doc_id	sent_index	relation_id	relation	trigger	trigger_offset	arg_num	arg_base_np	arg_protein	arg_domain	arg_site	arg_sugar	PSource	SiteSource	NProtein	NID	SiteName	sent_text
36126300	5	3	gly	CPAs	788:791	arg1	l-proline			l-proline						proline	The results showed that the addition of CPAs (glycerol, propylene glycol, sucrose, glucose, l-carnitine, l-proline, and skim milk) significantly enhanced the survival rates of the N. farcinica and Y. pestis vaccine strains.
36649861	3	10	gly	used	674:677	arg2	The sustainable composite			The sustainable composite						composite	The sustainable composite was successfully used as an efficient catalyst for activating peroxymonosulfate (PMS) to generate SO4-· and ·OH, then leads to the removal of organic contaminants.
36076460	1	61	gly	used	184:187	arg2	β-alanine			alanine						alanine	In this paper, α-alanine and β-alanine were used as modifiers to prepare α-alanine amidated pectin (α-AP) and β-alanine amidated pectin (β-AP) through enzymatic method.
35636194	1	5	gly	used	283:286	arg2	mung bean-derived porous carbon@chitosan (MBC@CTS) composite			mung bean-derived porous carbon@chitosan (MBC@CTS) composite						composite	We reported a simple and scalable strategy for the preparation of mung bean-derived porous carbon@chitosan (MBC@CTS) composite, which was used to optimize the glassy carbon electrode (GCE).
36478634	9	93	gly	CS	1533:1534	arg1	D-glucuronic acid (GlcA) residues	CS			D-glucuronic acid (GlcA) residues	PUBTATOR		CS	1431		Besides, this interaction attenuated enzyme activity by interfering with a function of Arg500, which is the charge neutralization of the carboxy group of D-glucuronic acid (GlcA) residues in CS.
36478634	9	97	gly	residues	1521:1528	arg1	CS	CS			residues	PUBTATOR		CS	1431		Besides, this interaction attenuated enzyme activity by interfering with a function of Arg500, which is the charge neutralization of the carboxy group of D-glucuronic acid (GlcA) residues in CS.
36828091	6	0	gly	occupied	961:968	arg2	each effective site			each effective site						site	Moreover, each effective site can be occupied with up to 3 molecules of OXPL molecules in vertical forms involving multi-molecular mechanisms.
36380061	2	3	gly	used	407:410	arg2	Nanocomposites			Nanocomposites						Nanocomposites	Nanocomposites of mesoporous silica nanoparticle (MPSNP)/polyvinyl alcohol (PVA) and cellulose nanofiber (CNF)/PVA, which have never been used before, have been evaluated for the consolidation process of the dyed paper manuscripts with madder extract.
36547866	9	66	gly	SSP	1499:1501	arg1	chitin oligosaccharides	SSP			chitin oligosaccharides	PUBTATOR		SSP	39375		The amounts of chitin oligosaccharides from SSP and MMP were about 1/6 (Hi-4), 1/17 (Hi-5) and 1/8 (Hi-4), 1/10 (Hi-5), respectively, in comparison to colloidal chitin.
36005533	3	58	gly	tris-	937:941	arg1	two immobilized polysaccharide type chiral stationary phases	tris			two immobilized polysaccharide type chiral stationary phases	OGER		tris	Q9NQV6		Separation of enantiomers of (±)-2,3,3-trisubstituted marinoepoxides rac-6a-c and (±)-trans-2,3-disubstituted marinoepoxides rac-8a-c was studied using two immobilized polysaccharide type chiral stationary phases (CSPs); tris-(3,5-dichlorophenylcarbamoyl)cellulose stationary phase (CHIRAL ART Cellulose-SC) and tris-(3,5-dimethylphenylcarbamoyl)amylose stationary phase (CHIRAL ART Amylose-SA).
36005533	3	63	gly	tris-	846:850	arg1	two immobilized polysaccharide type chiral stationary phases	tris			two immobilized polysaccharide type chiral stationary phases	OGER		tris	Q9NQV6		Separation of enantiomers of (±)-2,3,3-trisubstituted marinoepoxides rac-6a-c and (±)-trans-2,3-disubstituted marinoepoxides rac-8a-c was studied using two immobilized polysaccharide type chiral stationary phases (CSPs); tris-(3,5-dichlorophenylcarbamoyl)cellulose stationary phase (CHIRAL ART Cellulose-SC) and tris-(3,5-dimethylphenylcarbamoyl)amylose stationary phase (CHIRAL ART Amylose-SA).
36779683	2	74	gly	bio-nanocomposites	388:405	arg1	Col			bio-nanocomposites	Col					bio-nanocomposites	This research aims at developing hybrid bio-nanocomposites with collagen (Col), Nigella sativa (Ns) oil and chitosan (Cs) by a bi-layered green electrospinning on polyvinyl chloride (PVA) layer in a different ratio for tissue regeneration.
35500851	12	72	gly	used	1800:1803	arg2	Chitosan nanocomposites			Chitosan nanocomposites						nanocomposites	Chitosan nanocomposites can be used as a growth regulator for peatland paddy varieties and can accelerate peatland restoration in tropical areas.
35032491	8	37	gly	used	1415:1418	arg2	these biocomposites			these biocomposites						biocomposites	The performed study demonstrated that these biocomposites could be used for applications in the packaging industry.
36778266	1	25	gly	glycoproteins	120:132	arg1	Mucin-domain glycoproteins	Mucin-domain glycoproteins				Fterm		glycoproteins			Mucin-domain glycoproteins are densely O-glycosylated and play critical roles in a host of biological functions.
36778266	1	29	gly	O-glycosylated	146:159	arg1	Mucin-domain glycoproteins	Mucin-domain glycoproteins				Fterm		glycoproteins			Mucin-domain glycoproteins are densely O-glycosylated and play critical roles in a host of biological functions.
35013951	5	7	gly	used	597:600	arg2	a novel bio-composite			a novel bio-composite						bio-composite	bacterium was immobilized on a ZnMgAl-hydrotalcite clay and embedded in calcium alginate beads to generate a novel bio-composite that functions as a bacterial reservoir and as a controlled release material for bacteria to be used as a bio-fertilizer.
35944110	4	4	gly	glycoprotein	660:671	arg1	MSRV glycoprotein	MSRV glycoprotein				Fterm		glycoprotein			Here, we prepared a king of alginate-chitosan composite microsphere to encapsulate the second segment of MSRV glycoprotein (G2 protein) and then evaluated the immune effect of the microsphere vaccine on largemouth bass.
35944110	4	4	gly	glycoprotein	660:671	arg1	G2 protein	G2 protein				Fterm		protein			Here, we prepared a king of alginate-chitosan composite microsphere to encapsulate the second segment of MSRV glycoprotein (G2 protein) and then evaluated the immune effect of the microsphere vaccine on largemouth bass.
35952870	9	36	gly	used	1508:1511	arg2	FW composition			FW composition						position	Overall, these results indicate that predicting the VFA yield of WAS/FW co-fermentation is not just related to FW composition, but FW composition could be used to adjust the VFA profile to a certain extent.
36478634	3	45	gly	has	513:515	arg1	CSE AND mono-sulfated disaccharide units	CSE			mono-sulfated disaccharide units	PUBTATOR		CSE	1433		Each CS isomer exhibits structural heterogeneity; CSE has di-sulfated disaccharide units and mono-sulfated disaccharide units.
36478634	3	45	gly	has	513:515	arg1	CSE AND di-sulfated disaccharide units	CSE			di-sulfated disaccharide units	PUBTATOR		CSE	1433		Each CS isomer exhibits structural heterogeneity; CSE has di-sulfated disaccharide units and mono-sulfated disaccharide units.
36093331	1	39	gly	attached	279:286	arg1	the asparagine 297 AND its N-glycans			the asparagine 297	its N-glycans			Immunoglobulin G		asparagine 297	The essential role of immunoglobulin G (IgG) in immune system regulation and combatting infectious diseases cannot be fully recognized without an understanding of the changes in its N-glycans attached to the asparagine 297 of the Fc domain that occur under such circumstances.
36778266	6	16	gly	glycosylation	1079:1091	arg1	these proteins	these proteins				Fterm		proteins			With this information in-hand, we performed molecular dynamics (MD) simulations of TIM-3 and -4 to demonstrate how glycosylation affects structural features of these proteins.
36877072	4	16	gly	glycosylation	590:602	arg1	the N78 site			the N78 site						site	Oligomannose-type glycosylation has been identified at the N78 site.
37388683	0	15	gly	Glycans	68:74	arg1	the Viral Spike Protein	Protein			Glycans	Fterm		Protein			Polyvalent Nano-Lectin Potently Neutralizes SARS-CoV-2 by Targeting Glycans on the Viral Spike Protein.
35703732	8	24	gly	heterogeneity	1265:1277	arg1	this esophageal ECM	this esophageal ECM				OGER		ECM	Q13201		The heterogeneity of this esophageal ECM is maintained, which implied the preservation of anisotropic tensile properties.
36699698	9	108	gly	glycoprotein	2352:2363	arg1	the oligomannosidic glycoprotein fraction	the oligomannosidic glycoprotein fraction				Fterm		glycoprotein			This workflow and the associated dataset not only allowed us to investigate the oligomannosidic glycoprotein fraction but also to delineate differences mediated at glycosite-level upon kifunensine treatment and outline the potential associated cellular responses.
36448086	9	92	gly	regions	1077:1083	arg1	glycosaminoglycans			regions	glycosaminoglycans					regions	Correlations between shear moduli with water and glycosaminoglycans content of the tissue regions were investigated.
36705863	3	49	gly	used	367:370	arg2	chitosan-pectin composite			chitosan-pectin composite						composite	In the present study, chitosan-pectin composite (Cs-Pc) was used as an adsorbent to remove methylene blue dye (MB) from synthetic wastewater.
35605720	3	43	gly	used	693:696	arg2	the optimized compositions			the optimized compositions						positions	The optimized minimum UV-transmittance was 4.96% when the optimized compositions of alginate (1.05 g), AV (2.95 g), and ZnO-NPs (4.93 wt%) were used.
36526855	6	78	gly	N-glycosylation	931:945	arg2	527th asparagine residues			527th asparagine residues						asparagine residues	Potential N-glycosylation sites were found at 79th, 108th, 121st, 179th, 199th, 507th, and 527th asparagine residues in the shark prothrombin, and treatment with N-glycosidase reduced the molecular mass to 65 kDa.
36526855	6	78	gly	N-glycosylation	931:945	arg2	Potential N-glycosylation sites			Potential N-glycosylation sites						sites	Potential N-glycosylation sites were found at 79th, 108th, 121st, 179th, 199th, 507th, and 527th asparagine residues in the shark prothrombin, and treatment with N-glycosidase reduced the molecular mass to 65 kDa.
37356720	7	22	gly	glycosylated	1722:1733	arg1	glycosylated cell surface proteins	glycosylated cell surface proteins				Fterm		proteins			These studies highlight the effectiveness of substrate-bound vimentin as a ligand for cells and suggest that carbohydrate structures, including the glycocalyx and glycosylated cell surface proteins that contain N-acetyl glucosamine, form a novel class of adhesion receptors for extracellular vimentin that can either directly support cell adhesion to a substrate or fine-tune the glycocalyx adhesive properties.
37356720	7	13	gly	contain	1762:1768	arg1	glycosylated cell surface proteins AND N-acetyl glucosamine	glycosylated cell surface proteins			N-acetyl glucosamine	Fterm		proteins			These studies highlight the effectiveness of substrate-bound vimentin as a ligand for cells and suggest that carbohydrate structures, including the glycocalyx and glycosylated cell surface proteins that contain N-acetyl glucosamine, form a novel class of adhesion receptors for extracellular vimentin that can either directly support cell adhesion to a substrate or fine-tune the glycocalyx adhesive properties.
36356361	12	47	gly	glucose	1748:1754	arg1	protein	protein			glucose	Fterm		protein			The factor loading contribution in the PC1 and PC2 were from iron, fructose, glucose, raffinose and total dietary fibre, selenium (Se) and protein, respectively.
36356361	12	58	gly	fructose	1738:1745	arg1	protein	protein			fructose	Fterm		protein			The factor loading contribution in the PC1 and PC2 were from iron, fructose, glucose, raffinose and total dietary fibre, selenium (Se) and protein, respectively.
35622280	8	16	gly	used	1103:1106	arg2	The composite			The composite						composite	The composite can be used up to five cycles with a small reduction in the removal.
36890858	6	51	gly	fucosylated	1246:1256	arg1	bisected fucosylated N-glycan structures				bisected fucosylated N-glycan structures						N-glycan analysis in situ was correlated to tumor regions annotated on histopathology and revealed that bisected fucosylated N-glycan structures were specific to iCCA tumor regions.
36778266	4	14	gly	glycoprotein	688:699	arg1	the mucin glycoprotein backbone	the mucin glycoprotein backbone				PUBTATOR		mucin glycoprotein	100508689		Here, we present a mucinase (SmE) and demonstrate its ability to selectively cleave along the mucin glycoprotein backbone, similar to others of its kind.
36890858	3	72	gly	glycoproteins	585:597	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			N-glycan structures on glycoproteins can be modified based on the addition or removal of specific N-glycan residues, some of which have been linked to liver diseases.
36890858	3	73	gly	structures	571:580	arg1	glycoproteins	glycoproteins			structures	Fterm		glycoproteins			N-glycan structures on glycoproteins can be modified based on the addition or removal of specific N-glycan residues, some of which have been linked to liver diseases.
35989034	4	12	gly	glycoprotein	976:987	arg1	bicinchoninic acid protein and glycoprotein carbohydrate assays				bicinchoninic acid protein and glycoprotein carbohydrate assays						The purified dextran-BSA conjugate solution is heated to above the BSA denaturation temperature (80 °C) at pH 5.2 to form nanogels with a hydrodynamic diameter of 195-400 nm, with the size dependent on the conjugate composition estimated by bicinchoninic acid protein and glycoprotein carbohydrate assays.
37387335	10	26	gly	used	1430:1433	arg2	PASP/CMPP composites			PASP/CMPP composites						composites	More importantly, PASP/CMPP composites are expected to be used as a new kind of environmental adsorbent for wastewater treatment.
36699698	4	22	gly	glycoprotein	1063:1074	arg1	the steady-state oligomannosidic glycoprotein load	the steady-state oligomannosidic glycoprotein load				Fterm		glycoprotein			Here, using a custom workflow employing a combination of glycomics and deglycoproteomics analyses, using lectin affinity and selective Endoglycosidase H (Endo H) digestion, we scrutinize the steady-state oligomannosidic glycoprotein load and delineate ESP fraction in melanoma cells.
35137077	2	91	gly	found	398:402	arg1	HMOs AND the major monosaccharide	HMOs			the major monosaccharide	OGER		HMOs	P00540		$\text{L} $-Fucose is the major monosaccharide in the polysaccharide fucoidan from cell walls of brown algae and is found in human milk oligosaccharides (HMOs) and the Lewis blood group system, where it is important in cell signaling and immune response stimulation.
35348624	3	37	gly	leucine-rich	368:379	arg1	Small leucine-rich proteoglycans			leucine	Small leucine-rich proteoglycans					leucine	Small leucine-rich proteoglycans (SLRPs) regulate structural fiber assembly in the cervical ECM and overall tissue material properties.
37388683	2	18	gly	glycosylation	265:277	arg2	glycosylation sites			glycosylation sites						sites	In contrast, mutations in glycosylation sites across SARS-CoV-2 variants are very rare, making glycans a potential robust target for developing antivirals.
35841754	10	7	gly	glycosylation	1537:1549	arg1	naringenin	naringenin				Fterm		naringenin			Moreover, greater glycosylation of naringenin reduces its inhibitory potency against OATP1A2.
37245764	6	25	gly	utilized	1370:1377	arg2	The CMC-PAE/BC Kombucha nanocomposite			The CMC-PAE/BC Kombucha nanocomposite						nanocomposite	The CMC-PAE/BC Kombucha nanocomposite has additionally been utilized to pack red grapes and plums.
36478634	2	21	gly	containing	400:409	arg1	CSE AND 4S,6S	CSE			4S,6S	PUBTATOR		CSE	1433		CSA containing mainly 4-O-monosulfated GalNAc was a good substrate for the enzyme, but not CSE containing mainly 4,6-O-disulfated GalNAc [GalNAc(4S,6S)].
36478634	2	21	gly	containing	400:409	arg1	CSE AND 4,6-O-disulfated GalNAc [GalNAc	CSE			4,6-O-disulfated GalNAc [GalNAc	PUBTATOR		CSE	1433		CSA containing mainly 4-O-monosulfated GalNAc was a good substrate for the enzyme, but not CSE containing mainly 4,6-O-disulfated GalNAc [GalNAc(4S,6S)].
36478634	2	100	gly	containing	309:318	arg1	CSA AND mainly 4-O-monosulfated GalNAc	CSA			mainly 4-O-monosulfated GalNAc	PUBTATOR		CSA	1442		CSA containing mainly 4-O-monosulfated GalNAc was a good substrate for the enzyme, but not CSE containing mainly 4,6-O-disulfated GalNAc [GalNAc(4S,6S)].
36925480	5	22	gly	proteins	941:948	arg1	a high O-glycan occurrence	proteins			a high O-glycan occurrence	Fterm		proteins			Mapping the substrate preference revealed multiple hydrolytic sites of proteins with a high O-glycan occurrence, although hydrolysis was not dependent on the presence of O-glycans.
36526855	7	4	gly	N-glycosylated	1261:1274	arg1	the prothrombin	the prothrombin				PUBTATOR		prothrombin	2147		This indicates that, in contrast to human prothrombin, which has only 7-kDa N-glycans, the prothrombin of the shark is highly N-glycosylated.
36380061	1	21	gly	used	221:224	arg2	the composite			the composite						composite	In the present work, the composite cross-linked were used to consolidate the dyed paper manuscripts.
36478634	4	12	gly	units	682:686	arg1	CSE	CSE			units	PUBTATOR		CSE	1433		Disaccharide composition analysis of digested products revealed that mono-sulfated disaccharide units in CSE contributed to the enzyme reactivity.
36478634	1	22	gly	residues	205:212	arg1	CS	CS			residues	PUBTATOR		CS	1431		O-sulfated N-acetyl-d-galactosamine (GalNAc) residues in chondroitin sulfate (CS) play a crucial role in chondroitinase ABC I (cABC-I) activity.
35704413	8	62	gly	used	1250:1253	arg2	Al2O3/CA composite			Al2O3/CA composite						composite	This study demonstrated that Al2O3/CA composite has better adsorption capacity and can be used in the dynamic adsorption system as a promising approach for phosphate removal from water.
36417571	10	46	gly	receptors	1162:1170	arg1	compositions			compositions						positions	In other words, the authors can map out the cells susceptible to virus infection in terms of receptors and proteoglycans compositions.
37014823	5	25	gly	glycoproteins	737:749	arg1	glycoproteins	glycoproteins			exposed sugars	Fterm		glycoproteins			The intestinal mucous layer (encompassing both the glycocalyx and the secreted mucous layer) has a chemical composition that fits well with NADES (e.g., glycoproteins with exposed sugars, amino sugars, and amino acids like proline and threonine, as well as quaternary amines like choline and ethanolamine and organic acids like citric and malic acid).
37014823	5	25	gly	glycoproteins	737:749	arg1	glycoproteins	glycoproteins			amino sugars	Fterm		glycoproteins			The intestinal mucous layer (encompassing both the glycocalyx and the secreted mucous layer) has a chemical composition that fits well with NADES (e.g., glycoproteins with exposed sugars, amino sugars, and amino acids like proline and threonine, as well as quaternary amines like choline and ethanolamine and organic acids like citric and malic acid).
36510012	7	21	gly	microbiota	1121:1130	arg1	composition			composition						position,	We measured the impacts of these exposures on glycemia, the lipid profile, and the microbiota (composition, metabolite production, and translocation into tissues).
36087961	2	42	gly	used	374:377	arg2	Zr4+ cross-linked chitosan-thiourea (CS-thiourea-Zr) composite			Zr4+ cross-linked chitosan-thiourea (CS-thiourea-Zr) composite						composite	In this work, Zr4+ cross-linked chitosan-thiourea (CS-thiourea-Zr) composite was synthesized for the first time and used to remove Cr(VI).
36699698	5	51	gly	glycosite	1183:1191	arg2	glycosite			glycosite						glycosite	All of these were assessed by applying our workflow for glycosite relative quantification of both the peptide chain and carbohydrate structure in cells with inhibited activity of class I mannosidases after kifunensine treatment.
36587130	1	0	gly	glycoproteins	162:174	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			The extracellular matrix (ECM) is a molecular scaffold mainly comprising fibrous proteins, glycoproteins, proteoglycans, and polysaccharides.
36122434	2	11	gly	used	361:364	arg2	The composite			The composite						composite	The composite was packed in the syringe barrel and used as the sorbent for microextraction in packed syringe.
37014823	6	22	gly	glycoproteins	992:1004	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			Various studies have indeed shown that amylase binds to glycoproteins within the mucous layer of the small intestine where it performs its digestive action.
37201514	9	6	gly	presence	1436:1443	arg1	the nanocomposite AND glucosamine sulfate			the nanocomposite	glucosamine sulfate					nanocomposite	Fourier Transform Infrared spectroscopy (FTIR) analysis showed the presence of keratin, chitosan, and glucosamine sulfate in the nanocomposite and remained intact.
36925480	6	78	gly	glycoproteins	1165:1177	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			However, since proteolysis of immunoglobulins was absent, and general protease activity was low, a preference for glycoproteins similar to MUC5B in terms of glycosylation and structure is suggested.
36925480	1	10	gly	glycoprotein	132:143	arg1	the predominant glycoprotein	the predominant glycoprotein				Fterm		glycoprotein			MUC5B is the predominant glycoprotein in saliva and is instrumental in the establishment and maintenance of multi-species eubiotic biofilms in the oral cavity.
36925480	1	10	gly	glycoprotein	132:143	arg1	MUC5B	MUC5B				OGER		MUC5B	Q9HC84		MUC5B is the predominant glycoprotein in saliva and is instrumental in the establishment and maintenance of multi-species eubiotic biofilms in the oral cavity.
36478634	10	48	gly	[GlcAβ1-3GalNAc	1585:1599	arg1	CS	CS			[GlcAβ1-3GalNAc	PUBTATOR		CS	1431		When interacting with the CSE-disaccharide unit [GlcAβ1-3GalNAc(4S,6S)] in CS, cABC-I cannot interact with other CS-disaccharide units until it has digested the CSE-disaccharide unit.