers have been successfully used in cranial reconstructions and the material has been approved for clinical use.
28989689	5	6	part_of	sites	993:997	arg1	PrP	PrP		sites		OGER	Site	PrP	Q9NP58	sites	Incorporating PEG at glycosylation sites 181 and 197 in PrP induced only small changes to the secondary structure when compared to unmodified, wildtype PrP.
28989689	5	6	part_of	sites	993:997	arg1	Incorporating PEG	Incorporating PEG		sites		OGER	Site	Incorporating PEG	P09466	sites	Incorporating PEG at glycosylation sites 181 and 197 in PrP induced only small changes to the secondary structure when compared to unmodified, wildtype PrP.
29239606	4	27	part_of	β-glucosidase	1298:1310	arg1	the amino acid residues	β-glucosidase		residues		Fterm	Site	β-glucosidase		residues	The further ITC and docking simulations suggested the bindings of MEL-A toward β-glucosidase were driven by weak hydrophobic interactions happened between the amino acid residues of β-glucosidase and the fatty acid residues of MEL-A, in addition to hydrogen bonds between amino acids and hydroxyl in glycosyl residues of this biosurfactant.
29239606	4	58	part_of	MEL-A	1343:1347	arg1	the amino acid residues	MEL		residues		OGER	Site	MEL	P61006	residues	The further ITC and docking simulations suggested the bindings of MEL-A toward β-glucosidase were driven by weak hydrophobic interactions happened between the amino acid residues of β-glucosidase and the fatty acid residues of MEL-A, in addition to hydrogen bonds between amino acids and hydroxyl in glycosyl residues of this biosurfactant.
25629585	0	87	gly	glycoprotein	29:40	arg1	an automated N-linked glycoprotein identification tool	an automated N-linked glycoprotein identification tool				Fterm		glycoprotein			MAGIC: an automated N-linked glycoprotein identification tool using a Y1-ion pattern matching algorithm and in silico MS² approach.
26088135	8	40	part_of	gp140	940:944	arg1	The C terminus	gp140		The C terminus		Cterm	Site	gp140		terminus	The C terminus of gp140 was attached to Strep-tag II with a long linker separating the tag from the massive trimer base and glycan shield.
27688023	6	1	gly	found	827:831	arg2	the active sites AND glucose and lactose molecules			the active sites	glucose and lactose molecules					sites	Because glucose and lactose molecules are found at the active sites in both structures, it is possible that these structures mimic the enzyme-product complex of YgjK.
25439870	6	26	part_of	PULL/PVA/MMT	1327:1338	arg1	the PULL/PVA/MMT composite	PULL/PVA		the PULL/PVA/MMT composite		OGER	Site	PULL/PVA	P32926	composite	Overall, the addition of MMT resulted in improved thermal stability and mechanical properties and increased the water absorbency of the PULL/PVA/MMT composite.
24114597	9	11	part_of	enzymes	1467:1473	arg1	EPS monomeric composition	enzymes		EPS monomeric composition		Fterm	Site	enzymes		position	CONCLUSION The influence of different CH (<3 kDa) on LAB viability, EPS production, EPS monomeric composition and activity levels of key metabolic enzymes was distinct.
28640663	6	9	gly	mannosylated	1123:1134	arg1	high mannosylated glycans				high mannosylated glycans						Compared with Remicade®, Flixabi® had a lower percentage of charged glycan, and Remsima® had a higher percentage of galactosylated glycan and a lower percentage of afucose plus high mannosylated glycans.
28698076	9	4	part_of	CPN3	1173:1176	arg1	the CPN3% composite	CPN3		the CPN3% composite		PUBTATOR	Site	CPN3	70568	composite	The results have shown the CPN3% composite shows a high level of antibacterial property when compared to the other composites.
28356486	1	28	gly	leucine-rich	374:385	arg1	the small leucine-rich proteoglycans			leucine	the small leucine-rich proteoglycans					leucine	In a recent publication in Bioscience Reports "Contaminants in commercial preparations of 'purified' small leucine-rich proteoglycans may distort mechanistic studies", Brown et al. identified by mass spectrometry and immunoblotting that certain commercial preparations of the small leucine-rich proteoglycans (SLRPs) decorin and biglycan, in fact, contained a mix of several proteoglycans that also included fibromodulin and aggrecan.
28356486	1	39	gly	leucine-rich	199:210	arg1	' small leucine-rich proteoglycans			leucine	' small leucine-rich proteoglycans					leucine	In a recent publication in Bioscience Reports "Contaminants in commercial preparations of 'purified' small leucine-rich proteoglycans may distort mechanistic studies", Brown et al. identified by mass spectrometry and immunoblotting that certain commercial preparations of the small leucine-rich proteoglycans (SLRPs) decorin and biglycan, in fact, contained a mix of several proteoglycans that also included fibromodulin and aggrecan.
27449907	1	78	gly	epitopes	207:214	arg1	an epitope			an epitope						epitope	The V1/V2 domain of the HIV-1 envelope protein gp120 possesses two important epitopes: a glycan-dependent epitope recognized by the prototypic broadly neutralizing monoclonal antibody (bN-mAb), PG9, as well as an epitope recognized by non-neutralizing antibodies that has been associated with protection from HIV infection in the RV144 HIV vaccine trial.
27449907	1	118	gly	possesses	183:191	arg1	The V1/V2 domain AND a glycan-dependent epitope			The V1/V2 domain	a glycan-dependent epitope					domain	The V1/V2 domain of the HIV-1 envelope protein gp120 possesses two important epitopes: a glycan-dependent epitope recognized by the prototypic broadly neutralizing monoclonal antibody (bN-mAb), PG9, as well as an epitope recognized by non-neutralizing antibodies that has been associated with protection from HIV infection in the RV144 HIV vaccine trial.
24842272	1	65	gly	O-glycosylated	142:155	arg1	highly O-glycosylated proteins	highly O-glycosylated proteins				Fterm		proteins			Mucins are a class of highly O-glycosylated proteins found on the surface of cells in epithelial tissues.
27302279	4	18	gly	fucosylated	479:489	arg1	fucosylated IgG glycan structures				fucosylated IgG glycan structures						Decreased galactosylation, decreased sialylation (of fucosylated IgG glycan structures) and increased bisecting GlcNAc in IgG glycan structures were strongly associated with all-cause (q < 0.01) and CRC mortality (q = 0.04 for galactosylation and sialylation).
27302279	4	46	gly	sialylation	463:473	arg1	fucosylated IgG glycan structures				fucosylated IgG glycan structures						Decreased galactosylation, decreased sialylation (of fucosylated IgG glycan structures) and increased bisecting GlcNAc in IgG glycan structures were strongly associated with all-cause (q < 0.01) and CRC mortality (q = 0.04 for galactosylation and sialylation).
27302279	4	46	gly	sialylation	463:473	arg1	IgG glycan structures				IgG glycan structures						Decreased galactosylation, decreased sialylation (of fucosylated IgG glycan structures) and increased bisecting GlcNAc in IgG glycan structures were strongly associated with all-cause (q < 0.01) and CRC mortality (q = 0.04 for galactosylation and sialylation).
27261756	1	51	part_of	Chitosan/PVA/Na-titanate/TiO2	142:170	arg1	Chitosan/PVA/Na-titanate/TiO2 composite	PVA		Chitosan/PVA/Na-titanate/TiO2 composite		OGER	Site	PVA	P32926	composite	Chitosan/PVA/Na-titanate/TiO2 composite was synthesized by solution casting method.
24299772	6	31	gly	residues	1092:1099	arg1	mannose-glucose isomerisation			residues at	mannose-glucose isomerisation					residues at	Depolymerisation and formation of anhydrohexose residues at the reducing end and mannose-glucose isomerisation were also observed.
27508003	0	111	gly	glycosylation	17:29	arg1	carbohydrate-active enzymes				carbohydrate-active enzymes						Mapping N-linked glycosylation of carbohydrate-active enzymes in the secretome of Aspergillus nidulans grown on lignocellulose.
28962782	4	58	part_of	CTR	845:847	arg1	1% (w/v) CTR composition	CTR		1% (w/v) CTR composition		OGER	Site	CTR	P30988	position	SEM images and solubility experiments demonstrated that most favorable result was obtained from the 10% (w/v) CA, 5% (w/v) BA-a and 1% (w/v) CTR composition and cross-linked nanofibrous membrane (CA10/PolyBA-a5/CTR1) was obtained after the thermal curing.
27508003	11	78	gly	released	1615:1622	arg1	the proteins AND N-glycans	the proteins			N-glycans	Fterm		proteins			A global analysis of N-glycans released from the proteins secreted by A. nidulans was also performed.
28258007	2	16	gly	utilized	402:409	arg2	chitosan supported bentonite (CSBent) composites			chitosan supported bentonite (CSBent) composites						composites	To improve the properties of bentonite (bent) and chitosan (CS), chitosan supported bentonite (CSBent) composites were prepared and utilized for phosphate removal.
26721884	12	92	gly	N-glycosylation	1658:1672	arg2	NKCC2 N-glycosylation sites			NKCC2 N-glycosylation sites						sites	In contrast, mutations of NKCC2 N-glycosylation sites abolished the effects of OS9, indicating that OS9-induced protein degradation is N-glycan-dependent.
27455764	4	8	part_of	HAp	804:806	arg1	HAp deposition	HAp		HAp deposition		OGER	Site	HAp	Q15424	position	Gellan gum was chosen as the polysaccharide for coating because of its biodegradability as well as the potential acting as substrate for HAp deposition during hydration of α-TCP after exposure to body fluid.
27770231	1	59	part_of	synthase	160:167	arg1	Starch binding domains	synthase		Starch binding domains		Fterm	Site	synthase		domains	Starch binding domains of starch synthase III from Arabidopsis thaliana (SBD123) binds preferentially to cell wall polysaccharides rather than to starch in vitro.
27185147	4	30	gly	used	769:772	arg2	the ZnO-deposited BC composites			the ZnO-deposited BC composites						composites	Hence, the ZnO-deposited BC composites can be used as an antibacterial material in wound dressing and water disinfection applications.
25390070	4	86	part_of	CNC/poly	820:827	arg1	variously oriented CNC/poly(2-hydroxyethyl methacrylate) composites	CNC		variously oriented CNC/poly(2-hydroxyethyl methacrylate) composites		OGER	Site	CNC	P32418	composites	UV-induced polymerization of HEMA perpetuated the respective states of magnetic orientation invested for the CNC dispersions to yield variously oriented CNC/poly(2-hydroxyethyl methacrylate) composites.
25129633	5	46	part_of	pectin	616:621	arg1	pectin composition	pectin		pectin composition		Fterm	Site	pectin		position	This study examines the ultrastructure and pectin composition of guard cell walls during development in Funaria hygrometrica and relates these features to the limited movement of stomata.
24174266	2	24	gly	de-N-glycosylated	968:984	arg1	de-N-glycosylated peptides			de-N-glycosylated peptides						peptides	An efficient method to separate these two classes of N-glycans would significantly aid in detecting the lower abundant components by MS. Capitalizing on an initial observation that only high mannose type structures were recovered in the flow-through fraction when peptide-N-glycosidase F digested peptides were passed through a C18 cartridge in 0.1% formic acid, we demonstrated here that native complex type N-glycans can be retained by C18 cartridge and to be efficiently separated from both the smaller high mannose type structures, as well as de-N-glycosylated peptides by stepwise elution with increasing ACN concentration.
28953376	4	76	gly	intraglycopeptide	858:874	arg2	favorable intraglycopeptide enthalpy			favorable intraglycopeptide enthalpy						intraglycopeptide	A combination of sterics and favorable intraglycopeptide enthalpy explains the existence of only these two conformations.
25928444	7	68	part_of	strain	934:939	arg1	two distinct domains	strain		two distinct domains		Fterm	Site	strain		domains	As a function of strain, two distinct domains, both showing linear relationships, were observed for which an average initial shift rate with respect to strain of -0.63 ± 0.2 cm(-1)%(-1) was observed, followed by an average shift rate of -0.25 ± 0.03 cm(-1)%(-1).
25629585	9	93	gly	glycoproteins	1735:1747	arg1	26 glycoproteins	26 glycoproteins				Fterm		glycoproteins			In the HeLa cell proteome data set, MAGIC processed over a thousand MS(2) spectra in 3 min on a PC and reported 36 glycopeptides from 26 glycoproteins.
25629585	9	46	gly	glycopeptides	1713:1725	arg1	26 glycoproteins	glycoproteins		glycopeptides		Fterm		glycoproteins		glycopeptides	In the HeLa cell proteome data set, MAGIC processed over a thousand MS(2) spectra in 3 min on a PC and reported 36 glycopeptides from 26 glycoproteins.
28950170	8	25	part_of	[CEL+KER+Au0NPs	1486:1500	arg1	the [CEL+KER+Au0NPs] composites	CEL		the [CEL+KER+Au0NPs] composites		OGER	Site	CEL	P19835	composites	These results together with our previous finding that [CEL+KER] composites can be used for controlled delivery of drugs clearly indicate that the [CEL+KER+Au0NPs] composites possess all required properties for successful use as dressing to treat chronic ulcerous infected wounds.
28950170	8	56	part_of	[CEL+KER	1394:1401	arg1	[CEL+KER] composites	CEL		[CEL+KER] composites		OGER	Site	CEL	P19835	composites	These results together with our previous finding that [CEL+KER] composites can be used for controlled delivery of drugs clearly indicate that the [CEL+KER+Au0NPs] composites possess all required properties for successful use as dressing to treat chronic ulcerous infected wounds.
25844452	2	47	gly	composition	368:378	arg1	the lipopolysaccharides			position,	the lipopolysaccharides					position,	In the lipid A fatty acid composition, the lipopolysaccharides under study were similar to those of other Azospirillum strains and were characterized by predominance of 3-hydroxytetradecanoic, 3-hydroxyhexadecanoic, and octadecenoic acids.
28068519	0	46	part_of	heparin	62:68	arg1	quantitative composition	heparin		quantitative composition		Fterm	Site	heparin		position	Qualification of HSQC methods for quantitative composition of heparin and low molecular weight heparins.
26876864	4	10	part_of	PBS/PLA/PBS-g-CNC	843:859	arg1	PBS/PLA/PBS-g-CNC composites	CNC		PBS/PLA/PBS-g-CNC composites		OGER	Site	CNC	P32418	composites	The crystallinity of PLA α'-phase crystal in PBS/PLA/PBS-g-CNC composites is increased obviously by the addition of PBS-g-CNC, leading to an increase of the crystallinity of the composites.
27599938	4	23	part_of	lysine	776:781	arg1	the protein	protein		lysine		Fterm	AminoAcid	protein		leucine, serine and lysine	cpsG, a putative UDP-galactose 4-epimerase, has three sequence types based on the insertion or deletion of the three amino acids leucine, serine and lysine in the substrate binding site of the protein.
27599938	4	26	part_of	serine	765:770	arg1	the protein	protein		serine		Fterm	AminoAcid	protein		leucine, serine and lysine	cpsG, a putative UDP-galactose 4-epimerase, has three sequence types based on the insertion or deletion of the three amino acids leucine, serine and lysine in the substrate binding site of the protein.
27599938	4	38	part_of	protein	820:826	arg1	the substrate binding site	protein		the substrate binding site		Fterm	Site	protein		site	cpsG, a putative UDP-galactose 4-epimerase, has three sequence types based on the insertion or deletion of the three amino acids leucine, serine and lysine in the substrate binding site of the protein.
25629585	5	113	part_of	N-linked	974:981	arg1	N-linked glycopeptides	N-linked		N-linked glycopeptides		Cterm	Site	N-linked		glycopeptides	To ensure accurate Y1-ion assignment, we propose a novel algorithm called Trident that detects a triplet pattern corresponding to [Y0, Y1, Y2] or [Y0-NH3, Y0, Y1] from the fragmentation of the common trimannosyl core of N-linked glycopeptides.
25157382	0	12	gly	resistance	125:134	arg1	Chemical composition			Chemical composition	Chemical composition		Site			position	Chemical composition of Pleurotus eryngii polysaccharides and their inhibitory effects on high-fructose diet-induced insulin resistance and oxidative stress in mice.
25157382	0	68	gly	composition	9:19	arg1	high-fructose diet-induced insulin resistance			position	high-fructose diet-induced insulin resistance					position	Chemical composition of Pleurotus eryngii polysaccharides and their inhibitory effects on high-fructose diet-induced insulin resistance and oxidative stress in mice.
25701653	8	38	part_of	enoxaparin	1353:1362	arg1	94 enoxaparin fragments	enoxaparin		94 enoxaparin fragments		Fterm	Site	enoxaparin		fragments	And a total of 94 enoxaparin fragments and 109 nadroparin fragments were detected and identified.
25701653	8	46	part_of	nadroparin	1382:1391	arg1	109 nadroparin fragments	nadroparin		109 nadroparin fragments		Fterm	Site	nadroparin		fragments	And a total of 94 enoxaparin fragments and 109 nadroparin fragments were detected and identified.
27423880	3	33	part_of	origin	567:572	arg1	chemical composition	origin		chemical composition		Fterm	Site	origin		position	Here we determined for the first time the chemical composition and structure of serotype 9 capsular polysaccharide (CPS), a major bacterial virulence factor and the antigen at the origin of S. suis classification into serotypes.
28117421	2	51	gly	sugars	596:601	arg1	its composition			its composition	its composition		Site			position	Mycelia from two types of edible, medicinal fungi, Ganoderma lucidum and Pleurotus ostreatus, have been carefully cultivated, being fed by two bio-substrates: cellulose and cellulose/potato-dextrose, the second being easier to digest by mycelium due to presence of simple sugars in its composition.
27522435	12	20	part_of	OS	1981:1982	arg1	milk OS composition	milk OS		milk OS composition		PUBTATOR	Site	milk OS	100532204	position	The similarity of both intestinal physiopathology and milk OS composition in human and porcine species suggests similar effects on gastrointestinal development of early nutrition, reinforcing the use of the pig intestinal model to simulate human intestinal models in the clinical setting.
27522435	12	67	part_of	milk	1976:1979	arg1	milk OS composition	milk OS		milk OS composition		PUBTATOR	Site	milk OS	100532204	position	The similarity of both intestinal physiopathology and milk OS composition in human and porcine species suggests similar effects on gastrointestinal development of early nutrition, reinforcing the use of the pig intestinal model to simulate human intestinal models in the clinical setting.
28950170	6	50	part_of	[CEL+KER+Au0NPs	940:954	arg1	the [CEL+KER+Au0NPs] composite	CEL		the [CEL+KER+Au0NPs] composite		OGER	Site	CEL	P19835	composite	Specifically, the [CEL+KER+Au0NPs] composite exhibited up to 97% and 98% reduction in growth of antibiotic resistant bacteria such as vancomycin resistant Enterococcus faecalis and methicillin resistant Staphylococcus aureus, and was not cytotoxic to human fibroblasts.
25263889	4	39	part_of	PPy/KC	487:492	arg1	The PPy/KC nano-bio composites	PPy		The PPy/KC nano-bio composites		OGER	Site	PPy	P01298	composites	The PPy/KC nano-bio composites were then studied as an electrode material, due to their oxygen reduction reaction (ORR) ability as the cathode catalyst in the MFC and the results were compared with platinum (Pt) as the most common cathode catalyst.
26063800	4	1	part_of	contain	856:862	arg1	cCpG-II AND two binding sites	cCpG-II		two binding sites		OGER	Site	cCpG	Q96EK7	sites	Using luciferase reporter assays, site-directed mutagenesis, ChIP assays, and mithramycin A treatment, we identified the core promoters within cCpG-II and tCpG, which contain two binding sites for Krüppel-like transcription factors, including SP1/SP3, respectively.
24998774	6	45	part_of	CHS/PCL	1241:1247	arg1	conventionally used CHS/PCL composites	CHS		conventionally used CHS/PCL composites		OGER	Site	CHS	Q99698	composites	These characterizations revealed a composite that combines the versatile properties of CHS-g-PCL with the osteogenic activity of the silicatein/biosilica coating and, hence, represents an innovative alternative to conventionally used CHS/PCL composites for biomedical applications, where stable bone-material interfaces are required.
27770231	9	32	part_of	synthase	1268:1275	arg1	the starch-binding domains	synthase		the starch-binding domains		Fterm	Site	synthase		domains	In this study, we modified the cell wall of A. thaliana by targeting the starch-binding domains of A. thaliana starch synthase III to this structure.
28640663	12	34	gly	afucosylated	1762:1773	arg1	afucosylated and high mannosylated glycans				afucosylated and high mannosylated glycans						Combined percentages of afucosylated and high mannosylated glycans were positively correlated with FcγRIIIa binding and ADCC in NK92-CD16 cells, while no correlation was observed in PBMC.
28640663	12	80	gly	mannosylated	1784:1795	arg1	afucosylated and high mannosylated glycans				afucosylated and high mannosylated glycans						Combined percentages of afucosylated and high mannosylated glycans were positively correlated with FcγRIIIa binding and ADCC in NK92-CD16 cells, while no correlation was observed in PBMC.
28640663	4	6	gly	mannosylated	648:659	arg1	high mannosylated glycans				high mannosylated glycans						We assessed binding to tumor necrosis factor in a fluorescence competitive binding assay; potency in a luciferase reporter gene assay; percentages of galactosylated glycan, afucose plus high mannosylated glycans, and charged glycan; FcγRIIIa (CD16) binding (assessed by 3 methods); and antibody-dependent cell-mediated cytotoxicity (ADCC) in the NK92-CD16a cell line and in peripheral blood mononuclear cells (PBMC).
26871442	3	43	gly	N-glycosylation	511:525	arg2	N-glycosylation site deletions			N-glycosylation site deletions						site	In the case of HIV, it has been shown that CBAs select for mutant viruses with N-glycosylation site deletions which are more sensitive to neutralizing antibodies.
28091940	7	35	gly	sequence	1547:1554	arg1	unique disaccharides or oligosaccharides sequence composition				unique disaccharides or oligosaccharides sequence composition						Understanding CS and DS structure derived from different origins may lead to the production of CS or DS with unique disaccharides or oligosaccharides sequence composition and biological functions.
28989689	5	4	gly	glycosylation	979:991	arg2	glycosylation sites 181 and 197			glycosylation sites 181 and 197						sites	Incorporating PEG at glycosylation sites 181 and 197 in PrP induced only small changes to the secondary structure when compared to unmodified, wildtype PrP.
28953376	8	33	gly	glycoproteins	1641:1653	arg1	stable α-helical glycoproteins	stable α-helical glycoproteins				Fterm		glycoproteins			Thus, we suggest that incorporating a Glu at either the -4 or +4 position relative to an N-linked glycan may be a useful strategy for engineering stable α-helical glycoproteins.
26721884	4	25	part_of	NKCC2	693:697	arg1	NKCC2 C terminus	NKCC2 C		NKCC2 C terminus		PUBTATOR	Site	NKCC2 C	6557	terminus	To this end, we screened a kidney cDNA library through a yeast two-hybrid assay using NKCC2 C terminus as bait.
26721884	4	68	part_of	C	699:699	arg1	NKCC2 C terminus	NKCC2 C		NKCC2 C terminus		PUBTATOR	Site	NKCC2 C	6557	terminus	To this end, we screened a kidney cDNA library through a yeast two-hybrid assay using NKCC2 C terminus as bait.
24274482	6	32	part_of	CIP-agar	1147:1154	arg1	CIP-agar composites	CIP		CIP-agar composites		OGER	Site	CIP	Q5VWP3	composites	Agar served as a perfect matrix to be used with CIP, and CIP-agar composites magnetically aligned at 20% CIP concentration can be considered as promising 'smart' material for hyperthermia treatments in the biomedical field.
24737672	7	36	gly	glycoproteins	1519:1531	arg1	misfolded glycoproteins	misfolded glycoproteins				Fterm		glycoproteins			Thus, MNS4 and MNS5 function in the formation of unique N-glycan structures that are specifically recognized by other components of the ERAD machinery, which ultimately results in the disposal of misfolded glycoproteins.
24274482	3	48	part_of	CIP-agar	486:493	arg1	the CIP-agar composites	CIP		the CIP-agar composites		OGER	Site	CIP	Q5VWP3	composites	Heat transfer behavior of the CIP-agar composites containing different concentrations (5, 10, 15, 20, 25 and 30% w/w) of magnetically aligned and non-aligned CIP in the agar matrix was studied using photothermal radiometry (PTR) in the back-propagation emission configuration.
28744842	5	87	part_of	IVD	1175:1177	arg1	composition	IVD		composition		OGER	Site	IVD	Q9JHI5	position	In this work, we demonstrate utility of this approach to monitor the longitudinal changes of in vitro nucleolytic- and mechanical injury- degeneration models of the murine discs and introduce novel quantitative metrics to characterize the structure and composition of the IVD.
27667544	0	24	part_of	chitin-binding	4:17	arg1	The chitin-binding domain	chitin		The chitin-binding domain		Fterm	Site	chitin		domain	The chitin-binding domain of a GH-18 chitinase from Vibrio harveyi is crucial for chitin-chitinase interactions.
27667544	0	50	part_of	chitinase	37:45	arg1	The chitin-binding domain	chitinase		The chitin-binding domain		Fterm	Site	chitinase		domain	The chitin-binding domain of a GH-18 chitinase from Vibrio harveyi is crucial for chitin-chitinase interactions.
28290299	2	25	part_of	protein	557:563	arg1	protein composition	protein		protein composition		Fterm	Site	protein		position	Their nutritional and antinutritional compositions, functional properties, microstructure, thermal properties, in vitro protein and starch digestibility, and protein composition were studied.
28953376	2	1	gly	interactions	498:509	arg1	α-helical glycosylation sites			α-helical glycosylation sites	α-helical glycosylation sites		Site			sites	To further elucidate the effects of N-glycosylation on protein structure and to provide principles useful for the rational design of α-helical glycopeptides, we investigate stabilizing protein-sugar interactions in α-helical glycosylation sites using an integrated structural bioinformatics analysis and molecular dynamics simulation approach.
28953376	2	16	gly	glycopeptides	442:454	arg2	α-helical glycopeptides			α-helical glycopeptides						glycopeptides	To further elucidate the effects of N-glycosylation on protein structure and to provide principles useful for the rational design of α-helical glycopeptides, we investigate stabilizing protein-sugar interactions in α-helical glycosylation sites using an integrated structural bioinformatics analysis and molecular dynamics simulation approach.
28953376	2	70	gly	glycosylation	524:536	arg2	α-helical glycosylation sites			α-helical glycosylation sites						sites	To further elucidate the effects of N-glycosylation on protein structure and to provide principles useful for the rational design of α-helical glycopeptides, we investigate stabilizing protein-sugar interactions in α-helical glycosylation sites using an integrated structural bioinformatics analysis and molecular dynamics simulation approach.
28953376	2	84	gly	N-glycosylation	335:349	arg1	protein structure	protein structure				Fterm		protein			To further elucidate the effects of N-glycosylation on protein structure and to provide principles useful for the rational design of α-helical glycopeptides, we investigate stabilizing protein-sugar interactions in α-helical glycosylation sites using an integrated structural bioinformatics analysis and molecular dynamics simulation approach.
26280087	4	12	gly	glycopeptides	832:844	arg2	N-linked glycopeptides			N-linked glycopeptides						glycopeptides	We also report for the first time natural HLA class I presentation of O- and N-linked glycopeptides derived from membrane proteins.
24274499	0	26	part_of	lysozyme-layered	55:70	arg1	lysozyme-layered silicate composites	lysozyme		lysozyme-layered silicate composites		PUBTATOR	Site	lysozyme	4069	composites	Antibacterial activity of nanofibrous mats coated with lysozyme-layered silicate composites via electrospraying.
27760230	1	5	gly	Strain	69:74	arg1	Different Extracellular Polysaccharide Content	Strain			Different Extracellular Polysaccharide Content	Fterm		Strain			trifolii Strain 24.2 and Its Derivatives with Different Extracellular Polysaccharide Content.
28246387	7	54	part_of	factors	1363:1369	arg1	the promoter regions	factors		the promoter regions		Fterm	Site	factors		regions	Furthermore, PsnSHN2 activated or repressed the promoter activities of transcription factors involved in secondary wall biosynthesis and bound to five cis-acting elements enriched in the promoter regions of these transcription factors.
29296958	7	71	gly	O-glycosites	1477:1488	arg2	O-glycosites			O-glycosites						O-glycosites	The importance of O-glycosites in proximity to proteolytic cleavage sites was further supported by in vitro peptide assays demonstrating that proteolysis of key hemostatic proteins can be inhibited by the presence of O-glycans.
24331712	7	22	part_of	MCS	1648:1650	arg1	the MCS composites	MCS		the MCS composites		OGER	Site	MCS	Q96EN8	composites	The choice of hydrogel also influenced the cell response, with significantly higher viability and adipogenic differentiation observed in the MCS composites containing 5 wt% DAT.
26249574	4	52	part_of	gelatin	709:715	arg1	gelatin composites	gelatin		gelatin composites		Fterm	Site	gelatin		composites	Electrochemical impedance spectroscopy analysis revealed gelatin composites in general to exhibit better immobilization performance relative to the native gelatin which can be attributed to enhanced film morphologies of the composite structures.
27667544	2	65	part_of	chitin-binding	407:420	arg1	the chitin-binding domain	chitin		the chitin-binding domain		Fterm	Site	chitin		domain	In this study, we cloned the gene fragment encoding the chitin-binding domain of VhChiA, termed ChBDVhChiA.
26296208	2	10	gly	glycoproteins	540:552	arg1	cell wall glycoproteins	cell wall glycoproteins				Fterm		glycoproteins			Enzymes in this family are localised to the Golgi apparatus, and have been shown to be involved in both N- and O-linked glycosylation of newly-synthesised proteins, including cell wall glycoproteins.
26296208	2	36	gly	glycosylation	475:487	arg1	newly-synthesised proteins	newly-synthesised proteins				Fterm		proteins			Enzymes in this family are localised to the Golgi apparatus, and have been shown to be involved in both N- and O-linked glycosylation of newly-synthesised proteins, including cell wall glycoproteins.
26296208	2	36	gly	glycosylation	475:487	arg1	cell wall glycoproteins	cell wall glycoproteins				Fterm		glycoproteins			Enzymes in this family are localised to the Golgi apparatus, and have been shown to be involved in both N- and O-linked glycosylation of newly-synthesised proteins, including cell wall glycoproteins.
26280087	3	49	part_of	HLA	530:532	arg1	an HLA peptide	HLA		an HLA peptide		OGER	Site	HLA		peptide	A cytosolic O-GlcNAc modification is normally terminal and does not extend to produce a polysaccharide, but O-GlcNAc on an HLA peptide presents a special case because the loaded HLA class I complex traffics through the endoplasmic reticulum and Golgi apparatus on its way to the cell membrane and is hence exposed to glycosyltransferases.
28549863	2	17	part_of	MCC	422:424	arg1	elemental composition	MCC		elemental composition		OGER	Site	MCC		position,	The physicochemical and morphological characteristics, elemental composition, size distribution, crystallinity and thermal properties of the obtained MCC were analyzed in this work.
25799882	6	11	part_of	Medium	689:694	arg1	Medium composition	Medium		Medium composition		OGER	Site	Medium		position	Medium composition and culture conditions for polysaccharide-based bioflocculants were statistically optimized by response surface methodology (RSM).
25965461	5	50	part_of	β-D-Galp	1117:1124	arg1	O-6 position	Galp		O-6 position		OGER	Site	Galp	Q9UBC7	position	The main chain of ABPS-21 was made up of → 4)-β-D-Galp-(1 → 4)-β-D-Glcp-(1 → 4)-β-D-Galp-(1 → 4)-β-D-Galp-(1 → 2)-α-L-Rhap-(1 →, and two side chains α-l-Rhap-(1 → 4)-β-D-Glcp-(1 → and α-D-galpA-(1 → were attached to the backbone chain at O-6 position of 1,4,6-linked β-D-Glcp and 1,4,6-linked β-D-Galp, respectively.
24415556	4	20	gly	glycoprotein	816:827	arg1	the glycoprotein folding process	the glycoprotein folding process				Fterm		glycoprotein			On the other hand, direct evidence to support the glucosyltransferase activity of UGGT2 has been lacking, leaving it unclear as to whether it has any function in the glycoprotein folding process.
25498203	4	26	gly	G3983	582:586	arg1	the lipopolysaccharides			G3983 and G3977	the lipopolysaccharides					G3983 and G3977	In this work, short-chain O-polysaccharides consisting on the average of 2-3 repeating units were obtained by mild acid or mild alkaline degradation of the lipopolysaccharides of C. dublinensis G3983 and G3977 and studied by composition analysis, Smith degradation, and (1)H and (13)C NMR spectroscopy.
25498203	4	34	gly	G3977	592:596	arg1	the lipopolysaccharides			G3983 and G3977	the lipopolysaccharides					G3983 and G3977	In this work, short-chain O-polysaccharides consisting on the average of 2-3 repeating units were obtained by mild acid or mild alkaline degradation of the lipopolysaccharides of C. dublinensis G3983 and G3977 and studied by composition analysis, Smith degradation, and (1)H and (13)C NMR spectroscopy.
24254641	3	49	gly	proteins	435:442	arg1	the urinary asparagine-linked glycan (N-glycan) profile	proteins			the urinary asparagine-linked glycan (N-glycan) profile	Fterm		proteins			We determined the urinary asparagine-linked glycan (N-glycan) profile of prostatic proteins of healthy volunteers (n = 25), patients with benign prostate hyperplasia (BPH; n = 62) and newly diagnosed PCa patients (n = 42) using DNA-sequencer-assisted fluorophore-assisted carbohydrate electrophoresis.
24254641	3	78	gly	asparagine-linked	378:394	arg1	the urinary asparagine-linked glycan (N-glycan) profile			asparagine	the urinary asparagine-linked glycan (N-glycan) profile					asparagine	We determined the urinary asparagine-linked glycan (N-glycan) profile of prostatic proteins of healthy volunteers (n = 25), patients with benign prostate hyperplasia (BPH; n = 62) and newly diagnosed PCa patients (n = 42) using DNA-sequencer-assisted fluorophore-assisted carbohydrate electrophoresis.
24737672	4	43	gly	glycosylated	784:795	arg1	the heavily glycosylated brassinosteroid receptor	the heavily glycosylated brassinosteroid receptor				Fterm		receptor			Our genetic and biochemical data show that the two ER-resident proteins MNS4 and MNS5 are involved in the degradation of misfolded variants of the heavily glycosylated brassinosteroid receptor, BRASSINOSTEROID INSENSITIVE1, while MNS1 to MNS3 appear dispensable for this ERAD process.
28698076	5	0	part_of	CPN	717:719	arg1	The CPN composites	CPN		The CPN composites		OGER	Site	CPN		composites	The CPN composites were characterized for physical properties like Thickness, Barrier properties and mechanical testing.
27062721	1	7	part_of	ATIII-binding	425:437	arg1	the ATIII-binding region	ATIII		the ATIII-binding region		PUBTATOR	Site	ATIII	462	region	Oligosaccharide mapping based on enzyme cleavage provides a useful molecular fingerprint of the heparin structure revealing detailed structural information regarding its sequence and the content of part of the ATIII-binding region.
25171516	1	16	gly	glycosylated	146:157	arg1	Proteoglycans	proteins			Proteoglycans	Fterm		proteins			Proteoglycans (PGs) are important glycosylated proteins found on the cell surface and in the extracellular matrix.
24842272	0	43	gly	glycopeptides	98:110	arg2	the corresponding glycopeptides			the corresponding glycopeptides						glycopeptides	A convergent strategy for the synthesis of type-1 elongated mucin cores 1-3 and the corresponding glycopeptides.
28797225	9	72	gly	isolated	1674:1681	arg1	the R strain AND the pellicle polysaccharide	the R strain			the pellicle polysaccharide	Fterm		strain			The R:ΔpolE mutant strain was not able to form a regular pellicle anymore, but secreted an EPS into the medium, which exhibited a similar sugar monomer composition as the pellicle polysaccharide isolated from the R strain.
28797225	9	72	gly	isolated	1674:1681	arg1	the R strain AND a similar sugar monomer composition	the R strain			a similar sugar monomer composition	Fterm		strain			The R:ΔpolE mutant strain was not able to form a regular pellicle anymore, but secreted an EPS into the medium, which exhibited a similar sugar monomer composition as the pellicle polysaccharide isolated from the R strain.
27508003	15	119	gly	glycoprotein	2393:2404	arg1	glycoprotein structures	glycoprotein structures				Fterm		glycoprotein			A comprehensive analysis of the protein glycosylation processes in A. nidulans will assist with a better understanding of glycoprotein structures, profiles, activities and functions.
25915761	4	43	gly	carry	603:607	arg1	H5N1 HA1 envelope proteins AND O-glycans	proteins		threonines	O-glycans	Fterm		proteins		threonines	Similarly-positioned, highly-conserved threonines in the influenza A virus H1N1 HA1 and H5N1 HA1 envelope proteins were also found to carry O-glycans when expressed as secreted proteins.
25915761	7	11	gly	O-glycosylation	1143:1157	arg1	the C-terminal threonine			the C-terminal threonine						threonine	In striking contrast to these findings, gp120 on purified virions of HIV-1 Bal and SIV CP-MAC lacked any detectable O-glycosylation of the C-terminal threonine.
24740695	4	4	gly	glycoproteins	712:724	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			In addition, AaP-1, AaP-2, AaP-3, and AaP-4 were found to be glycoproteins, containing 21.75, 22.27, 25.62, and 18.31 % of carbohydrates, respectively.
24740695	4	1	gly	containing	727:736	arg1	glycoproteins AND carbohydrates	glycoproteins			carbohydrates	Fterm		glycoproteins			In addition, AaP-1, AaP-2, AaP-3, and AaP-4 were found to be glycoproteins, containing 21.75, 22.27, 25.62, and 18.31 % of carbohydrates, respectively.
25171516	2	21	gly	protein	254:260	arg1	glycosaminoglycan (GAG) side chains	protein			glycosaminoglycan (GAG) side chains	Fterm		protein			They are made up of a core protein with glycosaminoglycan (GAG) side chains.
28989689	1	23	gly	N-glycosylated	141:154	arg1	The prion protein	protein				Fterm		protein			The prion protein (PrP) is an N-glycosylated protein attached to the outer leaflet of eukaryotic cell membranes via a glycosylphosphatidylinositol (GPI) anchor.
26460376	6	6	part_of	tris	1156:1159	arg1	composition	tris(3,5-dimethylphenylcarbamate		composition		OGER	Site	tris(3,5-dimethylphenylcarbamate	Q9NQV6	position	In addition, the influence of composition and interaction of amylose tris(3,5-dimethylphenylcarbamate) and chitin bis(3-chloro-4-methylphenylcarbamate) in the biselector CSPs on the chiral recognition and the elute orders of enantiomers was also discussed in detail.
26280087	3	8	gly	O-GlcNAc	515:522	arg1	an HLA peptide			an HLA peptide	an HLA peptide		Site			peptide	A cytosolic O-GlcNAc modification is normally terminal and does not extend to produce a polysaccharide, but O-GlcNAc on an HLA peptide presents a special case because the loaded HLA class I complex traffics through the endoplasmic reticulum and Golgi apparatus on its way to the cell membrane and is hence exposed to glycosyltransferases.
26483702	2	58	gly	glycosylated	270:281	arg1	a heavily glycosylated protein	a heavily glycosylated protein				Fterm		protein			Native UT-A1 from kidney inner medulla (IM) is a heavily glycosylated protein with two glycosylation forms of 97 and 117 kDa.
26484870	8	39	gly	glycosylated	1355:1366	arg1	Antigenic sites			Antigenic sites						sites	Antigenic sites that elicit neutralizing antibodies are more heavily glycosylated than those that elicit non-neutralizing antibodies, which suggest that HCMV gB uses glycans to shield neutralizing epitopes while exposing non-neutralizing epitopes.
27339322	8	56	part_of	domains	1160:1166	arg1	composites	domains		composites						composites	Dynamic mechanical analysis (DMA) revealed an elevational trend in the glass transition temperature of amylopectin-rich domains in composites.
28189223	4	28	part_of	α-Fe2O3/PPy/CDCA	662:677	arg1	the α-Fe2O3/PPy/CDCA (FPCA) composite	α-Fe2O3/PPy		the α-Fe2O3/PPy/CDCA (FPCA) composite		OGER	Site	α-Fe2O3/PPy	P01298	composite	When utilized as electromagnetic interference (EMI) shielding materials, the α-Fe2O3/PPy/CDCA (FPCA) composite has the highest total shielding effectiveness (SEtotal) of 39.4dB, about 2.0, 2.9, and 1.3 times that of the acid-treated CDCA (19.3dB), PPy (13.6dB), and α-Fe2O3/CDCA (29.3dB), respectively.
28953376	1	38	gly	glycoproteins	135:147	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			Glycosylation not only impacts the functions of glycoproteins but can also improve glycoprotein stability and folding efficiency-characteristics that are desirable for protein engineering and therapeutic design.
28953376	1	69	gly	glycoprotein	170:181	arg1	glycoprotein stability	glycoprotein stability				Fterm		glycoprotein			Glycosylation not only impacts the functions of glycoproteins but can also improve glycoprotein stability and folding efficiency-characteristics that are desirable for protein engineering and therapeutic design.
24415556	3	6	gly	glycoproteins	600:612	arg1	immature glycoproteins	immature glycoproteins				Fterm		glycoproteins			UGGT1 is a well-documented enzyme which functions as a folding sensor in the endoplasmic reticulum, by the virtue of its ability to transfer a glucose residue to non-glucosylated high-mannose-type glycans of immature glycoproteins exhibiting non-native conformation.
28891420	7	48	gly	protein	1447:1453	arg1	polysaccharides	protein			polysaccharides	Fterm		protein			Finally, through the Fourier transform infrared spectroscopy, it was found that Al(III) was beneficial for the proliferation and secretion of TB-EPS functional groups, especially the functional groups of protein and polysaccharides.
25129633	14	59	part_of	pectin	1785:1790	arg1	pectin composition	pectin		pectin composition		Fterm	Site	pectin		position	CONCLUSIONS This is the first study to demonstrate changes in pectin composition during stomatal development in any plant.
24842272	7	0	gly	glycopeptides	1342:1354	arg2	type-1 mucin glycopeptides			type-1 mucin glycopeptides						glycopeptides	The obtained glycosylated 9-fluorenylmethoxycarbonyl (Fmoc)-protected amino acid building blocks were employed in synthesis of type-1 mucin glycopeptides, which are useful in biological applications.
28068519	1	45	gly	heparin	228:234	arg1	the mono- and disaccharide subunits	heparin			the mono- and disaccharide subunits	Fterm		heparin			An NMR HSQC method has recently been proposed for the quantitative determination of the mono- and disaccharide subunits of heparin and low molecular weight heparins (LMWH).
28989689	2	20	gly	glycosylation	351:363	arg1	misfolded prion protein	misfolded prion protein				Fterm		protein			Different prion strains have distinct glycosylation patterns and the extent of glycosylation of potentially pathogenic misfolded prion protein (PrPSc) has a major impact on several prion-related diseases (transmissible spongiform encephalopathies, TSEs).
26680323	6	25	part_of	peptides	921:928	arg1	three serine phospholated sites	peptides		three serine phospholated sites						sites	Furthermore, multi-phosphorylated peptides with three serine phospholated sites (S*S*S*) demonstrated high affinity to Ti-CTS.
26680323	6	37	part_of	multi-phosphorylated	900:919	arg1	multi-phosphorylated peptides	multi		multi-phosphorylated peptides		OGER	Site	multi		peptides	Furthermore, multi-phosphorylated peptides with three serine phospholated sites (S*S*S*) demonstrated high affinity to Ti-CTS.
25211026	0	124	gly	protein	21:27	arg1	Sialylation	protein			Sialylation	Fterm		protein	19122		Sialylation of prion protein controls the rate of prion amplification, the cross-species barrier, the ratio of PrPSc glycoform and prion infectivity.
29296958	6	32	gly	O-glycosites	1230:1241	arg2	O-glycosites			O-glycosites						O-glycosites	Using an unbiased screen to identify associations between O-glycosites and protein annotations we found that O-glycans were over-represented close (± 15 amino acids) to tandem repeat regions, protease cleavage sites, within propeptides, and located on a select group of protein domains.
26196117	11	112	part_of	receptors	2065:2073	arg1	sulfated fragments	receptors		sulfated fragments		Fterm	Site	receptors		fragments	Several of these studies focused on sulfated fragments of chemokine receptors, key mediators of leukocyte trafficking and inflammation.
27923477	10	15	part_of	heparin	1734:1740	arg1	cleavage sites	structure of heparin		cleavage sites		Fterm	Site	structure of heparin		sites	Each group of building blocks revealed different aspects of the properties of LMWHs, such as functional motifs required for anticoagulant activity, the structure of heparin starting materials, cleavage sites in the depolymerization reaction, and undesired structural modifications resulting from side reactions.
24331712	8	17	part_of	MCS-based	1818:1826	arg1	the MCS-based composites	MCS		the MCS-based composites		OGER	Site	MCS	Q96EN8	composites	In vivo analysis in a subcutaneous Wistar rat model at 1, 4 and 12 weeks showed superior implant integration and adipogenesis in the MCS-based composites, with allogenic ASCs promoting cell infiltration, angiogenesis and ultimately, fat formation.
27449907	1	73	part_of	gp120	177:181	arg1	The V1/V2 domain	gp120		The V1/V2 domain		PUBTATOR	Site	gp120	3700	domain	The V1/V2 domain of the HIV-1 envelope protein gp120 possesses two important epitopes: a glycan-dependent epitope recognized by the prototypic broadly neutralizing monoclonal antibody (bN-mAb), PG9, as well as an epitope recognized by non-neutralizing antibodies that has been associated with protection from HIV infection in the RV144 HIV vaccine trial.
27449907	1	118	part_of	possesses	183:191	arg1	the HIV-1 envelope protein gp120 AND an epitope	gp120		epitope	a glycan-dependent epitope	PUBTATOR	Site	gp120	3700	epitope	The V1/V2 domain of the HIV-1 envelope protein gp120 possesses two important epitopes: a glycan-dependent epitope recognized by the prototypic broadly neutralizing monoclonal antibody (bN-mAb), PG9, as well as an epitope recognized by non-neutralizing antibodies that has been associated with protection from HIV infection in the RV144 HIV vaccine trial.
27449907	1	118	part_of	possesses	183:191	arg1	the HIV-1 envelope protein gp120 AND two important epitopes	gp120		epitopes	a glycan-dependent epitope	PUBTATOR	Site	gp120	3700	epitopes	The V1/V2 domain of the HIV-1 envelope protein gp120 possesses two important epitopes: a glycan-dependent epitope recognized by the prototypic broadly neutralizing monoclonal antibody (bN-mAb), PG9, as well as an epitope recognized by non-neutralizing antibodies that has been associated with protection from HIV infection in the RV144 HIV vaccine trial.
24407857	10	36	part_of	[CEL + CS	1660:1668	arg1	the biodegradable, biocompatible and nontoxic [CEL + CS] composites	CEL		the biodegradable, biocompatible and nontoxic [CEL + CS] composites		OGER	Site	CEL	P19835	composites	These results clearly indicate that the biodegradable, biocompatible and nontoxic [CEL + CS] composites, particularly those dried by lyophilizing, can be effectively used as a material in wound dressings.
26680323	7	22	part_of	multi-phosphorylated	1115:1134	arg1	especially multi-phosphorylated peptides	multi		especially multi-phosphorylated peptides		OGER	Site	multi		peptides	Hence, this method had great potential for future studies of complex phosphoproteomes and especially multi-phosphorylated peptides.
24342348	0	7	gly	N-glycoprotein	242:255	arg1	N-glycoprotein linkage region analogs	N-glycoprotein linkage region analogs				Fterm		N-glycoprotein			Examination of the influence of C5-hydroxymethyl group and configurations of hydroxyl groups at C2, C3, and C4 stereocentres on the N-glycosidic torsion: synthesis and X-ray crystallographic investigation of N-(D-ribopyranosyl)alkanamides as N-glycoprotein linkage region analogs.
26871442	6	46	gly	glycoproteins	988:1000	arg1	the E1E2 envelope glycoproteins	the E1E2 envelope glycoproteins				Fterm		glycoproteins			At the end of lectin exposure, the genome of the isolated strains was sequenced and several potential resistance mutations in the E1E2 envelope glycoproteins were identified.
27508003	10	116	part_of	sites	1495:1499	arg1	Aspergilli homologous proteins	proteins		sites		Fterm	Site	proteins		sites	Selected proteins were evaluated for conservation of the N-glyc sites in Aspergilli homologous proteins, but a pattern of conservation was not observed.
25753715	1	8	gly	glycoproteins	209:221	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			The frequency of glycosylated protein 3D structures in the Protein Data Bank (PDB) is significantly lower than the proportion of glycoproteins in nature, and if glycan 3D structures are present, then they often exhibit a large degree of errors.
25750913	6	80	part_of	arabinogalactan-proteins	1141:1164	arg1	arabinogalactan-proteins (AGP) epitopes	proteins		arabinogalactan-proteins (AGP) epitopes		Fterm	Site	proteins		epitopes	Other compositional changes included extensin and xyloglucan levels peaking in the REZ and increasing levels of arabinogalactan-proteins (AGP) epitopes from the MS to the LEZ, which remained high through the subsequent mature zones.
25529653	5	36	part_of	vitamin	953:959	arg1	proline	vitamin A		proline		Cterm	AminoAcid	vitamin A		proline	The other nutritional components present in high amounts are proline, chlorophyll A and B, all the essential amino acids and vitamin A, E and C.
25211026	2	9	part_of	contains	370:377	arg1	a sialoglycoprotein AND two conserved N-glycosylation sites	a sialoglycoprotein		two conserved N-glycosylation sites		Fterm	Site	sialoglycoprotein	19122	sites	Pr(PC) is a sialoglycoprotein that contains two conserved N-glycosylation sites.
25211026	2	9	part_of	contains	370:377	arg1	Pr AND two conserved N-glycosylation sites	Pr		two conserved N-glycosylation sites		PUBTATOR	Site	Pr(PC	19122	sites	Pr(PC) is a sialoglycoprotein that contains two conserved N-glycosylation sites.
24274499	1	36	part_of	lysozyme	145:152	arg1	positively charged lysozyme (LY) and rectorite (REC) composites	lysozyme		positively charged lysozyme (LY) and rectorite (REC) composites		PUBTATOR	Site	lysozyme	4069	composites	A mixture of positively charged lysozyme (LY) and rectorite (REC) composites was electrosprayed onto negatively charged electrospun cellulose acetate (CA) nanofibrous mats.
26820354	0	22	gly	strain	52:57	arg1	Bioactive exopolysaccharides	strain			Bioactive exopolysaccharides	Fterm		strain			Bioactive exopolysaccharides from a S. thermophilus strain: Screening, purification and characterization.
26290580	0	3	gly	peptidoglycan	71:83	arg1	muropeptides			muropeptides	muropeptides		Site			muropeptides	Structural characterization of muropeptides from Chlamydia trachomatis peptidoglycan by mass spectrometry resolves "chlamydial anomaly".
29156586	8	90	gly	glycopeptides	1421:1433	arg2	221 glycopeptides			221 glycopeptides						glycopeptides	This study reveals unsuspected structural diversity of compounds such as 221 glycopeptides, displaying different glycan structures.
28698076	6	11	part_of	CPN	897:899	arg1	CPN composite	CPN		CPN composite		OGER	Site	CPN		composite	Water vapor and oxygen permeability evaluations indicated that CPN composite could maintain a moist environment over wound bed.
27667544	8	28	part_of	A	1483:1483	arg1	the chitin-binding domain	the marine bacterial GH-18 chitinase A		the chitin-binding domain		Cterm	Site	the marine bacterial GH-18 chitinase A		domain	These data confirm the physiological role of the chitin-binding domain of the marine bacterial GH-18 chitinase A in chitin-chitinase interactions.
27667544	8	68	part_of	chitin-binding	1421:1434	arg1	the chitin-binding domain	chitin		the chitin-binding domain		Fterm	Site	chitin		domain	These data confirm the physiological role of the chitin-binding domain of the marine bacterial GH-18 chitinase A in chitin-chitinase interactions.
27939510	1	9	gly	residue	171:177	arg1	Crude polysaccharides			residue	Crude polysaccharides					residue	Crude polysaccharides (MPS) from soybean residue fermented with Morchella esculenta were extracted and purified by DEAE Sephadex A-50 chromatography and Sephadex G-100 size-exclusion chromatography in sequence.
26369027	11	47	part_of	HAp/CTS	1543:1549	arg1	the Mg incorporated HAp/CTS composite	HAp		the Mg incorporated HAp/CTS composite		OGER	Site	HAp	Q15424	composite	From the cytotoxicity analysis against NIH 3T3 fibroblast, it was observed that the Mg incorporated HAp/CTS composite was less toxic than the MHO/CTS composite.
26109728	1	33	part_of	gp120	170:174	arg1	UNLABELLED The V3 region	gp120		UNLABELLED The V3 region		PUBTATOR	Site	gp120	3700	region	UNLABELLED The V3 region of HIV-1 gp120 is important for virus-coreceptor interaction and highly immunogenic.
26280087	5	22	gly	peptides	890:897	arg1	centrally located oligosaccharides			peptides	centrally located oligosaccharides					peptides	HLA class I peptides with centrally located oligosaccharides have been shown to be immunogenic and may thus be important targets for immune surveillance.
24737672	2	39	gly	N-glycosylated	360:373	arg1	Many secretory proteins				Many secretory proteins						Many secretory proteins are N-glycosylated, and despite some recent progress, little is known about the mechanism that selects misfolded glycoproteins for degradation in plants.
24737672	2	50	gly	glycoproteins	469:481	arg1	misfolded glycoproteins	misfolded glycoproteins				Fterm		glycoproteins			Many secretory proteins are N-glycosylated, and despite some recent progress, little is known about the mechanism that selects misfolded glycoproteins for degradation in plants.
25701653	6	49	part_of	containing	1109:1118	arg1	A database AND all theoretical structural compositions	A database		all theoretical structural compositions		Fterm	Site	database		positions	A database containing all theoretical structural compositions was established to assist the mass spectra interpretation.
27449907	0	53	gly	glycoprotein	39:50	arg1	HIV-1 glycoprotein 120	HIV-1 glycoprotein 120				Fterm		glycoprotein			Fragments of the V1/V2 domain of HIV-1 glycoprotein 120 engineered for improved binding to the broadly neutralizing PG9 antibody.
27998108	10	28	part_of	[CEL+KER+AgClNPs	2143:2158	arg1	the [CEL+KER+AgClNPs] composite	CEL		the [CEL+KER+AgClNPs] composite		OGER	Site	CEL	P19835	composite	Both AgClNPs and Ag0NPs were found to be toxic to human fibroblasts at higher concentration (>0.72 mmol), and for the same silver content, the [CEL+KER+AgClNPs] composite is relatively more toxic than the [CEL+KER+Ag0NPs] composite.
27083821	1	10	gly	glycosylation	182:194	arg1	unprotected d-xylose				unprotected d-xylose						Microwave-assisted, phosphomolybdic acid (PMoA) catalyzed, glycosylation of unprotected d-xylose and d-lyxose, obtained after tandem Mo(VI)-catalyzed xylan hydrolysis-epimerization reaction, provides alkyl xylosides and lyxosides in short reaction times.
27083821	1	10	gly	glycosylation	182:194	arg1	d-lyxose				d-lyxose						Microwave-assisted, phosphomolybdic acid (PMoA) catalyzed, glycosylation of unprotected d-xylose and d-lyxose, obtained after tandem Mo(VI)-catalyzed xylan hydrolysis-epimerization reaction, provides alkyl xylosides and lyxosides in short reaction times.
24174266	0	36	gly	de-N-glycosylated	90:106	arg1	de-N-glycosylated peptides			de-N-glycosylated peptides						peptides	Facile removal of high mannose structures prior to extracting complex type N-glycans from de-N-glycosylated peptides retained by C18 solid phase to allow more efficient glycomic mapping.
24174266	0	59	gly	peptides	108:115	arg1	extracting complex type N-glycans			peptides	extracting complex type N-glycans					peptides	Facile removal of high mannose structures prior to extracting complex type N-glycans from de-N-glycosylated peptides retained by C18 solid phase to allow more efficient glycomic mapping.
27667544	1	5	part_of	TIM	287:289	arg1	ii) the (α/β)8 TIM barrel catalytic domain	8 TIM		ii) the (α/β)8 TIM barrel catalytic domain		OGER	Site	8 TIM	Q9UNS1	domain	Vibrio harveyi chitinase A (VhChiA) is a GH-18 glycosyl hydrolase with a structure containing three distinct domains: i) the N-terminal chitin-binding domain; ii) the (α/β)8 TIM barrel catalytic domain; and iii) the α+β insertion domain.
27667544	1	15	part_of	N-terminal	238:247	arg1	the N-terminal chitin-binding domain	N-terminal		the N-terminal chitin-binding domain		Cterm	Site	N-terminal		domain	Vibrio harveyi chitinase A (VhChiA) is a GH-18 glycosyl hydrolase with a structure containing three distinct domains: i) the N-terminal chitin-binding domain; ii) the (α/β)8 TIM barrel catalytic domain; and iii) the α+β insertion domain.
27667544	1	29	part_of	chitin-binding	249:262	arg1	the N-terminal chitin-binding domain	chitin		the N-terminal chitin-binding domain		Fterm	Site	chitin		domain	Vibrio harveyi chitinase A (VhChiA) is a GH-18 glycosyl hydrolase with a structure containing three distinct domains: i) the N-terminal chitin-binding domain; ii) the (α/β)8 TIM barrel catalytic domain; and iii) the α+β insertion domain.
29022073	4	23	part_of	proteins	877:884	arg1	the composition	proteins		the composition		Fterm	Site	proteins		position	The mechanical properties of the cell wall, the composition of its polysaccharides and their capacity to absorb Al, the expression of genes, and the activities of the wall-modifying proteins were studied.
27515282	1	35	gly	protein	155:161	arg1	high-molecular weight glycosaminoglycan chains	protein			high-molecular weight glycosaminoglycan chains	Fterm		protein			AIMS Exogenously administered biglycan (core protein with high-molecular weight glycosaminoglycan chains) has been shown to protect neonatal cardiomyocytes against simulated ischemia/reperfusion injury (SI/R), however, the mechanism of action is not clear.
28153461	2	11	gly	position	559:566	arg1	almost every disaccharide unit			position	almost every disaccharide unit					position	The backbone of HmG was identified as chondroitin 6-O sulfate, while the major O-4 sulfated fucose branches linked to O-3 position of glucuronic acid in almost every disaccharide unit.
28153461	2	18	gly	linked	545:550	arg1	O-3 position AND the major O-4 sulfated fucose branches			O-3 position	the major O-4 sulfated fucose branches					position	The backbone of HmG was identified as chondroitin 6-O sulfate, while the major O-4 sulfated fucose branches linked to O-3 position of glucuronic acid in almost every disaccharide unit.
25863346	4	9	part_of	domain	1012:1017	arg1	the FSHβCTPα variant	variant		domain		Fterm	Site	variant		domain	The data suggested that the secretion efficiency of these variants from the transfected cells was unaffected by the presence or absence of the CTP linker, N-glycans were attached to the analogs and the hCGβ-CTP domain in the FSHβCTPα variant was O-glycosylated.
25863346	4	57	part_of	hCGβ-CTP	1003:1010	arg1	the hCGβ-CTP domain	CTP		the hCGβ-CTP domain		OGER	Site	CTP	P53007	domain	The data suggested that the secretion efficiency of these variants from the transfected cells was unaffected by the presence or absence of the CTP linker, N-glycans were attached to the analogs and the hCGβ-CTP domain in the FSHβCTPα variant was O-glycosylated.
28821034	0	9	gly	enzymes	110:116	arg1	extracellular polysaccharide	enzymes			extracellular polysaccharide	Fterm		enzymes			The relationship between monosaccharide composition of extracellular polysaccharide and activities of related enzymes in Nostoc flagelliforme under different culture conditions.
24582240	8	50	part_of	XCA/XnHAp	1244:1252	arg1	XCA/XnHAp and XCA/XnHApSr composites	HAp		XCA/XnHAp and XCA/XnHApSr composites		OGER	Site	HAp		composites	XCA/XnHAp and XCA/XnHApSr composites proved to be suitable for osteoblast growth and particularly XCA/XnHapSr composites induced higher alkaline phosphatase activity.
27448235	3	69	gly	glycoproteins	595:607	arg1	structural glycoproteins	structural glycoproteins				Fterm		glycoproteins			The plant cell wall consists predominantly of polysaccharides with the addition of structural glycoproteins, phenolic esters, minerals, lignin, and associated enzymes.
28671532	10	75	part_of	S66T	1174:1177	arg1	the 16S rRNA gene and GyrB sequences	S66T		the 16S rRNA gene and GyrB sequences		Cterm	Site	S66T		sequences	The percentage similarity between the 16S rRNA gene and GyrB sequences of strain S66T and other members of the genus Paraglaciecola were 94-95 % and 84-85 %, respectively.
28953376	7	28	gly	intraglycopeptide	1446:1462	arg2	favorable electrostatic intraglycopeptide interactions			favorable electrostatic intraglycopeptide interactions						intraglycopeptide	Via metadynamics simulations of model α-helical glycopeptides with each of these two interactions, we find that both interactions are stabilizing as a result of favorable electrostatic intraglycopeptide interactions.
28953376	7	61	gly	glycopeptides	1309:1321	arg2	model α-helical glycopeptides			model α-helical glycopeptides						glycopeptides	Via metadynamics simulations of model α-helical glycopeptides with each of these two interactions, we find that both interactions are stabilizing as a result of favorable electrostatic intraglycopeptide interactions.
26266984	6	48	gly	head	862:865	arg1	the pyrophosphate-oligosaccharide head group				the pyrophosphate-oligosaccharide head group						While the pyrophosphate-oligosaccharide head group of lipid-linked oligosaccharides enters the translocation cavity and interacts with positively charged side chains, the lipidic polyprenyl tail binds and activates the transporter but remains exposed to the lipid bilayer during the reaction.
26266984	6	48	gly	head	862:865	arg1	lipid-linked oligosaccharides				lipid-linked oligosaccharides						While the pyrophosphate-oligosaccharide head group of lipid-linked oligosaccharides enters the translocation cavity and interacts with positively charged side chains, the lipidic polyprenyl tail binds and activates the transporter but remains exposed to the lipid bilayer during the reaction.
28163228	4	60	part_of	Ag-NPs	753:758	arg1	composition	NPs		composition		OGER	Site	NPs	P0C0P7	position	UV/vis spectroscopy, SEM, TEM, DLS, XPS, XRD and TGA were employed to characterize the structure and composition of the nanocomposite, surface morphology of fiber/fabrics, particle size of Ag-NPs, chemical interactions of Ag0 and HA functional groups, crystallinity and thermal stability of the wound dressing, respectively.
25915761	6	3	gly	monosialylated	864:877	arg1	mainly monosialylated core 1 O-glycans				mainly monosialylated core 1 O-glycans						Secreted HIV-1 gp140 was modified to a lesser extent with mainly monosialylated core 1 O-glycans, suggesting that the ectodomain of the gp41 transmembrane component may limit the accessibility of Thr499 to glycosyltransferases.
26344283	6	39	part_of	CS	640:641	arg1	nanocomposites	CS		nanocomposites		PUBTATOR	Site	CS	1431	nanocomposites	Formation of hydrogen bonds between CS and CN in nanocomposites prepared by using microfluidization was confirmed by FTIR spectroscopy.
28183605	4	48	part_of	PLG	571:573	arg1	the PLG:CS composite	PLG		the PLG:CS composite		OGER	Site	PLG	P00747	composite	Based on analytical data, the formation of the PLG:CS composite which showed the presence about 19% of CS, decrease in specific surface area, morphological analysis modified, visible change of crystallinity, of FTIR and thermal analysis.
24462668	4	30	gly	sequence	890:897	arg1	the RE oligosaccharide sequence(s)				the RE oligosaccharide sequence(s)						Here we report the isolation and structural characterisation of the RE oligosaccharide sequence(s) of wheat endosperm cell wall AXs.
24663085	5	0	gly	attached	922:929	arg2	the O-6 position AND -α-D-Glcp-(1 → 4)-α-D-GALPA-(1 → 4)-α-D-Glcp-(1 → 4)-β-D-Glcp-(1 → units with poly saccharide side chains composed of → 2)-β-D-Fruf-(1 → 2)-L-sorbose-			the O-6 position	-α-D-Glcp-(1 → 4)-α-D-GALPA-(1 → 4)-α-D-Glcp-(1 → 4)-β-D-Glcp-(1 → units with poly saccharide side chains composed of → 2)-β-D-Fruf-(1 → 2)-L-sorbose-					position	Structural analysis indicated that LP1 consisted of a backbone of → 4)-α-D-Glcp-(1 → 4)-α-D-GALPA-(1 → 4)-α-D-Glcp-(1 → 4)-β-D-Glcp-(1 → units with poly saccharide side chains composed of → 2)-β-D-Fruf-(1 → 2)-L-sorbose-(1 → attached to the O-6 position of the α-D-Glcp residues.
27998108	12	36	gly	used	2569:2572	arg2	[CEL+KER] composites			[CEL+KER] composites						composites	These results, together with our previous finding that [CEL+KER] composites can be used for the controlled delivery of drugs such as ciprofloxacin, clearly indicate that the [CEL+KER+Ag0NPs] composite possesses all of the required properties for it to be successfully used as a high-performance dressing to treat chronic ulcerous infected wounds.
25649385	3	47	gly	motif	597:601	arg1	the three tandem repeats			motif	the three tandem repeats					motif	In the Clostridium difficile cell wall protein family, we show the three tandem repeats of the CWB2 motif are essential for correct anchoring to the cell wall.
26428099	5	52	part_of	PBSA/CNC	1005:1012	arg1	PBSA/CNC composites	PBSA/CNC		PBSA/CNC composites		OGER	Site	PBSA/CNC	P32418	composites	The good mechanical properties, fast crystallization and improved hydrophobicity of PBSA/CNC composites with phthalic anhydride are favor to their practical commercial utilization.
27998108	0	15	part_of	Keratin	85:91	arg1	Biocompatible Silver Nanoparticle Composites	Keratin		Biocompatible Silver Nanoparticle Composites		Fterm	Site	Keratin		Composites	One-Pot Synthesis of Biocompatible Silver Nanoparticle Composites from Cellulose and Keratin: Characterization and Antimicrobial Activity.
25659682	0	39	part_of	dextrin	59:65	arg1	dextrin and policosanol composites	dextrin		dextrin and policosanol composites		Fterm	Site	dextrin		composites	Preparation and characterization of aqueous dispersions of dextrin and policosanol composites.
26063800	1	27	gly	glycoproteins	248:260	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			The T-synthase (core 1 β3-galactosyltransferase) and its molecular chaperone Cosmc regulate the biosynthesis of mucin type O-glycans on glycoproteins, and evidence suggests that both T-synthase and Cosmc are transcriptionally suppressed in several human diseases, although the transcriptional regulation of these two genes is not understood.
26063800	1	34	gly	O-glycans	235:243	arg1	glycoproteins	glycoproteins			O-glycans	Fterm		glycoproteins			The T-synthase (core 1 β3-galactosyltransferase) and its molecular chaperone Cosmc regulate the biosynthesis of mucin type O-glycans on glycoproteins, and evidence suggests that both T-synthase and Cosmc are transcriptionally suppressed in several human diseases, although the transcriptional regulation of these two genes is not understood.
26196117	13	103	part_of	CCR5	2368:2371	arg1	CCR5 sulfopeptides	CCR5		CCR5 sulfopeptides		PUBTATOR	Site	CCR5	1234	sulfopeptides	Using a library of CCR5 sulfopeptides, we demonstrated the critical importance of sulfation at one specific site for supporting HIV-1 infection.
23701219	9	22	gly	used	1307:1310	arg2	composites			composites						composites	The in vitro release profiles of the resulting materials were evaluated in order to ascertain whether composites can be used as encapsulated systems for drug delivery systems.
27508003	13	13	gly	N-glycosylated	1884:1897	arg1	The most common and frequent N-glycosylated motifs			The most common and frequent N-glycosylated motifs						motifs	CONCLUSIONS The most common and frequent N-glycosylated motifs, an overview of the N-glycosylation of the CAZymes and the number of mannoses found in N-glycans were analyzed.
27508003	13	92	gly	CONCLUSIONS	1843:1853	arg1	The most common and frequent N-glycosylated motifs			The most common and frequent N-glycosylated motifs						motifs	CONCLUSIONS The most common and frequent N-glycosylated motifs, an overview of the N-glycosylation of the CAZymes and the number of mannoses found in N-glycans were analyzed.
25629585	3	33	gly	glycopeptide	498:509	arg2	intact N-linked glycopeptide collision-induced-dissociation spectra			intact N-linked glycopeptide collision-induced-dissociation spectra						glycopeptide	In this paper, we present a mass spectrometry-based automated glycopeptide identification platform (MAGIC) to identify peptide sequences and glycan compositions directly from intact N-linked glycopeptide collision-induced-dissociation spectra.
25629585	3	35	gly	glycopeptide	369:380	arg2	a mass spectrometry-based automated glycopeptide identification platform			a mass spectrometry-based automated glycopeptide identification platform						glycopeptide	In this paper, we present a mass spectrometry-based automated glycopeptide identification platform (MAGIC) to identify peptide sequences and glycan compositions directly from intact N-linked glycopeptide collision-induced-dissociation spectra.
27062721	8	30	part_of	ATIII-binding	1592:1604	arg1	the ATIII-binding region	ATIII		the ATIII-binding region		PUBTATOR	Site	ATIII	462	region	Finally, the content of 3-O-sulfo groups of the ATIII-binding region is determined.
27987831	3	21	part_of	CnB	370:372	arg1	chitosan/bioglass (CnB) composites	CnB		chitosan/bioglass (CnB) composites		OGER	Site	CnB	P63098	composites	In this study, bioactivity of chitosan/bioglass (CnB) composites as minimally invasive bone regenerative materials was assessed both in vitro and in vivo.
28385238	4	3	part_of	HA/pectin	810:818	arg1	HA/pectin composition	pectin		HA/pectin composition		Fterm	Site	pectin		position	Additionally, the preliminary studies demonstrated that chondrocyte behavior was dependent on HA/pectin composition and the presence of integrin binding moieties.
27554431	4	64	gly	glycoproteins	565:577	arg1	Lefty proteins	Lefty proteins				Fterm		proteins			Lefty proteins (human Lefty A and B) are secreted glycoproteins, but their mode of secretion and the significance of their "glycan" moiety remain mostly unexplored.
27554431	4	64	gly	glycoproteins	565:577	arg1	secreted glycoproteins	secreted glycoproteins				Fterm		glycoproteins			Lefty proteins (human Lefty A and B) are secreted glycoproteins, but their mode of secretion and the significance of their "glycan" moiety remain mostly unexplored.
29032210	1	6	gly	composition	184:194	arg1	lipopolysaccharide (LPS)-stimulated RAW264.7 macrophage			position	lipopolysaccharide (LPS)-stimulated RAW264.7 macrophage					position	This study was designed to study the chemical composition of Cyclocarya paliurus polysaccharide and inflammatory effects in lipopolysaccharide (LPS)-stimulated RAW264.7 macrophage.
26187191	8	19	part_of	CHS	1079:1081	arg1	The CHS composites	CHS		The CHS composites		OGER	Site	CHS	Q99698	composites	The CHS composites were found to have higher porosity (62%) compared to the CHC composites (porosity 42%) and better mechanical properties.
26362834	6	16	gly	origin	1066:1071	arg1	ten commercial sucrose-based sugar products	origin			ten commercial sucrose-based sugar products	Fterm		origin			The method was applied to ten commercial sucrose-based sugar products of different botanical origin.
24183808	1	60	part_of	multi-walled	175:186	arg1	chitosan (CS) functionalized multi-walled carbon nanotube (MWCNT) composites	multi		chitosan (CS) functionalized multi-walled carbon nanotube (MWCNT) composites		OGER	Site	multi		composites	We report a simple method for engineering chitosan (CS) functionalized multi-walled carbon nanotube (MWCNT) composites with a biomedically important polymer, poly-2-hydroxyethyl methacrylate (polyHEMA), by chemical grafting HEMA monomers via free radical polymerization.
28024535	7	14	part_of	amylopectin	788:798	arg1	16.6, 10.6, and 5.00 glucosyl residues	amylopectin		16.6, 10.6, and 5.00 glucosyl residues		Fterm	Site	amylopectin		residues	The average chain length, external chain length, and internal chain length of quinoa amylopectin were 16.6, 10.6, and 5.00 glucosyl residues, respectively.
26344283	1	21	part_of	chitosan	98:105	arg1	Biocomposites	chitosan		Biocomposites		PUBTATOR	Site	chitosan	1431	Biocomposites	Biocomposites of chitosan (CS)/cellulose nanocrystals (CN) were prepared by using solution casting method.
26290580	3	31	part_of	PG	788:789	arg1	PG fragments	PG		PG fragments		Cterm	Site	PG		fragments	Pathogenic chlamydial species are known to activate nucleotide-binding oligomerization domain-containing protein 2 (NOD2) innate immune receptors by as yet uncharacterized ligands, which are presumed to be PG fragments (muramyl di- and tripeptides).
25863346	3	56	part_of	subunit	521:527	arg1	the tethered subunit domains	subunit		the tethered subunit domains		Fterm	Site	subunit		domains	To address this issue, we designed and expressed three SC bovine FSH analogs in CHO cells: (i) FSHβα in which the tethered subunit domains are linked in tandem; (ii) FSHβCTPα that contains the carboxy terminal peptide (CTP) of the human choriogonadotropin (hCG) β subunit as a spacer, and (iii) FSHβboCTPα in which the linker is derived from a CTP-like sequence (boCTP) decoded from the bovine LHβ DNA.
25863346	3	59	part_of	subunit	662:668	arg1	the carboxy terminal peptide	subunit		the carboxy terminal peptide		Fterm	Site	subunit		peptide	To address this issue, we designed and expressed three SC bovine FSH analogs in CHO cells: (i) FSHβα in which the tethered subunit domains are linked in tandem; (ii) FSHβCTPα that contains the carboxy terminal peptide (CTP) of the human choriogonadotropin (hCG) β subunit as a spacer, and (iii) FSHβboCTPα in which the linker is derived from a CTP-like sequence (boCTP) decoded from the bovine LHβ DNA.
25863346	3	75	part_of	CTP-like	742:749	arg1	a CTP-like sequence	CTP		a CTP-like sequence		OGER	Site	CTP	P53007	sequence	To address this issue, we designed and expressed three SC bovine FSH analogs in CHO cells: (i) FSHβα in which the tethered subunit domains are linked in tandem; (ii) FSHβCTPα that contains the carboxy terminal peptide (CTP) of the human choriogonadotropin (hCG) β subunit as a spacer, and (iii) FSHβboCTPα in which the linker is derived from a CTP-like sequence (boCTP) decoded from the bovine LHβ DNA.
25863346	3	25	part_of	contains	578:585	arg1	(ii) FSHβCTPα AND the carboxy terminal peptide	(ii) FSHβCTPα		the carboxy terminal peptide		OGER	Site	CTP	P53007	peptide	To address this issue, we designed and expressed three SC bovine FSH analogs in CHO cells: (i) FSHβα in which the tethered subunit domains are linked in tandem; (ii) FSHβCTPα that contains the carboxy terminal peptide (CTP) of the human choriogonadotropin (hCG) β subunit as a spacer, and (iii) FSHβboCTPα in which the linker is derived from a CTP-like sequence (boCTP) decoded from the bovine LHβ DNA.
23731085	6	33	part_of	HPC	927:929	arg1	HPC containing composition	HPC		HPC containing composition		OGER	Site	HPC	P11498	position	The saturation solubility of aripiprazole from nanoparticle (NP) and coprecipitate (CP) from PVP and Pluronic was comparable, however, NP of HPC containing composition showed higher solubility when compared to its CP compositions.
28183605	2	35	part_of	PLG	245:247	arg1	the PLG:CS composite	PLG		the PLG:CS composite		OGER	Site	PLG	P00747	composite	Initially, the PLG:CS composite was obtained using glutaraldehyde (GLA) as a reticular agent.
28602986	12	42	part_of	CNF-P	1559:1563	arg1	the CNF-P composite	CNF-P		the CNF-P composite		Cterm	Site	CNF-P	P32926	composite	Consequently, in terms of industrial applications, although the CNF-P composite had mechanical advantages, the CNF-Si composite displayed the best thermo-mechanical properties.
24415556	5	21	gly	N-glycosylated	973:986	arg1	N-glycosylated proteins	N-glycosylated proteins				Fterm		proteins			This study aimed to reveal the property of human UGGT2 by using synthetic substrates such as fluorescently labeled glycans and N-glycosylated proteins.
26721884	12	87	part_of	NKCC2	1652:1656	arg1	NKCC2 N-glycosylation sites	NKCC2		NKCC2 N-glycosylation sites		PUBTATOR	Site	NKCC2	6557	sites	In contrast, mutations of NKCC2 N-glycosylation sites abolished the effects of OS9, indicating that OS9-induced protein degradation is N-glycan-dependent.
25629918	1	48	part_of	protein	222:228	arg1	composites	protein		composites		Fterm	Site	protein		composites	In the present study, we were able to produce composites of wheat gluten (WG) protein and a novel genetically modified potato starch (MPS) with attractive mechanical and gas barrier properties using extrusion.
27176049	2	2	part_of	NIR-responsive	371:384	arg1	a NIR-responsive hydrogel-nanorod composite	NIR		a NIR-responsive hydrogel-nanorod composite		OGER	Site	NIR	Q9Y3T9	composite	MATERIALS & METHODS Gold nanorods were mixed with hyaluronic acid derivatives modified with β-cyclodextrin or adamantane to create a NIR-responsive hydrogel-nanorod composite.
26280087	0	23	part_of	HLA	21:23	arg1	HLA Class-I-Bound Peptides	HLA		HLA Class-I-Bound Peptides		OGER		HLA			Extended O-GlcNAc on HLA Class-I-Bound Peptides.
25726973	1	12	gly	nonglycosylated	251:265	arg1	three nonglycosylated proteins	three nonglycosylated proteins				Fterm		proteins			Porcine reproductive and respiratory syndrome virus (PRRSV) is a positive-sense ssRNA virus whose envelope contains four glycoproteins and three nonglycosylated proteins.
25726973	1	18	gly	glycoproteins	227:239	arg1	four glycoproteins	four glycoproteins				Fterm		glycoproteins			Porcine reproductive and respiratory syndrome virus (PRRSV) is a positive-sense ssRNA virus whose envelope contains four glycoproteins and three nonglycosylated proteins.
28953376	3	68	gly	glycosylation	773:785	arg2	natural α-helical glycosylation sites			natural α-helical glycosylation sites						sites	We identify two glycan conformations with an Asn χ1 of 180° or 300° that are amenable to α-helical structure in natural α-helical glycosylation sites in the Protein Data Bank.
26686158	4	13	part_of	PLA/EVA-GMA/CF	812:825	arg1	PLA/EVA-GMA/CF ternary composites	EVA		PLA/EVA-GMA/CF ternary composites		OGER	Site	EVA	O60487	composites	PLA/EVA-GMA/CF ternary composites displayed improved adhesion and dispersion of fibres into the matrix as compared to PLA/CF system.
27449907	0	112	part_of	glycoprotein	39:50	arg1	the V1/V2 domain	glycoprotein		the V1/V2 domain		Fterm	Site	glycoprotein		domain	Fragments of the V1/V2 domain of HIV-1 glycoprotein 120 engineered for improved binding to the broadly neutralizing PG9 antibody.
27388010	2	52	part_of	heparin	244:250	arg1	the heterogeneous backbone sequences	heparin		the heterogeneous backbone sequences		Fterm	Site	heparin		sequences	They inherit the heterogeneous backbone sequences of the parent heparin, while the chemical depolymerization process modifies the nonreducing end (NRE) and reducing end (RE) of their sugar chains.
28989689	0	12	gly	carrying	43:50	arg1	Semisynthetic prion protein (PrP) variants AND glycan mimics	Semisynthetic prion protein (PrP) variants			glycan mimics	Fterm		variants			Semisynthetic prion protein (PrP) variants carrying glycan mimics at position 181 and 197 do not form fibrils.
28744842	10	10	part_of	IVD	1992:1994	arg1	composition	IVD		composition		OGER	Site	IVD	Q9JHI5	position	Overall, this approach allows for the nondestructive monitoring of the structure and composition of the IVD at very high resolutions.
26280087	1	13	gly	glycosylated	105:116	arg1	glycosylated human leukocyte antigen (HLA) class I-bound peptides			glycosylated human leukocyte antigen (HLA) class I-bound peptides						peptides	We report unexpected mass spectrometric observations of glycosylated human leukocyte antigen (HLA) class I-bound peptides.
24254641	0	68	gly	glycoproteins	46:58	arg1	urinary prostate glycoproteins	urinary prostate glycoproteins				Fterm		glycoproteins			Capillary electrophoresis of urinary prostate glycoproteins assists in the diagnosis of prostate cancer.
25915761	5	12	gly	disialylated	718:729	arg1	disialylated core 1 glycans				disialylated core 1 glycans						In all cases, the threonines were modified predominantly with disialylated core 1 glycans, together with related core 1 and core 2 structures.
25915761	5	15	gly	modified	690:697	arg1	the threonines AND disialylated core 1 glycans			the threonines	disialylated core 1 glycans					threonines	In all cases, the threonines were modified predominantly with disialylated core 1 glycans, together with related core 1 and core 2 structures.
27667544	7	58	part_of	chitin-binding	1283:1296	arg1	the chitin-binding domain	chitin		the chitin-binding domain		Fterm	Site	chitin		domain	The binding affinity of the isolated domain was significantly lower than that of intact VhChiA, suggesting that the catalytic domain works synergistically with the chitin-binding domain to guide the polymeric substrate into the substrate binding cleft.
26225911	1	61	gly	used	223:226	arg2	Chitosan/nano-hydroxyapatite (HA) composites			Chitosan/nano-hydroxyapatite (HA) composites						composites	Chitosan/nano-hydroxyapatite (HA) composites were first prepared and then used together with chitosan and silk fibroin (SF) to produce a type of four-layer porous scaffold that is potentially applicable for articular cartilage repair.
27607237	2	1	gly	glycoproteins	381:393	arg1	N-linked glycoproteins	N-linked glycoproteins				Fterm		glycoproteins			Glycoside hydrolases (GHs) are essential in this process, and are involved in processing of N-linked glycoproteins or degradation of carbohydrate structures.
26041171	5	24	gly	used	740:743	arg2	The composite			The composite						composite	The composite was used as an insoluble carrier for entrapment of the dairy enzyme rennin, leading to the production of an active biocatalyst for milk coagulation (initiation of milk clotting at about 20 min and full coagulation at about 200 min), creating perspectives for several applications in food enzyme research and technology.
29108390	1	76	gly	glycosylated	232:243	arg1	Tn-antigen	Tn-antigen, sTn			Truncated O-glycans	PUBTATOR		Tn-antigen, sTn	1917		Truncated O-glycans, including Tn-antigen, sTn-antigen, T-antigen, sT-antigen, are incomplete glycosylated structures and their expression occur frequently in tumor tissue.
26993744	3	22	part_of	WTA	386:388	arg1	WTA fragments	WTA		WTA fragments		Cterm	Site	WTA		fragments	We assembled WTA fragments up to three repeating units in length, in two series that differ in the stereochemistry of the glycerolphosphate moiety.
29202699	8	73	gly	presence	1218:1225	arg1	the SS1 strain AND Rhamnose	the SS1 strain			Rhamnose	Fterm		strain			RESULTS The major difference between the two strains of H. pylori is the presence of Rhamnose, Fucose and GalNAc in the SS1 strain, which was either not found or with low abundance in the G27 strain.
29202699	8	73	gly	presence	1218:1225	arg2	the SS1 strain AND GalNAc	the SS1 strain			GalNAc	Fterm		strain			RESULTS The major difference between the two strains of H. pylori is the presence of Rhamnose, Fucose and GalNAc in the SS1 strain, which was either not found or with low abundance in the G27 strain.
29202699	8	73	gly	presence	1218:1225	arg2	the SS1 strain AND Fucose	the SS1 strain			Fucose	Fterm		strain			RESULTS The major difference between the two strains of H. pylori is the presence of Rhamnose, Fucose and GalNAc in the SS1 strain, which was either not found or with low abundance in the G27 strain.
29296958	4	27	gly	glycoproteins	829:841	arg1	649 glycoproteins	649 glycoproteins				Fterm		glycoproteins			We identified the hitherto largest O-glycoproteome from native tissue with a total of 649 glycoproteins and 1123 nonambiguous O-glycosites, demonstrating that O-glycosylation is a ubiquitous modification of extracellular proteins.
29296958	4	37	gly	O-glycosites	865:876	arg2	1123 nonambiguous O-glycosites			1123 nonambiguous O-glycosites						O-glycosites	We identified the hitherto largest O-glycoproteome from native tissue with a total of 649 glycoproteins and 1123 nonambiguous O-glycosites, demonstrating that O-glycosylation is a ubiquitous modification of extracellular proteins.
25124516	4	62	gly	N-glycosylation	579:593	arg1	the Fc region			the Fc region						region	N-glycosylation of the Fc region of antibodies is a post-translational modification required for the structure and molecular function, influencing host inflammatory and regulatory responses.
27688023	7	11	gly	found	971:975	arg1	subsite -1 AND A glucose molecule			subsite -1	A glucose molecule					subsite	A glucose molecule found at subsite -1 in both structures adopts an unusual 1S3 skew-boat conformation.
24415556	1	7	gly	glycoprotein	202:213	arg1	glycoprotein glucosyltransferase				glycoprotein glucosyltransferase						Being recognized as an important constituent of the glycoprotein folding cycle, uridine diphosphate-glucose:glycoprotein glucosyltransferase (UGGT) has been a subject of intense study.
24415556	1	47	gly	glycoprotein	146:157	arg1	the glycoprotein folding cycle	the glycoprotein folding cycle				Fterm		glycoprotein			Being recognized as an important constituent of the glycoprotein folding cycle, uridine diphosphate-glucose:glycoprotein glucosyltransferase (UGGT) has been a subject of intense study.
29156586	6	32	gly	glycosylated	1034:1045	arg1	small glycosylated peptides			small glycosylated peptides						peptides	A previous study has shown that Dendroaspis angusticeps venom contains not only a cocktail of classical toxins, but also small glycosylated peptides.
27127066	11	28	part_of	BCP	1861:1863	arg1	a DOX/βCD-containing BCP ceramic composite	BCP		a DOX/βCD-containing BCP ceramic composite		OGER	Site	BCP	P03999	composite	Together, these results suggest that osteoblasts are viable, proliferative, and osteogenic in the presence of a DOX/βCD-containing BCP ceramic composite.
26428099	2	22	part_of	CNC	565:567	arg1	the composites	CNC		the composites		OGER	Site	CNC	P32418	composites	To improve the compatibility of poly(butylene succinate-co-butylene adipate) (PBSA)/CNC composites, phthalic anhydride was used as a compatilizer during melt mixing, leading to the significant improvement of the mechanical properties and thermal stability of the composites, which is related to the better dispersion of CNC in the composites.
26428099	2	40	part_of	/CNC	328:331	arg1	poly(butylene succinate-co-butylene adipate) (PBSA)/CNC composites	PBSA)/CNC		poly(butylene succinate-co-butylene adipate) (PBSA)/CNC composites		OGER	Site	PBSA)/CNC	P32418	composites	To improve the compatibility of poly(butylene succinate-co-butylene adipate) (PBSA)/CNC composites, phthalic anhydride was used as a compatilizer during melt mixing, leading to the significant improvement of the mechanical properties and thermal stability of the composites, which is related to the better dispersion of CNC in the composites.
26731606	5	73	gly	leucine-rich	1224:1235	arg1	two cell wall-associated leucine-rich repeat receptor-like kinases			leucine	two cell wall-associated leucine-rich repeat receptor-like kinases					leucine	These mutants phenocopy a salt-overly sensitive mutant called sos5, which lacks a fasciclin-like AGP (SOS5/FLA4) as well as a fei1fei2 double mutant, which lacks two cell wall-associated leucine-rich repeat receptor-like kinases.
25915761	2	1	gly	O-glycosylated	348:361	arg1	the threonine			the threonine						threonine	When the gp120s of HIV-1 NL4-3, HIV-1 YU2, HIV-1 Bal, HIV-1 JRFL, and HIV-1 JRCSF were expressed as secreted proteins, the threonine at consensus position 499 was found to be O-glycosylated.
27481894	2	78	part_of	protein	423:429	arg1	different arabinogalactan protein (AGP), pectin, xyloglucan and xylan epitopes	protein		different arabinogalactan protein (AGP), pectin, xyloglucan and xylan epitopes		Fterm	Site	protein		epitopes	We used immunogold labeling to study the spatial and temporal patterns of the composition and distribution of different arabinogalactan protein (AGP), pectin, xyloglucan and xylan epitopes in high-pressure-frozen/freeze-substituted anthers, quantifying and comparing their relative levels in the different anther tissues and developmental stages.
26774420	8	48	gly	origin	1196:1201	arg1	polysaccharides	origin			polysaccharides	Fterm		origin			Analysis of the S15(T) genome revealed the presence of 404 genes that are involved in carbohydrate metabolism, which indicates the metabolic potential to degrade polysaccharides of plant and fungal origin.
25498203	0	3	gly	G3977	81:85	arg1	the O-polysaccharides			G3983 and G3977	the O-polysaccharides					G3983 and G3977	Related structures of the O-polysaccharides of Cronobacter dublinensis G3983 and G3977 containing 3-(N-acetyl-L-alanyl)amino-3,6-dideoxy-D-galactose.
25498203	0	45	gly	G3983	71:75	arg1	the O-polysaccharides			G3983 and G3977	the O-polysaccharides					G3983 and G3977	Related structures of the O-polysaccharides of Cronobacter dublinensis G3983 and G3977 containing 3-(N-acetyl-L-alanyl)amino-3,6-dideoxy-D-galactose.
27310468	1	1	gly	sialylated	135:144	arg1	a sialylated Fc-fusion protein	a sialylated Fc-fusion protein				Fterm		protein			A Chinese hamster ovary (CHO) bioprocess, where the product is a sialylated Fc-fusion protein, was operated at pilot and manufacturing scale and significant variation of sialylation level was observed.
27118501	10	17	gly	used	1464:1467	arg2	the same compositions			the same compositions						positions	Although the same compositions and manufacturing methods were used for all the pellets sizes, the cores produced through a 0.6 and 0.8 mm mesh screens showed similar properties while the properties of cores produced through a 1.0 mm mesh screen were rather different.
26314273	3	30	part_of	MOF	441:443	arg1	MOF deposition	MOF		MOF deposition		OGER	Site	MOF	Q9H7Z6	position	We used chitin-based networks from a marine sponge as a non-toxic, biodegradable, and low-weight support material for MOF deposition.
28620376	5	86	gly	Fc-glycopeptides	985:1000	arg1	C57BL/6	C57BL/6, CD-1		Fc-glycopeptides		PUBTATOR		C57BL/6, CD-1	111334	Fc-glycopeptides	To characterize the glycosylation profile of murine IgG-Fc and in addition evaluate the systematic glycosylation differences between mouse strains, sexes, and IgG subclasses, we used nanoliquid chromatography mass spectrometry (nanoLC-MS(/MS)) to look at the subclass-specific IgG Fc-glycopeptides of male and female mice from the strains BALB/c, C57BL/6, CD-1, and Swiss Webster.
28620376	5	86	gly	Fc-glycopeptides	985:1000	arg1	CD-1	C57BL/6, CD-1		Fc-glycopeptides		PUBTATOR		C57BL/6, CD-1	111334	Fc-glycopeptides	To characterize the glycosylation profile of murine IgG-Fc and in addition evaluate the systematic glycosylation differences between mouse strains, sexes, and IgG subclasses, we used nanoliquid chromatography mass spectrometry (nanoLC-MS(/MS)) to look at the subclass-specific IgG Fc-glycopeptides of male and female mice from the strains BALB/c, C57BL/6, CD-1, and Swiss Webster.
24407857	5	25	part_of	[CEL + CS	809:817	arg1	The [CEL + CS] composites	CEL		The [CEL + CS] composites		OGER	Site	CEL	P19835	composites	The [CEL + CS] composites were found to inhibit the growth of both Gram positive and negative micro-organisms.
27524274	0	34	part_of	pectin	25:30	arg1	composition	pectin		composition		Fterm	Site	pectin		position	Yield and composition of pectin extracted from Tunisian pomegranate peel.
26428152	4	16	part_of	PHB/NCC	789:795	arg1	PHB/NCC composite	PHB		PHB/NCC composite		OGER	Site	PHB	P35232	composite	Compared with PHB/MCC composite, PHB/NCC composite shows degraded spherulite structure with smaller band space and higher flocculation level of peak-to-valley height because of stronger unbalanced stresses in this system.
26428152	4	28	part_of	PHB/MCC	770:776	arg1	PHB/MCC composite	PHB		PHB/MCC composite		OGER	Site	PHB	P35232	composite	Compared with PHB/MCC composite, PHB/NCC composite shows degraded spherulite structure with smaller band space and higher flocculation level of peak-to-valley height because of stronger unbalanced stresses in this system.
24407857	3	35	gly	derived	170:176	arg2	chitin AND a polysaccharide	chitin			a polysaccharide	Fterm		chitin			Chitosan (CS), a polysaccharide derived from chitin, the second most abundant polysaccharide, is widely used in the medical world because of its natural and nontoxic properties and its innate ability for antibacterial and hemostasis effects.
28950882	6	87	gly	strain	1194:1199	arg1	28.95% total sugar	strain			28.95% total sugar	Fterm		strain			The composition of the bioflocculant from the epsB recombinant strain was 28.95% total sugar, 3.464% protein and 44.03% γ-PGA, while in the original strain, these components represented 53.67%, 3.246% and 34.13%, respectively.
25129633	0	19	part_of	pectin	55:60	arg1	pectin composition	pectin		pectin composition		Fterm	Site	pectin		position	Developmental changes in guard cell wall structure and pectin composition in the moss Funaria: implications for function and evolution of stomata.
28620376	5	55	part_of	IgG	981:983	arg1	the subclass-specific IgG Fc-glycopeptides	IgG		the subclass-specific IgG Fc-glycopeptides		PUBTATOR	Site	IgG	668542	Fc-glycopeptides	To characterize the glycosylation profile of murine IgG-Fc and in addition evaluate the systematic glycosylation differences between mouse strains, sexes, and IgG subclasses, we used nanoliquid chromatography mass spectrometry (nanoLC-MS(/MS)) to look at the subclass-specific IgG Fc-glycopeptides of male and female mice from the strains BALB/c, C57BL/6, CD-1, and Swiss Webster.
25659710	6	4	part_of	O-6	1341:1343	arg1	O-6 position	O-2, O-3, O-4, O-6		O-6 position		PUBTATOR	Site	O-2, O-3, O-4, O-6	28893	position	Methylation analysis and NMR spectroscopy revealed that the backbone of poly-mannose consisting of (1→3)-linked β-d-Manp, (1→3)-linked α-d-Manp, and (1→6)-linked α-d-Manp residues, and the main chain were branched at the O-2, O-3, O-4, O-6 position.
26480962	5	17	part_of	TMC-pullulan	811:822	arg1	Nasally administered TMC-pullulan composites	TMC		Nasally administered TMC-pullulan composites		OGER	Site	TMC	P46978	composites	Nasally administered TMC-pullulan composites showed higher DT serum IgG titre when compared with the other composites.
25104038	8	43	part_of	HbCLP1-isolated	1257:1271	arg1	the HbCLP1-isolated domains	HbCLP1		the HbCLP1-isolated domains		PUBTATOR	Site	HbCLP1	110639626	domains	The crystal structures of the HbCLP1-isolated domains were determined at high resolution.
27393889	3	65	part_of	BO/BOC/CT	534:542	arg1	BO/BOC/CT nanocomposite	BOC		BO/BOC/CT nanocomposite		OGER	Site	BOC	Q9BWV1	nanocomposite	The BO/BOC was supported over graphene sand composite and also on chitosan using wet impregnation method to report BO/BOC/GSC and BO/BOC/CT nanocomposite.
24407857	10	43	gly	used	1744:1747	arg2	the biodegradable, biocompatible and nontoxic [CEL + CS] composites			the biodegradable, biocompatible and nontoxic [CEL + CS] composites						composites	These results clearly indicate that the biodegradable, biocompatible and nontoxic [CEL + CS] composites, particularly those dried by lyophilizing, can be effectively used as a material in wound dressings.
26484870	4	18	gly	glycoprotein	834:845	arg1	any betaherpesvirus glycoprotein	any betaherpesvirus glycoprotein				Fterm		glycoprotein			Here, we report the crystal structure of the HCMV gB ectodomain determined to 3.6-Å resolution, which is the first atomic-level structure of any betaherpesvirus glycoprotein.
26223829	5	21	part_of	sites	1000:1004	arg1	the pectin	pectin		sites		Fterm	Site	pectin		sites	It was found that βLgA only interacted with pectins with an adequate amount of charge, and that the complexation between βLgA and pectin was a two-step process initially involving binding of the protein to available sites on the pectin, and subsequently binding of the protein onto the bound protein that has previously adsorbed.
26290580	4	17	part_of	PG	954:955	arg1	PG fragments	PG		PG fragments		Cterm	Site	PG		fragments	We used the NOD2-dependent activation of NF-κB by C. trachomatis-infected cell lysates as a biomarker for the presence of PG fragments within specific lysate fractions.
27998108	12	42	part_of	[CEL+KER	2541:2548	arg1	[CEL+KER] composites	CEL		[CEL+KER] composites		OGER	Site	CEL	P19835	composites	These results, together with our previous finding that [CEL+KER] composites can be used for the controlled delivery of drugs such as ciprofloxacin, clearly indicate that the [CEL+KER+Ag0NPs] composite possesses all of the required properties for it to be successfully used as a high-performance dressing to treat chronic ulcerous infected wounds.
27998108	12	48	part_of	[CEL+KER+Ag0NPs	2660:2674	arg1	the [CEL+KER+Ag0NPs] composite	CEL		the [CEL+KER+Ag0NPs] composite		OGER	Site	CEL	P19835	composite	These results, together with our previous finding that [CEL+KER] composites can be used for the controlled delivery of drugs such as ciprofloxacin, clearly indicate that the [CEL+KER+Ag0NPs] composite possesses all of the required properties for it to be successfully used as a high-performance dressing to treat chronic ulcerous infected wounds.
26088135	10	13	gly	glycosylated	1187:1198	arg1	Cleaved, uncleaved, and fully or partially glycosylated trimers	Cleaved, uncleaved, and fully or partially glycosylated trimers				Fterm		trimers			Cleaved, uncleaved, and fully or partially glycosylated trimers from different clade viruses were produced.
27148706	5	75	gly	proteins	1161:1168	arg1	polysaccharides	proteins			polysaccharides	Fterm		proteins			Fourier transform infrared spectroscopy and X-ray photoelectron spectroscopy analysis demonstrated that Fe(III) exerted a significant influence on the -CONH- groups of proteins and the C-O groups of polysaccharides in EPS.
29558056	3	61	gly	proteins	597:604	arg1	a water-soluble polysaccharides	proteins			a water-soluble polysaccharides	Fterm		proteins			The submerged mycelium of F.velutipes strain Fv-1 contained 14.8% of a water-soluble polysaccharides, 31.6% of proteins, 2.5% of total lipids, vitamins B (B1, B5, B6).
25863346	4	72	gly	O-glycosylated	1047:1060	arg1	the hCGβ-CTP domain			the hCGβ-CTP domain						domain	The data suggested that the secretion efficiency of these variants from the transfected cells was unaffected by the presence or absence of the CTP linker, N-glycans were attached to the analogs and the hCGβ-CTP domain in the FSHβCTPα variant was O-glycosylated.
27998108	9	70	part_of	[CEL+KER+Ag0NPs	1819:1833	arg1	the [CEL+KER+Ag0NPs] composite	CEL		the [CEL+KER+Ag0NPs] composite		OGER	Site	CEL	P19835	composite	Experimental results confirm that there was hardly any Ag0NPs release from the [CEL+KER+Ag0NPs] composite, and hence its antimicrobial activity and biocompatibility is due not to any released Ag0NPs but rather entirely to the Ag0NPs embedded in the composite.
24793172	1	31	part_of	collagen/CH-PCL/CS	265:282	arg1	collagen/CH-PCL/CS composites	CS		collagen/CH-PCL/CS composites		PUBTATOR	Site	CS	1431	composites	Collagen, chitosan-polycaprolactone (CH-PCL) copolymer with PCL content of around 40wt% and chondroitin sulfate (CS) were mixed together at various ratios to prepare collagen/CH-PCL/CS composites and the resulting composites were used to build stratified porous scaffolds that are potentially applicable for articular cartilage repair.
25211026	3	66	part_of	PrPSc	574:578	arg1	amino acid sequence	structure of PrPSc		amino acid sequence		PUBTATOR	Site	structure of PrPSc	19122	sequence	Among the key parameters that control prion replication identified over the years are amino acid sequence of host PrP(C) and the strain-specific structure of PrPSc.
25211026	3	108	part_of	PrP	530:532	arg1	amino acid sequence	PrP		amino acid sequence		PUBTATOR	Site	PrP	19122	sequence	Among the key parameters that control prion replication identified over the years are amino acid sequence of host PrP(C) and the strain-specific structure of PrPSc.
25629585	5	28	gly	glycopeptides	983:995	arg2	N-linked glycopeptides			N-linked glycopeptides						glycopeptides	To ensure accurate Y1-ion assignment, we propose a novel algorithm called Trident that detects a triplet pattern corresponding to [Y0, Y1, Y2] or [Y0-NH3, Y0, Y1] from the fragmentation of the common trimannosyl core of N-linked glycopeptides.
26484870	2	40	gly	glycoprotein	424:435	arg1	glycoprotein B	glycoprotein B				Fterm		glycoprotein B			Entry of HCMV into cells requires the conserved glycoprotein B (gB), thought to function as a fusogen and reported to bind signaling receptors.
27236494	5	9	part_of	PP	963:964	arg1	PP fragments	PP		PP fragments		Cterm	Site	PP		fragments	An estimation of the hetero-aggregates composition was approximately 50% of PP fragments and 50% of microalgae, which led to a final density close to 1.2.
28950170	7	15	part_of	[CEL+KER	1198:1205	arg1	[CEL+KER] composite	While [CEL		[CEL+KER] composite		OGER	Site	While [CEL	P19835	composite	While [CEL+KER] composite is known to possess some antibacterial activity, the enhanced antibacterial observed here was due solely to added Au0NPs.
28620376	6	18	gly	fucosylated	1148:1158	arg1	predominantly fucosylated, diantennary glycans				predominantly fucosylated, diantennary glycans						The structural analysis revealed the presence of predominantly fucosylated, diantennary glycans, with varying amounts of galactosylation and α2,6-sialylation.
27770231	0	3	part_of	synthase	52:59	arg1	starch binding domains	synthase		starch binding domains		Fterm	Site	synthase		domains	The targeting of starch binding domains from starch synthase III to the cell wall alters cell wall composition and properties.
29166575	2	8	gly	presence	566:573	arg1	its composition AND polysaccharides	CGE		position	polysaccharides	OGER		CGE	A0A0U1RPR8	position	AIM OF THE STUDY In the present study, we aimed at forming a chemical characterization and investigation of the antinociceptive and anti-inflammatory activities of the aqueous extract of cashew gum without the presence of polysaccharides in its composition (CGE).
26280087	0	2	gly	O-GlcNAc	9:16	arg1	HLA Class-I-Bound Peptides			HLA Class-I-Bound Peptides	HLA Class-I-Bound Peptides						Extended O-GlcNAc on HLA Class-I-Bound Peptides.
25750913	5	74	gly	glycoproteins	726:738	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			We used glycan microarrays and antibodies to identify the major classes of glycans and glycoproteins present in the cell walls of these sections, and identified the expected decrease in pectin and increase in xylan from the meristematic zone (MS), through the rapid and late elongation zones (REZ, LEZ) to the maturation zone and the rest of the root, including the emerging lateral roots.
29050574	2	28	part_of	CAR/PHEMA	307:315	arg1	CAR/PHEMA compositions	CAR		CAR/PHEMA compositions		OGER	Site	CAR	Q14994	positions	The IPN structure was constructed at CAR/PHEMA compositions of 15/85 and 40/60 (wt/wt) by polymerization and cross-linking of 2-hydroxyethylmethacrylate as an impregnating solvent of CAR gels.
27998108	11	24	part_of	[CEL+KER+Ag0NPs	2309:2323	arg1	the [CEL+KER+Ag0NPs] composite	CEL		the [CEL+KER+Ag0NPs] composite		OGER	Site	CEL	P19835	composite	As expected, by lowering the Ag0NPs concentration to 0.48 mmol or less, the [CEL+KER+Ag0NPs] composite can be made biocompatible while still retaining its antimicrobial activity against bacteria such as E. coli, S. aureus, P. aeruginosa, MRSA, and VRE.
24740695	3	28	part_of	AaPs	550:553	arg1	N-terminal sequences	AaPs		N-terminal sequences		OGER	Site	AaPs	P55786	sequences	N-terminal sequences of AaPs 1-4 up to residue 20 showed a high percentage of identity with the peroxidase from Glycine max.
25655826	3	17	gly	glycoproteins	358:370	arg1	hydroxyproline-rich glycoproteins	hydroxyproline-rich glycoproteins				Fterm		glycoproteins			In addition to polysaccharides, plant cell walls are composed of hydroxyproline-rich glycoproteins (HRGPs), which include several groups of O-glycoproteins, including extensins (EXTs).
25655826	3	49	gly	O-glycoproteins	413:427	arg1	O-glycoproteins	O-glycoproteins				Fterm		O-glycoproteins			In addition to polysaccharides, plant cell walls are composed of hydroxyproline-rich glycoproteins (HRGPs), which include several groups of O-glycoproteins, including extensins (EXTs).
29253994	5	47	gly	-α-IdoA2S	804:812	arg1	the sequence			the sequence						sequence	Structural analysis clarified that the uronic acid unit in glycosaminoglycan (GAG) is the fully epimerized and the sequence of AF-GAG is →4)-α-GlcNAc (1→4)-α-IdoA2S (1→.
26484870	7	44	gly	glycosylation	1218:1230	arg1	the gB ectodomain			the gB ectodomain						ectodomain	The structure illustrates how extensive glycosylation of the gB ectodomain influences antibody recognition.
24310794	6	64	gly	enoxaparin	1086:1095	arg1	14 different oligosaccharides	enoxaparin			14 different oligosaccharides	Fterm		enoxaparin			The effects on cellular proliferation of 14 different oligosaccharides of enoxaparin obtained through ion-exchange chromatography were also assessed.
27134013	5	57	part_of	fibrin	1070:1075	arg1	The composition	fibrin		The composition		Fterm	Site	fibrin		position	The composition of 2% (w/v) fibrin and 1% (w/v) HA showed the highest storage modulus (G'), as compared with the single network counterparts.
28039359	4	0	part_of	mAG	631:633	arg1	mAG composition	mAG		mAG composition		OGER	Site	mAG	P20917	position	Elucidating microbe-specific differences in mAG composition could advance biotechnological applications and lead to new antimicrobial targets.
28698076	10	13	part_of	CPN3	1308:1311	arg1	CPN3% composite	CPN3		CPN3% composite		PUBTATOR	Site	CPN3	70568	composite	The biological study suggests that CPN3% composite may be a potential candidate as a wound healing material for biomedical application.
24737672	5	52	gly	glycoproteins	1087:1099	arg1	properly folded secretory glycoproteins	glycoproteins			regular N-glycan processing	Fterm		glycoproteins			By contrast, N-glycan analysis of different mns mutant combinations revealed that MNS4 and MNS5 are not involved in regular N-glycan processing of properly folded secretory glycoproteins.
25629585	4	24	gly	glycoproteins	653:665	arg1	unknown glycoproteins	unknown glycoproteins				Fterm		glycoproteins			The identification of the Y1 (peptideY0 + GlcNAc) ion is critical for the correct analysis of unknown glycoproteins, especially without prior knowledge of the proteins and glycans present in the sample.
26314273	0	15	part_of	Chitin-MOF	11:20	arg1	Biological Chitin-MOF Composites	MOF		Biological Chitin-MOF Composites		OGER	Site	MOF	Q9H7Z6	Composites	Biological Chitin-MOF Composites with Hierarchical Pore Systems for Air-Filtration Applications.
26724686	2	24	gly	protein	310:316	arg1	carbohydrate	protein			carbohydrate	Fterm		protein			The sulfated polysaccharide contained 61.3% of carbohydrate, 0.8% of protein, 28.2% of ash and 1.33% of moisture respectively.
24415556	0	58	gly	glycoprotein	35:46	arg1	human UDP-glucose:glycoprotein glucosyltransferase				human UDP-glucose:glycoprotein glucosyltransferase						Both isoforms of human UDP-glucose:glycoprotein glucosyltransferase are enzymatically active.
27402833	1	6	gly	glycoprotein	79:90	arg1	The HIV-1 envelope glycoprotein gp120	The HIV-1 envelope glycoprotein gp120				Fterm		glycoprotein			The HIV-1 envelope glycoprotein gp120 is heavily glycosylated and bears numerous high mannose sugars.
24310794	0	29	gly	pro-	18:21	arg1	pro- and anti-proliferative oligosaccharides			pro	pro- and anti-proliferative oligosaccharides					pro	Identification of pro- and anti-proliferative oligosaccharides of heparins.
28290299	0	26	part_of	peas	112:115	arg1	protein composition	peas		protein composition		OGER	Site	peas	Q9BQ90	position	In vitro digestibility, protein composition and techno-functional properties of Saskatchewan grown yellow field peas (Pisum sativum L.) as affected by processing.
28290299	0	37	part_of	protein	24:30	arg1	protein composition	protein		protein composition		Fterm	Site	protein		position	In vitro digestibility, protein composition and techno-functional properties of Saskatchewan grown yellow field peas (Pisum sativum L.) as affected by processing.
29156586	10	27	gly	glycopeptides	1680:1692	arg2	four glycopeptides			four glycopeptides						glycopeptides	Finally, the presence of an S-cysteinylation and hydroxylation of proline on four glycopeptides, never described to date in snake venoms, is also revealed by proteomics and affined by nuclear magnetic resonance (NMR) experiments.
28554545	10	35	part_of	CD-MSP	1436:1441	arg1	CD-MSP composites	MSP		CD-MSP composites		OGER	Site	MSP	Q9BYE2	composites	Using pharmaceutical manufacturing processes, our study shows that CD-MSP composites can retain both hydrophobic and hydrophilic antibiotic compounds with potential translation to triggered release formulation targeting bacterial infections in the colon and lower intestine.
25629585	2	10	gly	glycopeptide	258:269	arg2	intact glycopeptide spectra			intact glycopeptide spectra						glycopeptide	Interpretation of intact glycopeptide spectra is crucial but challenging.
24694253	13	138	part_of	silica/CNC	1864:1873	arg1	the silica/CNC composites	CNC		the silica/CNC composites		OGER	Site	CNC	P32418	composites	For example, heating the silica/CNC composites under an inert atmosphere followed by removal of the silica leaves highly ordered, mesoporous carbon films that can be used as supercapacitor electrodes.
28715109	1	19	part_of	nanotubes-β-cyclodextrin	196:219	arg1	multiwalled carbon nanotubes-β-cyclodextrin composite	nanotubes-β-cyclodextrin		multiwalled carbon nanotubes-β-cyclodextrin composite		Fterm	Site	nanotubes-β-cyclodextrin		composite	A polymeric column that contains multiwalled carbon nanotubes-β-cyclodextrin composite was developed.
25589358	5	58	gly	glycoproteins	809:821	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			One of the polysaccharides had a low molecular weight, compatible with the association with glycoproteins abundantly occurring in yECM.
25915761	3	13	gly	glycosylated	416:427	arg1	the corresponding threonine			the corresponding threonine						threonine	For SIVmac239, the corresponding threonine was also glycosylated when gp120 was recombinantly expressed.
25629585	9	61	part_of	glycoproteins	1735:1747	arg1	36 glycopeptides	glycoproteins		36 glycopeptides		Fterm	Site	glycoproteins		glycopeptides	In the HeLa cell proteome data set, MAGIC processed over a thousand MS(2) spectra in 3 min on a PC and reported 36 glycopeptides from 26 glycoproteins.
25629585	8	30	gly	glycopeptides	1555:1567	arg2	16 glycopeptides			16 glycopeptides						glycopeptides	For the model glycoprotein horseradish peroxidase (HRP) and a 5-glycoprotein mixture, a 2- to 31-fold increase in the relative intensities of the peptide fragments was achieved, which led to the identification of 7 tryptic glycopeptides from HRP and 16 glycopeptides from the mixture via Mascot.
25629585	8	54	gly	glycopeptides	1525:1537	arg2	7 tryptic glycopeptides			7 tryptic glycopeptides						glycopeptides	For the model glycoprotein horseradish peroxidase (HRP) and a 5-glycoprotein mixture, a 2- to 31-fold increase in the relative intensities of the peptide fragments was achieved, which led to the identification of 7 tryptic glycopeptides from HRP and 16 glycopeptides from the mixture via Mascot.
25629585	8	92	gly	glycoprotein	1316:1327	arg1	the model glycoprotein horseradish peroxidase	the model glycoprotein horseradish peroxidase				Fterm		glycoprotein			For the model glycoprotein horseradish peroxidase (HRP) and a 5-glycoprotein mixture, a 2- to 31-fold increase in the relative intensities of the peptide fragments was achieved, which led to the identification of 7 tryptic glycopeptides from HRP and 16 glycopeptides from the mixture via Mascot.
25629585	8	109	gly	5-glycoprotein	1364:1377	arg1	5-glycoprotein	5-glycoprotein				Fterm		5-glycoprotein			For the model glycoprotein horseradish peroxidase (HRP) and a 5-glycoprotein mixture, a 2- to 31-fold increase in the relative intensities of the peptide fragments was achieved, which led to the identification of 7 tryptic glycopeptides from HRP and 16 glycopeptides from the mixture via Mascot.
27845783	0	28	gly	glycopeptide	91:102	arg2	glycopeptide enrichment			glycopeptide enrichment						glycopeptide	Characterization of lectin binding affinities via direct LC-MS profiling: implications for glycopeptide enrichment and separation strategies.
25211026	2	76	gly	N-glycosylation	393:407	arg2	two conserved N-glycosylation sites			two conserved N-glycosylation sites						sites	Pr(PC) is a sialoglycoprotein that contains two conserved N-glycosylation sites.
25211026	2	136	gly	sialoglycoprotein	347:363	arg1	a sialoglycoprotein	a sialoglycoprotein				Fterm		sialoglycoprotein	19122		Pr(PC) is a sialoglycoprotein that contains two conserved N-glycosylation sites.
25505137	2	40	gly	heterogeneity	213:225	arg1	surface carbohydrate compositions				surface carbohydrate compositions						It is well known that different types of Bacillus display heterogeneity of surface carbohydrate compositions, but detection of their presence, quantitation and estimation of variation at the single cell level have not been previously solved.
25498203	5	37	gly	α-D-Glcp	818:825	arg1	strain G3983	strain			α-D-Glcp	Fterm		strain			The following structures of the O-polysaccharides were established: [Formula: see text] where R indicates H in strain G3983 or α-D-Glcp in strain G3977, d-Fuc3NAlaAc indicates 3-(N-acetyl-L-alanyl)amino-3,6-dideoxy-D-galactose.
29556562	5	72	part_of	Ca2+	900:903	arg1	two Ca2+ binding sites	Ca2		two Ca2+ binding sites		OGER	Site	Ca2	P00918	sites	Furthermore, the enzyme contains a heme b group as the prosthetic group and two Ca2+ binding sites.
26553286	10	71	part_of	lectin	1639:1644	arg1	lectin association at sites	lectin		lectin association at sites		Fterm	Site	lectin		sites	The special advantage of processing tissue sections is the monitoring of interference with lectin association at sites that are relevant for functionality.
26553286	10	76	part_of	sites	1661:1665	arg1	lectin association at sites	lectin		sites		Fterm	Site	lectin		sites	The special advantage of processing tissue sections is the monitoring of interference with lectin association at sites that are relevant for functionality.
27402833	4	5	part_of	proteins	598:605	arg1	each domain	proteins		each domain		Fterm	Site	proteins		domain	The Cyt-CVNH structure and glycan recognition profile are similar to those of other CVNH proteins, with each domain specifically binding to Manα(1-2)Manα units on the D1 and D3 arms of high mannose glycans.
28950882	1	7	gly	poly-γ-glutamic	193:207	arg1	BACKGROUND Polysaccharides			glutamic acid	BACKGROUND Polysaccharides					glutamic acid	BACKGROUND Polysaccharides and poly-γ-glutamic acid (γ-PGA) are biomacromolecules that have been reported as bioflocculants, and they exhibit high flocculating activity in many industrial applications.
26920320	7	19	part_of	FOS	1043:1045	arg1	FOS composition	FOS		FOS composition		OGER	Site	FOS	P01100	position	Determining FOS composition directly from the FTIR spectra represents a useful tool to monitor enzymatic synthesis, with strong impact at both an academic and an industrial level.
24274482	4	62	part_of	CIP-agar	755:762	arg1	the CIP-agar composites	CIP		the CIP-agar composites		OGER	Site	CIP	Q5VWP3	composites	The morphology of the CIP-agar composites with aligned and non-aligned CIP under magnetic field was also evaluated by scanning electron microscopy (SEM).
27449907	2	55	gly	glycosylated	626:637	arg1	properly folded and glycosylated fragments			properly folded and glycosylated fragments						fragments	Because both of these epitopes are poorly immunogenic in the context of full length envelope proteins, immunization with properly folded and glycosylated fragments (scaffolds) represents a potential way to enhance the immune response to these specific epitopes.
27998108	5	8	part_of	[CEL+KER+Ag0	1035:1046	arg1	the [CEL+KER+Ag+] and [CEL+KER+Ag0] composites	CEL		the [CEL+KER+Ag+] and [CEL+KER+Ag0] composites		OGER	Site	CEL	P19835	composites	Powder XRD and SEM results show that the silver in the [CEL+KER+Ag+] and [CEL+KER+Ag0] composites is homogeneously distributed throughout the composites in either Ag+ (in the form of AgClNPs) or Ag0NPs form with sizes of 27 ± 2 or 9 ± 1 nm, respectively.
28821034	1	11	gly	enzymes	321:327	arg1	Nostoc flagelliforme extracellular polysaccharide	enzymes			Nostoc flagelliforme extracellular polysaccharide	Fterm		enzymes			The relationship between monosaccharide composition of Nostoc flagelliforme extracellular polysaccharide (EPS) and activities of EPS synthesis enzymes under various carbon sources, nitrogen sources and light culture condition was investigated.
28183605	6	50	part_of	PLG	991:993	arg1	the PLG:CS composite	PLG		the PLG:CS composite		OGER	Site	PLG	P00747	composite	The release profiles show that the PLG:CS composite changed the 5-ASA release speed in analyzed simulated fluids (intestinal and stomach) unlike other systems.
24737672	6	18	gly	glycoproteins	1159:1171	arg1	ER-retained glycoproteins	ER-retained glycoproteins				Fterm		glycoproteins			Overexpression of MNS4 or MNS5 together with ER-retained glycoproteins indicates further that both enzymes can convert Glc0-1Man8-9GlcNAc2 into N-glycans with a terminal α1,6-linked Man residue in the C-branch.
28655919	6	54	gly	used	692:695	arg2	The composites			The composites						composites	The composites were used as efficient absorbents to remove radioiodine anions from water and capture a high amount of I2 vapor in the forms of AgI and iodine molecules.
26656264	11	16	part_of	Low-MW	1322:1327	arg1	Low-MW fragments	Low-MW		Low-MW fragments		Cterm	Site	Low-MW		fragments	PPS2 in Low-MW fragments had the strongest immunoenhancing activities.
28950882	6	4	part_of	composition	1135:1145	arg1	the epsB recombinant strain	strain		composition		Fterm	Site	strain		position	The composition of the bioflocculant from the epsB recombinant strain was 28.95% total sugar, 3.464% protein and 44.03% γ-PGA, while in the original strain, these components represented 53.67%, 3.246% and 34.13%, respectively.
28950882	6	87	part_of	strain	1194:1199	arg1	The composition	strain		The composition		Fterm	Site	strain		position	The composition of the bioflocculant from the epsB recombinant strain was 28.95% total sugar, 3.464% protein and 44.03% γ-PGA, while in the original strain, these components represented 53.67%, 3.246% and 34.13%, respectively.
28578968	5	12	part_of	-Galp	1184:1188	arg1	the O-6 position	Galp		the O-6 position		OGER	Site	Galp	Q9UBC7	position	Methylation results showed that the main chain of LW1 likely involves (1→4)-linked Galp and (1→4)-linked Glcp with its side chains being (1→4,6)-linked Galp through the O-6 position connected to the backbone, whereas the main chain of LW2 likely involves (1→4)-linked Galp and (1→4)-linked Glcp with its side chains being (1→3)-Galp through the O-6 position of (1→3,6)-Galp linked to the main chain.
26876864	3	42	part_of	PBS/PLA/PBS-g-CNC	476:492	arg1	PBS/PLA/PBS-g-CNC composites	CNC		PBS/PLA/PBS-g-CNC composites		OGER	Site	CNC	P32418	composites	The morphological analysis of PBS/PLA/PBS-g-CNC composites before and after etched by CH2Cl2 shows that the addition of DCP and PBS-g-CNC could decrease the size of PBS as a dispersed phase in PLA matrix and improve the dispersion of PBS-g-CNC in both PBS and PLA phases, which could affect the crystallization and mechanical properties of composites.
29253970	5	43	part_of	peptide	802:808	arg1	the composites	peptide		the composites						composites	The structure of the peptide in the composites and the interactions between TO-CNF and the peptide were studied by Fourier transform infrared spectroscopy (FTIR) and X-ray diffraction (XRD).
25915761	4	46	part_of	threonines	508:517	arg1	the influenza A virus H1N1 HA1	H1N1 HA1		threonines		PUBTATOR	AminoAcid	H1N1 HA1	23526	threonines	Similarly-positioned, highly-conserved threonines in the influenza A virus H1N1 HA1 and H5N1 HA1 envelope proteins were also found to carry O-glycans when expressed as secreted proteins.
28103425	10	1	part_of	α-galactosidase	1591:1605	arg1	Trp312	α-galactosidase		Trp312		Fterm	AminoAcid	α-galactosidase		Trp312	Trp312 of the α-galactosidase appears to exclude the equatorial hydroxy group at C4 of glucosides, whereas the corresponding Trp residue in the α-glucoside hydrolase makes a hydrogen bond with this hydroxy group.
28103425	10	44	part_of	residue	1706:1712	arg1	the α-glucoside hydrolase	hydrolase		residue		Fterm	AminoAcid	hydrolase		Trp residue	Trp312 of the α-galactosidase appears to exclude the equatorial hydroxy group at C4 of glucosides, whereas the corresponding Trp residue in the α-glucoside hydrolase makes a hydrogen bond with this hydroxy group.
24793172	1	80	gly	used	329:332	arg2	the resulting composites			the resulting composites						composites	Collagen, chitosan-polycaprolactone (CH-PCL) copolymer with PCL content of around 40wt% and chondroitin sulfate (CS) were mixed together at various ratios to prepare collagen/CH-PCL/CS composites and the resulting composites were used to build stratified porous scaffolds that are potentially applicable for articular cartilage repair.
27508003	7	108	gly	N-glycosylation	1121:1135	arg2	182 N-glycosylation sites			182 N-glycosylation sites						sites	A total of 182 N-glycosylation sites were identified, of which 121 were detected in 67 CAZymes.
27261756	0	69	part_of	Chitosan/PVA/Na-Titanate/TiO2	61:89	arg1	Chitosan/PVA/Na-Titanate/TiO2 composites	PVA		Chitosan/PVA/Na-Titanate/TiO2 composites		OGER	Site	PVA	P32926	composites	Adsorption and photocatalytic degradation of anionic dyes on Chitosan/PVA/Na-Titanate/TiO2 composites synthesized by solution casting method.
28708979	10	87	gly	glycan	1819:1824	arg1	composition			composition	composition		Site			position	MD simulations revealed: i) although membrane-bound glycans do not form stable long-living aggregates, their transient packing is more compact in natural Gb3 as compared with the synthetic analog, ii) similar conformation of Pk glycan in composition of the glycolipids, iii) no effect on the mentioned above results when cholesterol was inserted into membrane, and iv) better accessibility of the synthetic version for interaction with proteins.
27702528	5	32	part_of	region	655:660	arg1	its composition	region		its composition						position	FT-IR spectra of the HMEPS revealed its composition with hydroxyl, alkenes, amide and carboxyl as functional groups and aliphatic amine and alkynes at the fingerprint region.
29556562	6	31	gly	N-glycosylation	936:950	arg2	seven N-glycosylation sites			seven N-glycosylation sites						sites	Moreover, seven N-glycosylation sites were found in the structure, and 49 glycans bound to the two ZoPrx molecules found in the asymmetric unit are clearly visible in the electron density map.
27497655	9	33	part_of	AT-binding	1456:1465	arg1	the heparin AT-binding sequences	AT		the heparin AT-binding sequences		Cterm	Site	AT	462	sequences	The results indicated differences in oligosaccharides related to the cleavage selectivity around the heparin AT-binding sequences of the Teva Enoxaparin Sodium Injection, USP and the originator Sanofi enoxaparin.
27497655	9	79	part_of	heparin	1448:1454	arg1	the heparin AT-binding sequences	heparin		the heparin AT-binding sequences		Fterm	Site	heparin		sequences	The results indicated differences in oligosaccharides related to the cleavage selectivity around the heparin AT-binding sequences of the Teva Enoxaparin Sodium Injection, USP and the originator Sanofi enoxaparin.
27402833	4	22	gly	units	663:667	arg1	the D1 and D3 arms			the D1 and D3 arms	the D1 and D3 arms		Site			arms	The Cyt-CVNH structure and glycan recognition profile are similar to those of other CVNH proteins, with each domain specifically binding to Manα(1-2)Manα units on the D1 and D3 arms of high mannose glycans.
25677379	1	0	gly	glycoproteins	263:275	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			The cell wall of fungi is generally composed of an inner skeletal layer consisting of various polysaccharides surrounded by a layer of glycoproteins.
24415556	6	12	gly	proteins	1210:1217	arg1	glycan specificity	proteins			glycan specificity	Fterm		proteins			The analysis, for the first time, revealed the glucosyltransferase activity of UGGT2, whose specificity was shown to be quite similar to UGGT1, in terms of both glycan specificity and preferential recognition of proteins having non-native conformations.
25655826	4	25	gly	O-glycosylation	605:619	arg2	their subsequent O-glycosylation sites			their subsequent O-glycosylation sites						sites	Proline hydroxylation, an early post-translational modification (PTM) of HRGPs catalyzed by prolyl 4-hydroxylases (P4Hs), defines their subsequent O-glycosylation sites.
24462668	7	60	part_of	α-L-Araf	1522:1529	arg1	an α-L-Araf residue	Araf		an α-L-Araf residue		OGER	AminoAcid	Araf	P10398	residue at	Analysis of RE oligosaccharides, both 2AB labelled (from W-sol Fr) and glycosyl-alditol (from KOH-sol Fr), revealed that the RE glycosyl sequence of wheat endosperm AX comprises a linear (1→4)-β-D-Xylp backbone which may be mono-substituted with either an α-L-Araf residue at the reducing end β-D-Xylp residue and/or penultimate RE β-D-Xyl residue; β-D-Xylp-(1→4)-[α-L-Araf-(1→3)](+/-)-β-D-Xylp-(1→4)-[α-L-Araf-(1→3)](+/-)-β-D-Xylp and/or an α-D-GlcpA residue at the reducing end β-D-Xylp residue; β-D-Xylp-(1→4)-[α-L-Araf-(1→3)](+/-)-β-D-Xylp-(1→4)-[α-D-GlcAp-(1→2)]-β-D-Xylp.
28487197	3	38	part_of	CS/Pec	427:432	arg1	the CS/Pec composite	CS		the CS/Pec composite		PUBTATOR	Site	CS	1431	composite	The presence of AuNPs in the CS/Pec composite was evaluated via WAXS and UV-vis techniques, while SEM analysis assessed the average size of pores (350-600μm).
29556562	0	24	part_of	peroxidase	71:80	arg1	sequence	peroxidase		sequence		PUBTATOR	Site	peroxidase	548137	sequence	Zo-peroxidase: Crystal structure and sequence of a highly-glycosylated peroxidase resistant to high concentrations of H2O2 from Japanese radish.
25129633	6	4	part_of	pectin	898:903	arg1	five pectin epitopes	pectin		five pectin epitopes		Fterm	Site	pectin		epitopes	METHODS Developing stomata were examined and immunogold-labelled in transmission electron microscopy using monoclonal antibodies to five pectin epitopes: LM19 (unesterified HG), LM20 (esterified HG), LM5 (galactan RG1), LM6 (arabinan RG1) and LM13 (linear arabinan RG1).