doc_id sent_index relation_id relation trigger trigger_offset arg_num arg_base_np arg_protein arg_domain arg_site arg_sugar PSource SiteSource NProtein NID SiteName sent_text 33539901 10 47 gly sialylated 2240:2249 arg1 sialylated antennae sialylated antennae These findings strongly suggest that hCTP enhances the in vivo biological activity of recombinant Japanese eel Gths due to the high abundance of O-linked glycans with sialylated antennae. 33295623 4 12 gly α-dystroglycan 602:615 arg1 an unmodified peptide Ac- PPTTTTKKP-NH2 sequence an unmodified peptide Ac- PPTTTTKKP-NH2 sequence an unmodified peptide Ac- PPTTTTKKP-NH2 sequence Site sequence Comparing the results for an unmodified peptide Ac- PPTTTTKKP-NH2 sequence from α-dystroglycan, and glycoconjugates with either modification on the Ts, we find that the impact of the α-O-Man modification on the peptide scaffold is quite limited, while that of the α-O-GalNAc is more profound. 33363672 10 100 gly glycopeptides 1704:1716 arg2 several IgA glycopeptides several IgA glycopeptides glycopeptides Partial cysteine oxidation was identified as an unexpectedly abundant peptide modification and impaired the automated processing of several IgA glycopeptides. 33149259 8 38 gly glycoforms 1401:1410 arg1 these main PSA glycoforms these main PSA glycoforms PUBTATOR PSA 354 The identification of these main PSA glycoforms altered in aggressive PCa opens the way to design specific strategies to target them, which will be useful to improve PCa risk stratification. 33068039 0 77 gly glycoprotein 51:62 arg1 Machupo virus glycoprotein Machupo virus glycoprotein Fterm glycoprotein Tuning the binding interface between Machupo virus glycoprotein and human transferrin receptor. 32310329 0 56 gly O-glycosylation 21:35 arg1 human coagulation factor V. BACKGROUND/OBJECTIVE Coagulation factor V human coagulation factor V. BACKGROUND/OBJECTIVE Coagulation factor V PUBTATOR Coagulation factor V 2153 Comprehensive N- and O-glycosylation mapping of human coagulation factor V. BACKGROUND/OBJECTIVE Coagulation factor V (FV), a multidomain glycoprotein, is an essential cofactor in the blood clotting cascade. 32310329 0 56 gly O-glycosylation 21:35 arg1 FV FV Cterm FV 2153 Comprehensive N- and O-glycosylation mapping of human coagulation factor V. BACKGROUND/OBJECTIVE Coagulation factor V (FV), a multidomain glycoprotein, is an essential cofactor in the blood clotting cascade. 32310329 0 67 gly glycoprotein 138:149 arg1 a multidomain glycoprotein a multidomain glycoprotein Fterm glycoprotein Comprehensive N- and O-glycosylation mapping of human coagulation factor V. BACKGROUND/OBJECTIVE Coagulation factor V (FV), a multidomain glycoprotein, is an essential cofactor in the blood clotting cascade. 33301522 1 1 gly N-glycopeptide 181:194 arg2 Native intact N-glycopeptide analysis Native intact N-glycopeptide analysis N-glycopeptide Native intact N-glycopeptide analysis can provide access to the comprehensive characteristics of N-glycan occupancy, including N-glycosites, N-glycan compositions, and N-glycoproteins for complex samples. 33301522 1 24 gly N-glycoproteins 335:349 arg1 N-glycoproteins N-glycoproteins Fterm N-glycoproteins Native intact N-glycopeptide analysis can provide access to the comprehensive characteristics of N-glycan occupancy, including N-glycosites, N-glycan compositions, and N-glycoproteins for complex samples. 33301522 1 39 gly N-glycosites 294:305 arg2 N-glycosites N-glycosites N-glycosites Native intact N-glycopeptide analysis can provide access to the comprehensive characteristics of N-glycan occupancy, including N-glycosites, N-glycan compositions, and N-glycoproteins for complex samples. 31967953 8 49 gly A4α 837:839 arg1 l-Lys-Gly-l-Glu l-Lys-Gly-l-Glu Glu The peptidoglycan type of RB2T was A4α, l-Lys-Gly-l-Glu. 35141446 3 48 gly glycosylation 733:745 arg2 the O-linked glycosylation sites the O-linked glycosylation sites sites To identify the specific biological functions of glycosylated sites in eCG, we constructed the following site mutants of N- and O-linked glycosylation: eCGβ/αΔ56, substitution of α-subunit56 N-linked glycosylation site; eCGβ-D/α, deletion of the O-linked glycosylation sites at the β-subunit, and eCGβ-D/αΔ56, double mutant. 35141446 3 72 gly glycosylated 527:538 arg1 glycosylated sites glycosylated sites sites To identify the specific biological functions of glycosylated sites in eCG, we constructed the following site mutants of N- and O-linked glycosylation: eCGβ/αΔ56, substitution of α-subunit56 N-linked glycosylation site; eCGβ-D/α, deletion of the O-linked glycosylation sites at the β-subunit, and eCGβ-D/αΔ56, double mutant. 35141446 3 99 gly glycosylation 678:690 arg2 α-subunit56 N-linked glycosylation site α-subunit56 N-linked glycosylation site site To identify the specific biological functions of glycosylated sites in eCG, we constructed the following site mutants of N- and O-linked glycosylation: eCGβ/αΔ56, substitution of α-subunit56 N-linked glycosylation site; eCGβ-D/α, deletion of the O-linked glycosylation sites at the β-subunit, and eCGβ-D/αΔ56, double mutant. 34118572 4 38 gly composition 1202:1212 arg1 monosaccharide composition position monosaccharide composition position It was found that the molecular weight range and monosaccharide composition of polysaccharides, as well as the composition of small molecules, were identical between MHD and cSHD. 34123172 5 11 gly glycosylation 984:996 arg2 glycosylation sites glycosylation sites sites In addition, the large set of binding data collected allows us to examine the relationship between binding affinity and the correlation in motion between pairs of glycosylation sites. 33068039 3 61 gly glycoprotein 610:621 arg1 glycoprotein sequence homology glycoprotein sequence homology Fterm glycoprotein Study of the experimental structure of Machupo virus glycoprotein 1 (MGP1) in complex with TfR and glycoprotein sequence homology has identified some residues at the interface that influence binding. 33068039 3 65 gly glycoprotein 564:575 arg1 Machupo virus glycoprotein 1 Machupo virus glycoprotein 1 Fterm glycoprotein 1 Study of the experimental structure of Machupo virus glycoprotein 1 (MGP1) in complex with TfR and glycoprotein sequence homology has identified some residues at the interface that influence binding. 33068039 3 65 gly glycoprotein 564:575 arg1 MGP1 MGP1 Cterm MGP1 Study of the experimental structure of Machupo virus glycoprotein 1 (MGP1) in complex with TfR and glycoprotein sequence homology has identified some residues at the interface that influence binding. 33231591 0 135 gly composition 116:126 arg1 a high-fat fructose-rich diet position a high-fat fructose-rich diet position Effects of dietary fibre and protein content on intestinal fibre degradation, short-chain fatty acid and microbiota composition in a high-fat fructose-rich diet induced obese Göttingen Minipig model. 34298952 5 44 gly glycoproteins 1055:1067 arg1 glycoproteins glycoproteins Fterm glycoproteins In the current work, we applied two plant lectins capable of distinguishing glycoepitopes with terminal GalNAc and Gal to identify glycoproteins that are their efficient carriers. 32672838 1 47 gly glycosylated 310:321 arg1 the heavily glycosylated α-1-acid glycoprotein the heavily glycosylated α-1-acid glycoprotein Cterm α-1-acid The reactivity of a range of Keggin and Wells-Dawson type heteropolyacids (HPAs): H3 PW12 O40 H4 SiW12 O40 , H3 PMo12 O40 , K6 P2 W18 O62 , and NaH2 W12 O4 , towards the heavily glycosylated α-1-acid glycoprotein (AGP) is reported. 32672838 1 49 gly glycoprotein 332:343 arg1 the heavily glycosylated α-1-acid glycoprotein the heavily glycosylated α-1-acid glycoprotein Cterm α-1-acid The reactivity of a range of Keggin and Wells-Dawson type heteropolyacids (HPAs): H3 PW12 O40 H4 SiW12 O40 , H3 PMo12 O40 , K6 P2 W18 O62 , and NaH2 W12 O4 , towards the heavily glycosylated α-1-acid glycoprotein (AGP) is reported. 35116628 5 58 gly NRG1 823:826 arg1 the protein fucosylation level NRG1 the protein fucosylation level PUBTATOR NRG1 3084 Then Aleuria aurantia lectin (AAL) ELISA was performed according to ELISA index to test the protein fucosylation level of NRG1 (Fuc-NRG1). 34516313 0 73 gly polysialylated 82:95 arg1 novel polysialylated structures novel polysialylated structures High-resolution mass spectrometry reveals a complex ganglioside pattern and novel polysialylated structures associated with the human motor cortex. 33103831 6 61 gly glycosylated 1220:1231 arg1 the O-linked and N-linked glycosylated proteins the O-linked and N-linked glycosylated proteins Fterm proteins The CEST contribution can be attributed to several phosphorylated products of GlcN, including uridine diphosphate-N-acetylglucosamine (UDP-GlcNAc), which is a substrate for the O-linked and N-linked glycosylated proteins that may be associated with the increase of the NOE signal. 32310329 5 11 gly glycopeptides 841:853 arg2 glycopeptides glycopeptides glycopeptides METHODS In this study, we comprehensively mapped the glycosylation patterns of human plasma-derived FV by combining multienzyme digestion, hydrophilic interaction chromatography enrichment of glycopeptides, and alternated fragmentation mass spectrometry analysis. 32310329 5 18 gly glycosylation 702:714 arg1 human plasma-derived FV human plasma-derived FV Cterm FV 2153 METHODS In this study, we comprehensively mapped the glycosylation patterns of human plasma-derived FV by combining multienzyme digestion, hydrophilic interaction chromatography enrichment of glycopeptides, and alternated fragmentation mass spectrometry analysis. 32862508 6 22 gly fucosylated 1069:1079 arg1 unique fucosylated LacdiNAc-extended N-linked and O-linked glycans unique fucosylated LacdiNAc-extended N-linked and O-linked glycans Furthermore, mass spectroscopy revealed the existence of unique fucosylated LacdiNAc-extended N-linked and O-linked glycans in the gill tissues, whereas beta-elimination experiments showed that MrNV-VLPs demonstrated a binding preference for N-glycans. 33149259 7 15 gly sialylated 1067:1076 arg1 blood serum PSA sialylated glycoforms blood serum PSA sialylated glycoforms The results showed that blood serum PSA sialylated glycoforms containing GalNAc residues were largely increased in aggressive PCa patients, whereas the disialylated core fucosylated biantennary structures with α2,6-SA, which are the major PSA glycoforms in standard PSA from healthy individuals, were markedly reduced in aggressive PCa. 33149259 7 52 gly glycoforms 1078:1087 arg1 blood serum PSA blood serum PSA The results showed that blood serum PSA sialylated glycoforms containing GalNAc residues were largely increased in aggressive PCa patients, whereas the disialylated core fucosylated biantennary structures with α2,6-SA, which are the major PSA glycoforms in standard PSA from healthy individuals, were markedly reduced in aggressive PCa. 33149259 7 79 gly glycoforms 1270:1279 arg1 the major PSA glycoforms the major PSA glycoforms PUBTATOR PSA 354 The results showed that blood serum PSA sialylated glycoforms containing GalNAc residues were largely increased in aggressive PCa patients, whereas the disialylated core fucosylated biantennary structures with α2,6-SA, which are the major PSA glycoforms in standard PSA from healthy individuals, were markedly reduced in aggressive PCa. 33149259 7 89 gly fucosylated 1197:1207 arg1 the disialylated core fucosylated biantennary structures the disialylated core fucosylated biantennary structures The results showed that blood serum PSA sialylated glycoforms containing GalNAc residues were largely increased in aggressive PCa patients, whereas the disialylated core fucosylated biantennary structures with α2,6-SA, which are the major PSA glycoforms in standard PSA from healthy individuals, were markedly reduced in aggressive PCa. 33149259 7 90 gly disialylated 1179:1190 arg1 the disialylated core fucosylated biantennary structures the disialylated core fucosylated biantennary structures The results showed that blood serum PSA sialylated glycoforms containing GalNAc residues were largely increased in aggressive PCa patients, whereas the disialylated core fucosylated biantennary structures with α2,6-SA, which are the major PSA glycoforms in standard PSA from healthy individuals, were markedly reduced in aggressive PCa. 32885950 4 11 gly used 817:820 arg2 ketone-d-Met ketone-d-Met Met Newly synthesized azide-d-Leu and ketone-d-Met were used together with alkynyl-d-Ala for their metabolic assembly and then bioorthogonally encoded by the correspondingly fabricated DBCO-DOTA-Gd, HNO-DOTA-Eu, and azide-DOTA-Sm tags. 32885950 4 11 gly used 817:820 arg2 Newly synthesized azide-d-Leu Newly synthesized azide-d-Leu Leu Newly synthesized azide-d-Leu and ketone-d-Met were used together with alkynyl-d-Ala for their metabolic assembly and then bioorthogonally encoded by the correspondingly fabricated DBCO-DOTA-Gd, HNO-DOTA-Eu, and azide-DOTA-Sm tags. 32442573 8 10 gly used 1251:1254 arg2 MGCH nanocomposite MGCH nanocomposite nanocomposite This work proves that MGCH nanocomposite can be used as high-performance adsorbent for removing of phenolic pollutants from contaminated wastewater. 35141446 8 96 gly glycosylation 1452:1464 arg2 O-linked glycosylation sites O-linked glycosylation sites sites Our results indicate that the biological activity of eCG is greatly affected by the removal of N- and O-linked glycosylation sites in cells expressing eLH/CGR. 32752259 4 46 gly glycoproteins 676:688 arg1 the major MGL-binding glycoproteins the major MGL-binding glycoproteins Fterm glycoproteins We had recently identified the major MGL-binding glycoproteins in two high-MGL-binding CRC cells lines, HCT116 and HT29. 33572881 6 52 gly sialylated 985:994 arg1 several fucosylated and sialylated HMOs several fucosylated and sialylated HMOs OGER HMOs P00540 Maternal obesity was associated with lower concentrations of several fucosylated and sialylated HMOs and infants born to women with obesity had lower intakes of these HMOs. 33572881 6 57 gly fucosylated 969:979 arg1 several fucosylated and sialylated HMOs several fucosylated and sialylated HMOs OGER HMOs P00540 Maternal obesity was associated with lower concentrations of several fucosylated and sialylated HMOs and infants born to women with obesity had lower intakes of these HMOs. 32862508 0 63 gly fucosylated 67:77 arg1 fucosylated glycans fucosylated glycans Macrobrachium rosenbergii nodavirus virus-like particles attach to fucosylated glycans in the gills of the giant freshwater prawn. 34015001 2 26 gly Factor 424:429 arg1 the pectin binding Wall associated Kinases Factor (EGF the pectin binding Wall associated Kinases OGER Factor (EGF P01133 Cell adhesion in Arabidopsis may also be regulated through a pectin-related signaling cascade mediated by a putative O-fucosyltransferase ESMERALDA1 (ESMD1), and the Epidermal Growth Factor (EGF) domains of the pectin binding Wall associated Kinases (WAKs) are a primary candidate substrate for ESMD1 activity. 33821278 8 33 gly glycosylation 1320:1332 arg2 Three incompletely occupied sites Three incompletely occupied sites sites Three incompletely occupied sites of O-linked glycosylation were detected. 34065932 0 52 gly Pectin 43:48 arg1 Residual Cell Wall Material Pectin Residual Cell Wall Material Fterm Pectin The Structure and Composition of Extracted Pectin and Residual Cell Wall Material from Processing Tomato: The Role of a Stepwise Approach versus High-Pressure Homogenization-Facilitated Acid Extraction. 33125241 3 72 gly glycopeptides 599:611 arg2 glycopeptides glycopeptides glycopeptides Despite its utility, HILIC enrichment is associated with a number of shortcomings, including requiring large amounts of starting materials, potentially introducing chemical artifacts such as formylation when high concentrations of formic acid are used, and biasing/undersampling specific classes of glycopeptides. 33539901 5 15 gly acids 1251:1255 arg1 rGth-hCTPs rGth-hCTPs acids OGER rGth-hCTPs P17812 Further analyses of glycans by liquid chromatography-mass spectrometry suggested that the species, amount, and degree of sialylation of N-glycans were comparable among recombinant Fshs and recombinant Lhs, while the amount of O-glycans with sialic acids in rGth-hCTPs was higher than that in the corresponding rGth-eCTPs. 33539901 5 74 gly sialylation 1124:1134 arg1 N-glycans N-glycans Further analyses of glycans by liquid chromatography-mass spectrometry suggested that the species, amount, and degree of sialylation of N-glycans were comparable among recombinant Fshs and recombinant Lhs, while the amount of O-glycans with sialic acids in rGth-hCTPs was higher than that in the corresponding rGth-eCTPs. 34013301 2 13 gly protein 348:354 arg1 N-linked glycans Spike protein N-linked glycans PUBTATOR Spike protein 43740568 Cross-reactive antibodies specifically recognized the sialic acid moiety on N-linked glycans of the Spike protein and do not neutralize in vitro SARS-CoV-2. 33909078 1 34 gly glycoproteins 287:299 arg1 glycoproteins glycoproteins N- Fterm glycoproteins In the fission yeast Schizosaccharomyces pombe, α1,2- and α1,3-linked D-galactose (Gal) residues are transferred to N- and O-linked oligosaccharides of glycoproteins by galactosyltransferases. 33909078 1 34 gly glycoproteins 287:299 arg1 glycoproteins glycoproteins O-linked oligosaccharides Fterm glycoproteins In the fission yeast Schizosaccharomyces pombe, α1,2- and α1,3-linked D-galactose (Gal) residues are transferred to N- and O-linked oligosaccharides of glycoproteins by galactosyltransferases. 34712749 7 87 gly glycoproteins 1324:1336 arg1 glycoproteins glycoproteins non-matured N-glycans Fterm glycoproteins This allowed us to map the fraction of glycoproteins with non-matured N-glycans from A375 melanoma cells and find or validate N-glycosylation sites of proteins from the secretory pathway. 34712749 7 78 gly N-glycosylation 1411:1425 arg2 N-glycosylation sites proteins sites Fterm proteins sites This allowed us to map the fraction of glycoproteins with non-matured N-glycans from A375 melanoma cells and find or validate N-glycosylation sites of proteins from the secretory pathway. 34318377 2 45 gly used 518:521 arg2 The resultant composite The resultant composite composite The resultant composite was used as an effective and novel sorbent for pipette-tip micro-solid phase extraction (PT-μSPE) of seven opioid analgesics (OAs) in biological samples followed by HPLC-UV analysis. 33535571 4 59 gly α2,3-/α2,6-sialylated 955:975 arg1 α2,3-/α2,6-sialylated structures α2,3-/α2,6-sialylated structures In total, 62 N-glycan isomers spanning 41 glycan compositions primarily comprising complex-type core fucosylated, bisecting N-acetylglucosamine (GlcNAc), and α2,3-/α2,6-sialylated structures were profiled across all samples using label-free quantitation. 33404253 6 91 gly N-glycosylation 1320:1334 arg2 N-glycosylation motifs N-glycosylation motifs motifs The comparative glycoproteomic analysis of B. alcatraz venom with B. jararaca and B. insularis indicated that there may be differences in the utilization of N-glycosylation motifs among their different toxin classes. 32065575 7 38 gly had 614:616 arg1 The strain AND cell wall peptidoglycan type A3α l-Lys-Gly The strain cell wall peptidoglycan type A3α l-Lys-Gly Fterm strain The strain had cell wall peptidoglycan type A3α l-Lys-Gly. 32376684 3 58 gly N-glycosylation 595:609 arg2 N-glycosylation sites N-glycosylation sites sites Here, we identified N-glycosylation sites in mouse EOGT and elucidated their molecular functions. 32885670 1 43 gly used 170:173 arg2 The carbon isotopic composition The carbon isotopic composition position The carbon isotopic composition (δ13C) of foliage is often used as proxy for plant performance. 33149259 0 39 gly glycoforms 33:42 arg1 the main PSA glycoforms the main PSA glycoforms PUBTATOR PSA 354 Characterisation of the main PSA glycoforms in aggressive prostate cancer. 33942129 1 51 gly glycoproteins 181:193 arg1 N-linked and O-linked glycoproteins N-linked and O-linked glycoproteins Fterm glycoproteins BACKGROUND Galectins are proteins that bind β-galactosides such as N-acetyllactosamine present in N-linked and O-linked glycoproteins and that seem to be implicated in inflammatory and immune responses as well as fibrotic mechanisms. 33942129 1 55 gly present 148:154 arg1 N-linked and O-linked glycoproteins AND N-acetyllactosamine N-linked and O-linked glycoproteins N-acetyllactosamine Fterm glycoproteins BACKGROUND Galectins are proteins that bind β-galactosides such as N-acetyllactosamine present in N-linked and O-linked glycoproteins and that seem to be implicated in inflammatory and immune responses as well as fibrotic mechanisms. 34602421 2 39 gly composition 372:382 arg1 Crude Monkshood Polysaccharide position Crude Monkshood Polysaccharide position In the present study, Crude Monkshood Polysaccharide (CMP), another one natural composition component originated from the same herbal with aconitine, combined with aconitine to investigate the effects on HCC and immunity in vitro and in vivo. 31924694 6 10 gly N-glycopeptides 1295:1309 arg2 these N-glycopeptides these N-glycopeptides N-glycopeptides Comparison of these N-glycopeptides revealed striking differences in protein N-glycosylation between sexes. 32841408 2 45 gly Glycosylation 238:250 arg1 rhuEPO rhuEPO Cterm rhuEPO 2056 Glycosylation of rhuEPO was crucial for affecting biological activity, immunogenicity, and pharmacokinetics. 33090600 0 12 gly Impact 100:105 arg1 a Lewis X Type DC-SIGN Ligand Impact a Lewis X Type DC-SIGN Ligand OGER Impact Q9P2X3 Synthesis of Asparagine Derivatives Harboring a Lewis X Type DC-SIGN Ligand and Evaluation of their Impact on Immunomodulation in Multiple Sclerosis. 32459612 5 7 gly sialylated 1099:1108 arg1 the sialylated receptor the sialylated receptor Fterm receptor Virus infectivity data from RP19 cells treated with sodium periodate, proteases (trypsin or bromelain) or metabolic inhibitors (dl-threo-1-phenyl-2-decanoylamino-3-morpholino-1-propanol, tunicamycin, or benzyl N-acetyl-α-d-galactosaminide) indicated that N-linked, but not O-linked, carbohydrates are part of the sialylated receptor and they are likely based on a membrane glycoprotein, rather than a glycolipid. 32459612 5 11 gly glycoprotein 1159:1170 arg1 a membrane glycoprotein a membrane glycoprotein Fterm glycoprotein Virus infectivity data from RP19 cells treated with sodium periodate, proteases (trypsin or bromelain) or metabolic inhibitors (dl-threo-1-phenyl-2-decanoylamino-3-morpholino-1-propanol, tunicamycin, or benzyl N-acetyl-α-d-galactosaminide) indicated that N-linked, but not O-linked, carbohydrates are part of the sialylated receptor and they are likely based on a membrane glycoprotein, rather than a glycolipid. 32459612 5 70 gly receptor 1110:1117 arg1 N-linked, but not O-linked, carbohydrates receptor N-linked, but not O-linked, carbohydrates Fterm receptor Virus infectivity data from RP19 cells treated with sodium periodate, proteases (trypsin or bromelain) or metabolic inhibitors (dl-threo-1-phenyl-2-decanoylamino-3-morpholino-1-propanol, tunicamycin, or benzyl N-acetyl-α-d-galactosaminide) indicated that N-linked, but not O-linked, carbohydrates are part of the sialylated receptor and they are likely based on a membrane glycoprotein, rather than a glycolipid. 32195245 2 33 gly Glycosylation 207:219 arg1 the IgG fragment crystallizable (Fc) region the IgG fragment crystallizable (Fc) region region Glycosylation of the IgG fragment crystallizable (Fc) region is shown to vary in different physiological and pathological states. 33821278 5 85 gly glycoprotein 793:804 arg1 a wild-type SARS-CoV-2 S glycoprotein trimer a wild-type SARS-CoV-2 S glycoprotein trimer PUBTATOR S glycoprotein 43740568 We used a fucose-selective lectin to enrich the Golgi-resident fraction of a wild-type SARS-CoV-2 S glycoprotein trimer, and determined its glycosylation and disulfide bond profile. 33363672 4 57 gly glycopeptide 653:664 arg2 a robust glycopeptide detection a robust glycopeptide detection glycopeptide Here, a selection of these tools was combined and evaluated with the aim of establishing a robust glycopeptide detection and quantification workflow targeting enriched glycoproteins. 33363672 4 99 gly glycoproteins 723:735 arg1 workflow targeting enriched glycoproteins workflow targeting enriched glycoproteins Fterm glycoproteins Here, a selection of these tools was combined and evaluated with the aim of establishing a robust glycopeptide detection and quantification workflow targeting enriched glycoproteins. 33149259 4 45 gly sialylated 616:625 arg1 the main sialylated PSA glycoforms the main sialylated PSA glycoforms In this study, we have characterised the main sialylated PSA glycoforms from blood serum of aggressive PCa patients and have compared with those of standard PSA from healthy individuals' seminal plasma. 33149259 4 60 gly glycoforms 631:640 arg1 the main sialylated PSA glycoforms the main sialylated PSA glycoforms In this study, we have characterised the main sialylated PSA glycoforms from blood serum of aggressive PCa patients and have compared with those of standard PSA from healthy individuals' seminal plasma. 33539901 4 18 gly sialylated 965:974 arg1 highly sialylated O-linked oligosaccharides highly sialylated O-linked oligosaccharides In contrast, only rGth-hCTPs and rGth-eCTPs possessed highly sialylated O-linked oligosaccharides. 33539901 4 8 gly possessed 948:956 arg1 rGth-hCTPs AND highly sialylated O-linked oligosaccharides rGth-hCTPs highly sialylated O-linked oligosaccharides OGER rGth-hCTPs P17812 In contrast, only rGth-hCTPs and rGth-eCTPs possessed highly sialylated O-linked oligosaccharides. 32781127 10 12 gly occupied 2368:2375 arg2 the bone defect site the bone defect site site Microscopic computed tomography (micro-CT) results demonstrated that the bone defect site was nearly occupied with newly formed bone at 12 weeks after implantation of EHSS/HAp with 70% SPI content into the defect. 34684428 3 101 gly glycoproteins 661:673 arg1 glycoproteins glycoproteins Fterm glycoproteins Therefore, the main objective of the proposed research is to investigate how the intestinal microbiota of preterm and full-term infants differ in their ability to extract energy and nutrients from oligosaccharides and glycoproteins in human milk. 31961287 5 71 gly anteiso-C15  811:822 arg1 anteiso-C17  anteiso-C17  nov Q9UIW2 C17  The peptidoglycan contains meso-diaminopimelic acid (mDAP) and the predominant fatty acids are anteiso-C15 : 0 (61.9 %) and anteiso-C17 : 0 (11.6 %), confirming that strain MS2379T has diagnostic features of other Paenibacillus species. 33301522 5 55 gly N-glycopeptides 1197:1211 arg2 intact N-glycopeptides intact N-glycopeptides N-glycopeptides Finally, we found that the combination of Trypsin (B)/Lys-C digestion and zwitterionic HILIC (Zic-HILIC) enrichment significantly improved the mass spectrometric characterization of intact N-glycopeptides, increasing the number of identified intact N-glycopeptides and offering better analytical reproducibility. 33301522 5 70 gly N-glycopeptides 1257:1271 arg2 identified intact N-glycopeptides identified intact N-glycopeptides N-glycopeptides Finally, we found that the combination of Trypsin (B)/Lys-C digestion and zwitterionic HILIC (Zic-HILIC) enrichment significantly improved the mass spectrometric characterization of intact N-glycopeptides, increasing the number of identified intact N-glycopeptides and offering better analytical reproducibility. 35126378 7 32 gly D-Ala 1236:1240 arg1 D-Ala L. plantarum peptidoglycan precursors Ala D-Ala L. plantarum peptidoglycan precursors Ala We further explored the regulation of the macrophage inflammatory response pathway by the wild-type and constructed strains, and found that these strains induced the MyD88-dependent TRAF6/MAPK pathway, and the increase in D-Ala L. plantarum peptidoglycan precursors increased the secretion of the inflammatory factors IL-6, IL-1β and TNF-α. 34360993 8 51 gly found 1118:1122 arg1 the canonical four N-glycosylation sites AND HexNAc2Hex11 the canonical four N-glycosylation sites HexNAc2Hex11 sites Glycan analysis indicates that predominant glycoforms HexNAc2Hex8 and HexNAc2Hex11 are found at Asn119, Asn378, and Asn743, three of the canonical four N-glycosylation sites of human CP. 34360993 8 51 gly found 1118:1122 arg2 the canonical four N-glycosylation sites AND HexNAc2Hex8 the canonical four N-glycosylation sites HexNAc2Hex8 sites Glycan analysis indicates that predominant glycoforms HexNAc2Hex8 and HexNAc2Hex11 are found at Asn119, Asn378, and Asn743, three of the canonical four N-glycosylation sites of human CP. 34360993 8 51 gly found 1118:1122 arg1 Asn119 AND HexNAc2Hex11 Asn119, Asn378, and Asn743 HexNAc2Hex11 Ceruloplasmin 1356 Asn119, Asn378, and Asn743 Glycan analysis indicates that predominant glycoforms HexNAc2Hex8 and HexNAc2Hex11 are found at Asn119, Asn378, and Asn743, three of the canonical four N-glycosylation sites of human CP. 34360993 8 51 gly found 1118:1122 arg1 Asn378 AND HexNAc2Hex11 Asn119, Asn378, and Asn743 HexNAc2Hex11 Ceruloplasmin 1356 Asn119, Asn378, and Asn743 Glycan analysis indicates that predominant glycoforms HexNAc2Hex8 and HexNAc2Hex11 are found at Asn119, Asn378, and Asn743, three of the canonical four N-glycosylation sites of human CP. 34360993 8 51 gly found 1118:1122 arg1 Asn378 AND HexNAc2Hex11 Asn119, Asn378, and Asn743 HexNAc2Hex11 Ceruloplasmin 1356 Asn119, Asn378, and Asn743 Glycan analysis indicates that predominant glycoforms HexNAc2Hex8 and HexNAc2Hex11 are found at Asn119, Asn378, and Asn743, three of the canonical four N-glycosylation sites of human CP. 34360993 8 51 gly found 1118:1122 arg2 Asn119 AND HexNAc2Hex8 Asn119, Asn378, and Asn743 HexNAc2Hex8 Ceruloplasmin 1356 Asn119, Asn378, and Asn743 Glycan analysis indicates that predominant glycoforms HexNAc2Hex8 and HexNAc2Hex11 are found at Asn119, Asn378, and Asn743, three of the canonical four N-glycosylation sites of human CP. 34360993 8 51 gly found 1118:1122 arg2 Asn378 AND HexNAc2Hex8 Asn119, Asn378, and Asn743 HexNAc2Hex8 Ceruloplasmin 1356 Asn119, Asn378, and Asn743 Glycan analysis indicates that predominant glycoforms HexNAc2Hex8 and HexNAc2Hex11 are found at Asn119, Asn378, and Asn743, three of the canonical four N-glycosylation sites of human CP. 34360993 8 51 gly found 1118:1122 arg2 Asn378 AND HexNAc2Hex8 Asn119, Asn378, and Asn743 HexNAc2Hex8 Ceruloplasmin 1356 Asn119, Asn378, and Asn743 Glycan analysis indicates that predominant glycoforms HexNAc2Hex8 and HexNAc2Hex11 are found at Asn119, Asn378, and Asn743, three of the canonical four N-glycosylation sites of human CP. 34360993 8 72 gly N-glycosylation 1183:1197 arg1 human CP CP sites PUBTATOR CP 1356 sites Glycan analysis indicates that predominant glycoforms HexNAc2Hex8 and HexNAc2Hex11 are found at Asn119, Asn378, and Asn743, three of the canonical four N-glycosylation sites of human CP. 34298952 8 69 gly glycoproteins 1606:1618 arg1 the identified glycoproteins the identified glycoproteins Fterm glycoproteins STRING bioinformatics analysis linked the identified glycoproteins in the close network, indicating their involvement in immune (partially innate) processes. 34482828 6 135 gly glycosylation 1317:1329 arg2 approximately 12 O-linked glycosylation sites approximately 12 O-linked glycosylation sites sites However, the secretion of eCGβ-D/α and eCGβ-D/αΔ56, which lack approximately 12 O-linked glycosylation sites, was slightly delayed. 34863837 4 48 gly glycosylated 744:755 arg1 the protein the protein Fterm protein High-resolution LC-MS analysis indicated that the protein is heterogeneously glycosylated and also contains multiple acetylations, occurring in the attached glycans. 33480676 2 9 gly glycoprotein 517:528 arg1 fetuin fetuin OGER fetuin, a P02765 Taking advantage of boronic acid (BA) based SA-recognition chemistry, we here demonstrate a label-free, no enzymatic, potentiometric determination of fetuin, a blood-circulating glycoprotein implicated in physiological and various pathological states. 33480676 2 9 gly glycoprotein 517:528 arg1 a blood-circulating glycoprotein a blood-circulating glycoprotein Fterm glycoprotein Taking advantage of boronic acid (BA) based SA-recognition chemistry, we here demonstrate a label-free, no enzymatic, potentiometric determination of fetuin, a blood-circulating glycoprotein implicated in physiological and various pathological states. 33301522 3 29 gly N-glycopeptides 648:662 arg2 identified intact N-glycopeptides identified intact N-glycopeptides N-glycopeptides However, the number of identified intact N-glycopeptides remains inadequate to achieve an in-depth profile of the N-glycosylation landscape. 33090600 4 22 gly asparagine 654:663 arg1 an unnatural Lewis X (LeX )-containing Fmoc-SPPS-compatible asparagine building block asparagine an unnatural Lewis X (LeX )-containing Fmoc-SPPS-compatible asparagine building block asparagine Here, we report the synthesis of an unnatural Lewis X (LeX )-containing Fmoc-SPPS-compatible asparagine building block (SPPS=solid-phase peptide synthesis), as well as asparagine building blocks containing two LeX -derived oligosaccharides: LacNAc and Fucα1-3GlcNAc. 33090600 4 59 gly peptide 698:704 arg1 an unnatural Lewis X (LeX )-containing Fmoc-SPPS-compatible asparagine building block an unnatural Lewis X (LeX )-containing Fmoc-SPPS-compatible asparagine building block Here, we report the synthesis of an unnatural Lewis X (LeX )-containing Fmoc-SPPS-compatible asparagine building block (SPPS=solid-phase peptide synthesis), as well as asparagine building blocks containing two LeX -derived oligosaccharides: LacNAc and Fucα1-3GlcNAc. 31830181 4 1 gly used 807:810 arg2 the designed nanocomposite the designed nanocomposite nanocomposite Based on these features, the designed nanocomposite was used as a signal transducer to develop a colorimetric assay and multicolor imaging for accurate and sensitive detection of cancer cells. 33821278 3 91 gly glycoprotein 389:400 arg1 the SARS-CoV-2 S glycoprotein the SARS-CoV-2 S glycoprotein PUBTATOR S glycoprotein 43740568 Approximately 35% of the SARS-CoV-2 S glycoprotein consists of carbohydrate, which can influence virus infectivity and susceptibility to antibody inhibition. 33038510 10 41 gly glycoproteins 1837:1849 arg1 glycoproteins glycoproteins Fterm glycoproteins Glycan alterations on glycoconjugates, such as glycoproteins have emerged as a rich source for the identification of novel cancer markers. 33038510 10 98 gly alterations 1797:1807 arg1 glycoproteins glycoproteins alterations Fterm glycoproteins Glycan alterations on glycoconjugates, such as glycoproteins have emerged as a rich source for the identification of novel cancer markers. 31931062 7 14 gly glycoprotein 1122:1133 arg1 transferrin transferrin OGER transferrin P02787 Isothermal calorimetry showed that compared with rHEL1, rSHL1 interacted more strongly with transferrin, a fucosylated glycoprotein, than with other fucosylated disaccharide glycoconjugates. 31931062 7 14 gly glycoprotein 1122:1133 arg1 a fucosylated glycoprotein a fucosylated glycoprotein Fterm glycoprotein Isothermal calorimetry showed that compared with rHEL1, rSHL1 interacted more strongly with transferrin, a fucosylated glycoprotein, than with other fucosylated disaccharide glycoconjugates. 31931062 7 34 gly fucosylated 1152:1162 arg1 other fucosylated disaccharide glycoconjugates other fucosylated disaccharide glycoconjugates Isothermal calorimetry showed that compared with rHEL1, rSHL1 interacted more strongly with transferrin, a fucosylated glycoprotein, than with other fucosylated disaccharide glycoconjugates. 31931062 7 44 gly fucosylated 1110:1120 arg1 transferrin transferrin OGER transferrin P02787 Isothermal calorimetry showed that compared with rHEL1, rSHL1 interacted more strongly with transferrin, a fucosylated glycoprotein, than with other fucosylated disaccharide glycoconjugates. 31931062 7 44 gly fucosylated 1110:1120 arg1 a fucosylated glycoprotein a fucosylated glycoprotein Fterm glycoprotein Isothermal calorimetry showed that compared with rHEL1, rSHL1 interacted more strongly with transferrin, a fucosylated glycoprotein, than with other fucosylated disaccharide glycoconjugates. 34959902 6 76 gly biosynthesis 1330:1341 arg1 pigs pigs biosynthesis OGER pigs Q96S52 Linear discriminant analysis effect size (LEfSe) in fecal microbiome samples showed differential increases in genera from Lachnospiraceae and Ruminococcaceae families within the order Clostridiales and Erysipelotrichaceae family with a predicted reduction in rgpE-glucosyltransferase protein associated with lipopolysaccharide biosynthesis in pigs fed the FV-supplemented diet. 34904944 7 21 gly IMT-300T 839:846 arg1 The peptidoglycan IMT-300T The peptidoglycan Cterm IMT-300T The peptidoglycan of strain IMT-300T contained l-2,4-diaminobutyric acid as the diagnostic diamino acid. 34298952 2 34 gly glycoproteins 490:502 arg1 Seminal plasma glycoproteins Seminal plasma glycoproteins Fterm glycoproteins Seminal plasma glycoproteins are rich in the unique immunomodulatory glycoepitopes that may serve as ligands for endogenous lectins that decorate the surface of immune cells. 32459612 0 52 gly acid 49:52 arg1 N-linked glycoproteins glycoproteins acid Fterm glycoproteins Turkey adenovirus 3, a siadenovirus, uses sialic acid on N-linked glycoproteins as a cellular receptor. 32459612 0 71 gly glycoproteins 66:78 arg1 N-linked glycoproteins N-linked glycoproteins Fterm glycoproteins Turkey adenovirus 3, a siadenovirus, uses sialic acid on N-linked glycoproteins as a cellular receptor. 33100848 1 18 gly composites 141:150 arg1 Plants polysaccharides composites Plants polysaccharides composites Plants polysaccharides are an infinite stock of drug composites with varying pharmacological and biological activities. 32131144 7 65 gly proteins 1012:1019 arg1 poly(I:C)/D-GalN proteins poly(I:C)/D-GalN Fterm proteins Among 80,195, and 23 specifically-expressed proteins in poly(I:C)/D-GalN, LPS/D-GalN, and CpG DNA/D-GalN groups, LPS/D-GalN-specific proteins are mostly distributed in the endoplasmic reticulum and more enriched in metabolic pathways, whereas poly (I:C)/D-GalN-specific proteins are mainly in the membrane and CpG DNA/D-GalN-specific proteins are related to the ribosome structural composition. 32131144 7 65 gly proteins 1012:1019 arg1 CpG DNA/D-GalN groups proteins CpG DNA/D-GalN groups Fterm proteins Among 80,195, and 23 specifically-expressed proteins in poly(I:C)/D-GalN, LPS/D-GalN, and CpG DNA/D-GalN groups, LPS/D-GalN-specific proteins are mostly distributed in the endoplasmic reticulum and more enriched in metabolic pathways, whereas poly (I:C)/D-GalN-specific proteins are mainly in the membrane and CpG DNA/D-GalN-specific proteins are related to the ribosome structural composition. 32131144 7 65 gly proteins 1012:1019 arg1 LPS/D-GalN proteins LPS/D-GalN Fterm proteins Among 80,195, and 23 specifically-expressed proteins in poly(I:C)/D-GalN, LPS/D-GalN, and CpG DNA/D-GalN groups, LPS/D-GalN-specific proteins are mostly distributed in the endoplasmic reticulum and more enriched in metabolic pathways, whereas poly (I:C)/D-GalN-specific proteins are mainly in the membrane and CpG DNA/D-GalN-specific proteins are related to the ribosome structural composition. 32123275 7 30 gly GH10 1449:1452 arg1 Xyl10E GH10 Xyl10E Cterm GH10 To further investigate the termite microbiomes as sources of biotechnologically relevant glycosyl hydrolases, a putative GH10 endo-β-1,4-xylanase, Xyl10E, was cloned and expressed in Escherichia coli. 31931062 6 75 gly fucosylated 909:919 arg1 fucosylated N-glycans fucosylated N-glycans A glycan-array analysis revealed that the two recombinant lectins had different binding intensities toward fucosylated N-glycans harboring fucose-α(1,2) galactose or fucose-α(1,4) N-acetylglucosamine. 31463900 1 45 gly modified 231:238 arg3 Metalloproteinases AND glycan moieties Metalloproteinases glycan moieties Fterm Metalloproteinases Metalloproteinases of the ADAMTS (a disintegrin and metalloproteinase with thrombospondin type 1 repeats) superfamily are extensively modified with glycan moieties. 33090600 3 6 gly MOG 505:507 arg1 the N-glycan MOG the N-glycan OGER MOG Q16653 This is mediated by the interaction of Lewis-type glycan structures in the N-glycan of MOG with the DC-SIGN receptor on dendritic cells (DCs). 32376684 2 72 gly presence 499:506 arg1 EOGT AND N-glycans EOGT N-glycans PUBTATOR EOGT 285203 Several EOGT mutations that may affect putative N-glycosylation consensus sites are recorded in the cancer database, but the presence and function of N-glycans in EOGT have not yet been characterized. 32376684 2 76 gly N-glycosylation 422:436 arg2 putative N-glycosylation consensus sites putative N-glycosylation consensus sites sites Several EOGT mutations that may affect putative N-glycosylation consensus sites are recorded in the cancer database, but the presence and function of N-glycans in EOGT have not yet been characterized. 33090600 1 9 gly glycoprotein 185:196 arg1 The protein myelin oligodendrocyte glycoprotein The protein myelin oligodendrocyte glycoprotein OGER myelin oligodendrocyte glycoprotein Q16653 The protein myelin oligodendrocyte glycoprotein (MOG) is a key component of myelin and an autoantigen in the disease multiple sclerosis (MS). 33090600 1 9 gly glycoprotein 185:196 arg1 MOG MOG OGER MOG Q16653 The protein myelin oligodendrocyte glycoprotein (MOG) is a key component of myelin and an autoantigen in the disease multiple sclerosis (MS). 33807002 9 47 gly N-acetyl-glycoprotein 1611:1631 arg1 N-acetyl-glycoprotein N-acetyl-glycoprotein PUBTATOR N-acetyl-glycoprotein 4669 RESULTS Three metabolites were identified as potential biomarkers: betaine, N-acetyl-glycoprotein, and carnitine. 31928547 0 59 gly composition 73:83 arg1 lipopolysaccharide-challenged pigs position lipopolysaccharide-challenged pigs position Holly polyphenols alleviate intestinal inflammation and alter microbiota composition in lipopolysaccharide-challenged pigs. 33127381 6 41 gly α1,2-fucosylated 859:874 arg1 CRS1 CRS1 sequence PUBTATOR CRS1 7291 sequence In particular, cryptdin-related sequence 1 (CRS1) expressed in Paneth cells was found to be α1,2-fucosylated. 33127381 5 7 gly glycopeptides 752:764 arg2 3212 O-linked and 2962 N-linked glycopeptides 3212 O-linked and 2962 N-linked glycopeptides glycopeptides Glycoproteomic analysis of ileal lysates identified 3212 O-linked and 2962 N-linked glycopeptides. 34712749 8 62 gly glycoproteins 1514:1526 arg1 glycoproteins glycoproteins Fterm glycoproteins The same dataset was also used to define glycoproteins altered by the down-regulation of endogenous EDEM2, which should contain its candidate-substrates. 32678209 3 33 gly glycoprotein 569:580 arg1 glycoprotein structures glycoprotein structures Fterm glycoprotein We analyze here the utilization of four disaccharides, lacto-N-biose (LNB), galacto-N-biose (GNB), fucosyl-α1,3-GlcNAc (3FN) and fucosyl-α1,6-GlcNAc (6FN), that form part of HMOs and glycoprotein structures, by the infant fecal microbiota. 32777429 2 49 gly used 379:382 arg2 The anionic polypeptide The anionic polypeptide polypeptide The anionic polypeptide, poly-γ-glutamic acid (PG) and the glycosaminoglycan, hyaluronic acid, were used to stabilize ACZ-NS prepared using the antisolvent precipitation (AS-PT) coupled with sonication technique. 32777429 2 49 gly used 379:382 arg2 poly-γ-glutamic acid poly-γ-glutamic acid glutamic acid The anionic polypeptide, poly-γ-glutamic acid (PG) and the glycosaminoglycan, hyaluronic acid, were used to stabilize ACZ-NS prepared using the antisolvent precipitation (AS-PT) coupled with sonication technique. 32353494 4 68 gly asialoglycoprotein 605:622 arg1 asialoglycoprotein receptor asialoglycoprotein receptor PUBTATOR asialoglycoprotein receptor 432 Galactose ligands could bind to the asialoglycoprotein receptor (ASGPR) on the surface of hepatocytes. 33821278 0 77 gly glycoprotein 78:89 arg1 glycoprotein glycoprotein PUBTATOR spike glycoprotein 43740568 Analysis of glycosylation and disulfide bonding of wild-type SARS-CoV-2 spike glycoprotein. 34279376 7 54 gly used 1263:1266 arg2 The algal biocomposite The algal biocomposite biocomposite The algal biocomposite obtained according to our procedure can be used also as a prebiotic supplement. 33125241 2 2 gly glycopeptide 191:202 arg2 Hydrophilic interaction liquid chromatography (HILIC) glycopeptide enrichment Hydrophilic interaction liquid chromatography (HILIC) glycopeptide enrichment glycopeptide Hydrophilic interaction liquid chromatography (HILIC) glycopeptide enrichment is an indispensable tool for the high-throughput characterization of glycoproteomes. 33363672 11 72 gly glycopeptide 1880:1891 arg2 MS/MS- and MS1-based glycopeptide identification MS/MS- and MS1-based glycopeptide identification glycopeptide Finally, this study presents a semiautomated workflow for reliable glycoproteomic data analysis by the combination of software packages for MS/MS- and MS1-based glycopeptide identification as well as the integration of analyte quality control and quantification. 33038510 11 67 gly glycoproteins 2052:2064 arg1 those glycoproteins those glycoproteins Fterm glycoproteins In the present work, we aimed to shed light on novel biomarkers based on altered glycosylation in PDA, in particular those glycoproteins of PDA tissues carrying the tumor carbohydrate antigen sialyl-Lewis x (sLex). 33038510 12 117 gly glycoprotein 2202:2213 arg1 the glycoprotein MFAP4 the glycoprotein MFAP4 Fterm glycoprotein Through a glycoproteomic approach, we have shown that the glycoprotein MFAP4 carries sLex in PDA tissues and not in control pancreatic tissues. 32862508 5 62 gly glycoproteins 990:1002 arg1 gill glycoproteins gill glycoproteins Fterm glycoproteins The broad, fucose-binding Aleuria Aurantia lectin (AAL) highly reduced MrNV-VLPs binding to gill tissue sections and lysates, and efficiently disrupted the specific interactions between the VLPs and gill glycoproteins. 34013301 0 4 gly epitopes 71:78 arg1 the SARS-CoV-2 Spike protein Spike protein epitopes PUBTATOR Spike protein 43740568 Plasmodium infection induces cross-reactive antibodies to carbohydrate epitopes on the SARS-CoV-2 Spike protein. 32996878 11 26 gly C16  1917:1920 arg1 C19  C19  nov Q9UIW2 C19  Peptidoglycan type of strain TMW 2.1615T is Lys-Ala and major fatty acids are C16 : 0, C19 : 0cyclo ω8c and summed feature 8. 33068039 1 33 gly glycoprotein 195:206 arg1 its envelope glycoprotein its envelope glycoprotein PUBTATOR envelope glycoprotein 100616444 Machupo virus, known to cause hemorrhagic fevers, enters human cells via binding with its envelope glycoprotein to transferrin receptor 1 (TfR). 31924694 11 36 gly N-glycosylation 2040:2054 arg2 N-glycosylation sites N-glycosylation sites sites Furthermore, original data on N-glycosylation sites of N. lugens adults are presented, providing novel insights into planthopper's biology and information for future biological pest control strategies. 32376684 1 87 gly receptors 298:306 arg1 EGF repeats Notch receptors EGF repeats PUBTATOR Notch receptors 4851 Epidermal growth factor (EGF) domain-specific O-GlcNAc transferase (EOGT) is an endoplasmic reticulum (ER)-resident protein that modifies EGF repeats of Notch receptors and thereby regulates Delta-like ligand-mediated Notch signaling. 33517204 9 80 gly used 1111:1114 arg2 This nanocomposite This nanocomposite nanocomposite This nanocomposite was used to increase the antibody loading and accelerate the electron transfer, which can increase the biosensor sensitivity. 33301522 8 27 gly N-glycosylated 1853:1866 arg1 N-glycosylated proteins N-glycosylated proteins Fterm proteins This study also provides an interesting comparison of the N-glycoproteome of breast cancer cells cultured in different growth conditions, indicating the important role of N-glycosylated proteins in cancer cell growth and the choice of the cell culture model for studies in tumor biology and drug evaluation. 33295623 6 35 gly α-O-GalNAc-threonine 1066:1085 arg1 the α-O-GalNAc-threonine residue threonine residue the α-O-GalNAc-threonine residue threonine residue Further examination of the NMR-based structure and the MD results suggest a more extensive network of hydrogen bond interactions within the α-O-GalNAc-threonine residue than has been previously appreciated, which influences the properties of the protein backbone. 35141446 9 2 gly glycosylation 1586:1598 arg2 specific glycosylation sites specific glycosylation sites sites These results provide important information on rec-eCG in the regulation of specific glycosylation sites and improve our understanding of the specific biological activity of rec-eCG glycosylation sites in equidaes. 35141446 9 79 gly glycosylation 1683:1695 arg2 rec-eCG glycosylation sites rec-eCG glycosylation sites sites These results provide important information on rec-eCG in the regulation of specific glycosylation sites and improve our understanding of the specific biological activity of rec-eCG glycosylation sites in equidaes. 34366479 5 20 gly found 791:795 arg1 HSRP-2 AND Varied monosaccharide compositions HSRP-2 Varied monosaccharide compositions OGER HSRP Q96RP3 Varied monosaccharide compositions were found in FSRP-1, FSRP-2, HSRP-1 and HSRP-2, and HAD-treated SRP had more glucose and less galactose. 34366479 5 20 gly found 791:795 arg1 HSRP-1 AND Varied monosaccharide compositions HSRP-1 Varied monosaccharide compositions PUBTATOR HSRP-1 3839 Varied monosaccharide compositions were found in FSRP-1, FSRP-2, HSRP-1 and HSRP-2, and HAD-treated SRP had more glucose and less galactose. 34366479 5 20 gly found 791:795 arg1 FSRP-1 AND Varied monosaccharide compositions FSRP Varied monosaccharide compositions PUBTATOR FSRP 10272 Varied monosaccharide compositions were found in FSRP-1, FSRP-2, HSRP-1 and HSRP-2, and HAD-treated SRP had more glucose and less galactose. 34482828 2 36 gly glycosylation 586:598 arg2 the following glycosylation site mutants the following glycosylation site mutants site To examine the biological function of glycosylated sites in eCG, the following glycosylation site mutants were constructed: eCGβ/αΔ56, substitution of Asn56 of α-subunit with Gln; eCGβ-D/α, deletion of the O-linked glycosylation site at the carboxyl-terminal peptide (CTP) region of the β-subunit; eCGβ-D/αΔ56, double mutant. 34482828 2 111 gly glycosylated 545:556 arg1 glycosylated sites glycosylated sites sites To examine the biological function of glycosylated sites in eCG, the following glycosylation site mutants were constructed: eCGβ/αΔ56, substitution of Asn56 of α-subunit with Gln; eCGβ-D/α, deletion of the O-linked glycosylation site at the carboxyl-terminal peptide (CTP) region of the β-subunit; eCGβ-D/αΔ56, double mutant. 34482828 2 132 gly glycosylation 722:734 arg2 the O-linked glycosylation site the O-linked glycosylation site site To examine the biological function of glycosylated sites in eCG, the following glycosylation site mutants were constructed: eCGβ/αΔ56, substitution of Asn56 of α-subunit with Gln; eCGβ-D/α, deletion of the O-linked glycosylation site at the carboxyl-terminal peptide (CTP) region of the β-subunit; eCGβ-D/αΔ56, double mutant. 34482828 2 132 gly glycosylation 722:734 arg2 the carboxyl-terminal peptide (CTP) region the carboxyl-terminal peptide (CTP) region region To examine the biological function of glycosylated sites in eCG, the following glycosylation site mutants were constructed: eCGβ/αΔ56, substitution of Asn56 of α-subunit with Gln; eCGβ-D/α, deletion of the O-linked glycosylation site at the carboxyl-terminal peptide (CTP) region of the β-subunit; eCGβ-D/αΔ56, double mutant. 32152415 4 11 gly hypo-sialylated 825:839 arg1 the pro-inflammatory hypo-sialylated T-antigen glycans the pro-inflammatory hypo-sialylated T-antigen glycans In particular, high levels of the pro-inflammatory hypo-sialylated T-antigen glycans and low levels of the anti-inflammatory fucosylated glycans were associated with higher abundance of glycan-degrading microbial species (in particular, Bacteroides vulgatus), a less diverse microbiome, higher levels of inflammation, and higher levels of ileum-associated HIV DNA. 32152415 4 15 gly pro-inflammatory 808:823 arg1 the pro-inflammatory hypo-sialylated T-antigen glycans pro the pro-inflammatory hypo-sialylated T-antigen glycans pro In particular, high levels of the pro-inflammatory hypo-sialylated T-antigen glycans and low levels of the anti-inflammatory fucosylated glycans were associated with higher abundance of glycan-degrading microbial species (in particular, Bacteroides vulgatus), a less diverse microbiome, higher levels of inflammation, and higher levels of ileum-associated HIV DNA. 32152415 4 49 gly fucosylated 899:909 arg1 the anti-inflammatory fucosylated glycans the anti-inflammatory fucosylated glycans In particular, high levels of the pro-inflammatory hypo-sialylated T-antigen glycans and low levels of the anti-inflammatory fucosylated glycans were associated with higher abundance of glycan-degrading microbial species (in particular, Bacteroides vulgatus), a less diverse microbiome, higher levels of inflammation, and higher levels of ileum-associated HIV DNA. 34196604 4 43 gly observed 435:442 arg1 anteiso-C17  anteiso-C17  nov Q9UIW2 C17  The typical chemotaxonomic properties of members of the genus Streptomyces were observed for strain CH5-8T, e.g. ll-diaminopimelic acid in cell peptidoglycan, MK-9(H8), MK-9(H6), and MK-9(H4) as major menaquinones and anteiso-C15 : 0, iso-C16 : 0, and anteiso-C17 : 0 as major fatty acids. 32977599 3 81 gly glycoprotein 397:408 arg1 the glycoprotein the glycoprotein Fterm glycoprotein Here, two structurally different anti-Ebola 13F6 antibodies, recognizing the heavily glycosylated mucin-like domain (MLD) of the glycoprotein (GP), were expressed in transgenic Nicotiana tabacum plants and designed as inexpensive and effective diagnostic antibodies against Ebola virus disease (EVD). 32977599 3 31 gly glycosylated 353:364 arg1 the glycoprotein glycoprotein domain Fterm glycoprotein domain Here, two structurally different anti-Ebola 13F6 antibodies, recognizing the heavily glycosylated mucin-like domain (MLD) of the glycoprotein (GP), were expressed in transgenic Nicotiana tabacum plants and designed as inexpensive and effective diagnostic antibodies against Ebola virus disease (EVD). 32977599 3 31 gly glycosylated 353:364 arg1 MLD MLD domain OGER MLD O15121 domain Here, two structurally different anti-Ebola 13F6 antibodies, recognizing the heavily glycosylated mucin-like domain (MLD) of the glycoprotein (GP), were expressed in transgenic Nicotiana tabacum plants and designed as inexpensive and effective diagnostic antibodies against Ebola virus disease (EVD). 31931062 0 63 gly fucosylated 122:132 arg1 highly fucosylated N-glycans highly fucosylated N-glycans Ricin B-like lectin orthologues from two mushrooms, Hericium erinaceus and Stereum hirsutum, enable recognition of highly fucosylated N-glycans. 34482828 0 71 gly glycosylation 31:43 arg2 N-linked and O-linked glycosylation sites N-linked and O-linked glycosylation sites sites Roles of N-linked and O-linked glycosylation sites in the activity of equine chorionic gonadotropin in cells expressing rat luteinizing hormone/chorionic gonadotropin receptor and follicle-stimulating hormone receptor. 34552927 1 11 gly attached 266:273 arg1 core proteins AND Glycosaminoglycans core proteins Glycosaminoglycans Fterm proteins Glycosaminoglycans (GAGs) including chondroitin sulfate, dermatan sulfate, heparan sulfate, and keratan sulfate, except for hyaluronan that is a free polysaccharide, are covalently attached to core proteins to form proteoglycans. 31924694 4 97 gly glycopeptide 961:972 arg2 the glycopeptide level the glycopeptide level glycopeptide A comprehensive investigation of the N-glycosylation sites from the adult stages of N. lugens was conducted, allowing a qualitative and quantitative comparison between sexes at the glycopeptide level. 31924694 4 106 gly N-glycosylation 817:831 arg2 the N-glycosylation sites the N-glycosylation sites sites A comprehensive investigation of the N-glycosylation sites from the adult stages of N. lugens was conducted, allowing a qualitative and quantitative comparison between sexes at the glycopeptide level. 33127381 8 0 gly CRS1 1098:1101 arg1 the O-glycans CRS1 the O-glycans PUBTATOR CRS1 7291 Identification of α1,2-fucose on the O-glycans of CRS1 expressed in Paneth cells will pave the way for a mechanistic understanding of α1,2-fucose-dependent symbiosis with intestinal bacteria and elimination of pathogenic bacteria in the intestine. 33652358 5 79 gly used 870:873 arg2 phytochemical compositions phytochemical compositions positions METHODS Combined with biosynthetic pathway analysis, phytochemical compositions identified by UHPLC-Q-Orbitrap HRMS were used to build substantial phytochemical groups and further discover specific Q-markers. 32841408 3 43 gly heterogeneity 362:374 arg1 glycan glycan Because of the heterogeneity of glycan, the structure of rhuEPO was complex with several isoforms. 35116628 9 36 gly NRG1 1281:1284 arg1 the fucosylated structures NRG1 the fucosylated structures PUBTATOR NRG1 3084 Both AAL ELISA and protein ELISA assays showed that the fucosylated structures of NRG1 had a remarkable increase in BRAF V600E mutant PTC patients compared with BRAF wild type PTC controls. 35116628 9 39 gly fucosylated 1255:1265 arg1 the fucosylated structures the fucosylated structures Both AAL ELISA and protein ELISA assays showed that the fucosylated structures of NRG1 had a remarkable increase in BRAF V600E mutant PTC patients compared with BRAF wild type PTC controls. 32376684 6 70 gly modified 974:981 arg1 both residues AND oligomannose N-glycans both residues oligomannose N-glycans residues Lectin blotting, endoglycosidase H digestion, and MS analysis revealed that both residues are modified with oligomannose N-glycans. 33815695 5 38 gly protein 951:957 arg1 peptidoglycan protein peptidoglycan Fterm protein Furthermore, we detected variability in the amount and composition of protein, nucleic acid and peptidoglycan cargo carried by MVs from each S. aureus strain. 33362841 1 78 gly glycoproteins 246:258 arg1 extracellular glycoproteins extracellular glycoproteins Fterm glycoproteins The predominant Fascilin 1 (FAS1)-containing proteins in plants belong to the Fasciclin-Like Arabinogalactan-protein (FLA) family of extracellular glycoproteins. 32223833 6 18 gly acid 886:889 arg1 the cell-wall peptidoglycan glutamic acid, glycine the cell-wall peptidoglycan glutamic acid, glycine The novel strain contained meso-diaminopimelic acid and 3-OH-diaminopimelic acid, d-glutamic acid, glycine and d-alanine in the cell-wall peptidoglycan. 32223833 6 29 gly glycine 892:898 arg1 the cell-wall peptidoglycan glutamic acid, glycine the cell-wall peptidoglycan glutamic acid, glycine The novel strain contained meso-diaminopimelic acid and 3-OH-diaminopimelic acid, d-glutamic acid, glycine and d-alanine in the cell-wall peptidoglycan. 32223833 6 75 gly d-alanine 904:912 arg1 the cell-wall peptidoglycan alanine the cell-wall peptidoglycan alanine The novel strain contained meso-diaminopimelic acid and 3-OH-diaminopimelic acid, d-glutamic acid, glycine and d-alanine in the cell-wall peptidoglycan. 33807914 3 43 gly glycoprotein 511:522 arg1 the intestinal glycoprotein Mucin2 the intestinal glycoprotein Mucin2 Fterm glycoprotein Previous work has shown that fucose, the terminal glycan chain component of the intestinal glycoprotein Mucin2, and fucoidan polysaccharides have an anti-inflammatory effect in some mouse models of colitis. 33807914 3 50 gly Mucin2 524:529 arg1 the terminal glycan chain component Mucin2 the terminal glycan chain component PUBTATOR Mucin2 Q02817 Previous work has shown that fucose, the terminal glycan chain component of the intestinal glycoprotein Mucin2, and fucoidan polysaccharides have an anti-inflammatory effect in some mouse models of colitis. 33807914 3 50 gly Mucin2 524:529 arg1 fucose Mucin2 fucose PUBTATOR Mucin2 Q02817 Previous work has shown that fucose, the terminal glycan chain component of the intestinal glycoprotein Mucin2, and fucoidan polysaccharides have an anti-inflammatory effect in some mouse models of colitis. 34163440 7 41 gly glycoproteins 1141:1153 arg1 The differential glycoproteins The differential glycoproteins Fterm glycoproteins The differential glycoproteins were mainly involved in various types of N-glycan biosynthesis, mRNA surveillance pathway, and protein processing in the endoplasmic reticulum. 34020817 2 84 gly glycoprotein 245:256 arg1 The HIV-1 envelope (Env) glycoprotein The HIV-1 envelope (Env) glycoprotein Fterm glycoprotein The HIV-1 envelope (Env) glycoprotein trimer is covered by N-linked glycan comprising half its mass and requires both trimer assembly and subunit cleavage to fold into a prefusion-closed conformation. 32600019 14 70 gly C 1798:1798 arg1 carbohydrate vitamin C carbohydrate Cterm vitamin C CONCLUSIONS The juice samples contain appreciable amounts of carbohydrate, vitamin C, flavonoids, alkaloids, and glycosides. 33363672 3 88 gly glycopeptides 540:552 arg2 glycopeptides glycopeptides glycopeptides In recent years, several bioinformatic tools were developed to facilitate and improve both the identification and quantification of glycopeptides. 33363672 0 49 gly glycopeptide 67:78 arg2 maximized glycopeptide identification maximized glycopeptide identification glycopeptide Semiautomated glycoproteomics data analysis workflow for maximized glycopeptide identification and reliable quantification. 33821278 6 40 gly glycoprotein 1033:1044 arg1 the wild-type S glycoprotein N-linked glycans the wild-type S glycoprotein N-linked glycans Compared with soluble or solubilized S glycoproteins modified to prevent proteolytic cleavage and to retain a prefusion conformation, more of the wild-type S glycoprotein N-linked glycans are processed to complex forms. 33821278 6 70 gly glycoproteins 914:926 arg1 soluble or solubilized S glycoproteins soluble or solubilized S glycoproteins PUBTATOR S glycoproteins 43740568 Compared with soluble or solubilized S glycoproteins modified to prevent proteolytic cleavage and to retain a prefusion conformation, more of the wild-type S glycoprotein N-linked glycans are processed to complex forms. 33821278 11 29 gly glycoprotein 1818:1829 arg1 the native SARS-CoV-2 S glycoprotein the native SARS-CoV-2 S glycoprotein PUBTATOR S glycoprotein 43740568 These findings enhance our understanding of the Golgi processing of the native SARS-CoV-2 S glycoprotein carbohydrates and could assist the design of interventions. 33127381 4 44 gly glycoproteins 587:599 arg1 glycoproteins glycoproteins Fterm glycoproteins However, glycoproteins in Paneth cells carrying α1,2-fucose have not yet been identified. 32385312 5 47 gly suberin 1051:1057 arg1 polysaccharides suberin polysaccharides Fterm suberin The results show that, in general, drought does not affect the proportion of the main components of cork, the monomers of suberin or of polysaccharides, with few exceptions e.g. drought increased ethanol extractives and xylose in polysaccharides and decreased arabinose in polysaccharides. 33090600 6 41 gly neoglycopeptide 1229:1243 arg2 the neoglycopeptide the neoglycopeptide neoglycopeptide Finally, a cytokine secretion assay was carried out on human monocyte-derived DCs, which showed the ability of the neoglycopeptide decorated with a single LeX to alter the balance of pro- and anti-inflammatory cytokines, inducing a tolerogenic response. 31924694 7 29 gly N-glycosylation 1409:1423 arg2 Male- and female-specific N-glycosylation sites Male- and female-specific N-glycosylation sites sites Male- and female-specific N-glycosylation sites were identified, and some of these sex-specific N-glycosylation sites were shown to be derived from proteins with a putative role in insect reproduction. 31924694 7 79 gly N-glycosylation 1479:1493 arg2 these sex-specific N-glycosylation sites these sex-specific N-glycosylation sites sites Male- and female-specific N-glycosylation sites were identified, and some of these sex-specific N-glycosylation sites were shown to be derived from proteins with a putative role in insect reproduction. 31931062 5 45 gly glycoprotein 776:787 arg1 N-linked glycoprotein transferrin N-linked glycoprotein transferrin Fterm glycoprotein The hemagglutination activity of rSHL1 was inhibited by N-linked glycoprotein transferrin. 33363672 8 45 gly glycopeptide 1304:1315 arg2 glycopeptide quantification glycopeptide quantification glycopeptide For glycopeptide quantification, the performance of LaCyTools was compared to Skyline, and GlycopeptideGraphMS. 32823755 9 2 gly beet 1794:1797 arg1 FOS FOS beet OGER FOS P01100 This study points out the combination of FOS from sugar beet and garlic residues as a potential prebiotic to be used in young ruminants' nutrition in order to improve production yields. 33821278 4 53 gly glycoproteins 622:634 arg1 spike glycoproteins spike glycoproteins PUBTATOR spike glycoproteins 43740568 We found that virus-like particles produced by coexpression of SARS-CoV-2 S, M, E and N proteins contained spike glycoproteins that were extensively modified by complex carbohydrates. 33821278 4 89 gly modified 658:665 arg1 spike glycoproteins AND complex carbohydrates spike glycoproteins complex carbohydrates PUBTATOR spike glycoproteins 43740568 We found that virus-like particles produced by coexpression of SARS-CoV-2 S, M, E and N proteins contained spike glycoproteins that were extensively modified by complex carbohydrates. 33115649 3 39 gly HOS 419:421 arg1 The sugar composition HOS The sugar composition OGER HOS Q5SRY7 The sugar composition of the purified HOS with an weight-average molecular weight of 178.4 ± 2.1 kDa and a polydispersity index of 1.02 ± 0.02 contained galacturonic acid (34%), galactose (31%), rhamnose (21%), arabinose (4.2%), glucuronic acid (2.5%), xylose (1.2%), and other monosaccharides (6.1%) by weight. 34211273 10 3 gly used 1707:1710 arg2 This potential composite This potential composite composite This potential composite could be used as scaffolds in bone tissue engineering application after in vivo studies. 33301522 6 87 gly N-glycopeptides 1395:1409 arg2 intact N-glycopeptides intact N-glycopeptides N-glycopeptides Furthermore, the optimized workflow was applied to the analysis of intact N-glycopeptides in two-dimensional (2D) and three-dimensional (3D)-cultured breast cancer cells in vitro and xenografted tumors in mice. 34576834 6 55 gly fucosylated 1249:1259 arg1 fucosylated glycans fucosylated glycans (3) Results: Among the main features discriminant for infants who did not experience any reported bronchitis (n = 80/106) or LRTI (n = 70/103) were the 2-HMO formula containing 2'FL and LNnT, higher acetate, fucosylated glycans and Bifidobacterium, as well as lower succinate, butyrate, propionate and 5-aminovalerate, along with Carnobacteriaceae members and Escherichia. 34482828 12 54 gly glycosylation 1870:1882 arg2 Asn56 Asn56 chorionic gonadotropin Asn56 This indicated that the glycosylation site at Asn56 of the α-subunit plays a pivotal role in the LH-like activity of eCG. 34482828 12 54 gly glycosylation 1870:1882 arg2 the glycosylation site the glycosylation site site This indicated that the glycosylation site at Asn56 of the α-subunit plays a pivotal role in the LH-like activity of eCG. 32862508 7 50 gly fucosylated 1354:1364 arg1 fucosylated N-glycans fucosylated N-glycans Therefore, the results from this study highly suggested that MrNV-VLPs preferentially attach to fucosylated N-glycans in the susceptible gill tissues, and these findings could lead to the development of strategies that target virus-host surface glycan interactions to reduce MrNV infections. 32359163 7 3 gly glycosylation 1456:1468 arg2 the N-linked and O-linked glycosylation motifs the N-linked and O-linked glycosylation motifs motifs Sequence features of the globular and disordered regions clearly correlate with one another, implying coevolution of these distinct regions, as well as with the N-linked and O-linked glycosylation motifs. 32386244 2 49 gly used 538:541 arg2 The prepared nanocomposite The prepared nanocomposite nanocomposite The prepared nanocomposite was used to isolate and preconcentrate celecoxib from human breast milk, urine and plasma samples. 32131144 3 10 gly ALF 532:534 arg1 poly(I:C)/D-GalN ALF poly(I:C)/D-GalN OGER ALF Q8R4I4 However, the molecular differences among three ALF models (LPS/D-GalN, poly(I:C)/D-GalN, and CpG DNA/D-GalN), are unclear. 32131144 3 10 gly ALF 532:534 arg1 LPS/D-GalN ALF LPS/D-GalN OGER ALF Q8R4I4 However, the molecular differences among three ALF models (LPS/D-GalN, poly(I:C)/D-GalN, and CpG DNA/D-GalN), are unclear. 32131144 3 10 gly ALF 532:534 arg1 CpG DNA/D-GalN ALF CpG DNA/D-GalN OGER ALF Q8R4I4 However, the molecular differences among three ALF models (LPS/D-GalN, poly(I:C)/D-GalN, and CpG DNA/D-GalN), are unclear. 32376684 8 55 gly N-glycosylation 1225:1239 arg2 both N-glycosylation sites both N-glycosylation sites sites However, simultaneous substitution of both N-glycosylation sites affected both EOGT maturation and expression levels without an apparent change in enzymatic activity, suggesting that N-glycosylation at a single site is sufficient for EOGT maturation and expression. 32376684 8 33 gly N-glycosylation 1365:1379 arg1 a single site site site However, simultaneous substitution of both N-glycosylation sites affected both EOGT maturation and expression levels without an apparent change in enzymatic activity, suggesting that N-glycosylation at a single site is sufficient for EOGT maturation and expression. 35126378 0 25 gly D-Ala-Ended 10:20 arg1 D-Ala-Ended Peptidoglycan Precursors Ala D-Ala-Ended Peptidoglycan Precursors Ala Effect of D-Ala-Ended Peptidoglycan Precursors on the Immune Regulation of Lactobacillus plantarum Strains. 32220841 8 67 gly FOS 1167:1169 arg1 the growth and oligosaccharide utilization FOS the growth and oligosaccharide utilization OGER FOS P01100 We compared the growth and oligosaccharide utilization of GOS and FOS by bifidobacterial species in pure culture and coculture. 33127381 2 11 gly α1,2-fucosylated 298:313 arg1 α1,2-fucosylated mucin α1,2-fucosylated mucin PUBTATOR α1,2-fucosylated mucin 100508689 It is postulated that α1,2-fucosylated mucin secreted from goblet cells is involved in defending an organism against infections, but the detailed molecular mechanisms are yet to be elucidated. 33125241 6 36 gly glycopeptide 1233:1244 arg2 glycopeptide glycopeptide glycopeptide Using high-field asymmetric waveform ion mobility spectrometry (FAIMS) fractionation, we show that at high compensation voltages (CVs), short aliphatic glycopeptides can be enriched from complex samples, providing an alternative means to identify glycopeptide recalcitrant to hydrophilic-based enrichment. 33125241 6 58 gly glycopeptides 1138:1150 arg2 short aliphatic glycopeptides short aliphatic glycopeptides glycopeptides Using high-field asymmetric waveform ion mobility spectrometry (FAIMS) fractionation, we show that at high compensation voltages (CVs), short aliphatic glycopeptides can be enriched from complex samples, providing an alternative means to identify glycopeptide recalcitrant to hydrophilic-based enrichment. 33127381 7 35 gly modified 970:977 arg3 unique Thr residues AND O-glycans unique Thr residues O-glycans Thr residues Unlike other antimicrobial α-defensin proteins, CRS1 contains unique Thr residues, which are modified with O-glycans, with 3HexNAc2Hex1Fuc1NeuAc being the main glycoform. 32376684 0 24 gly N-Glycans 0:8 arg1 EOGT EOGT N-Glycans PUBTATOR EOGT 285203 N-Glycans on EGF domain-specific O-GlcNAc transferase (EOGT) facilitate EOGT maturation and peripheral endoplasmic reticulum localization. 33821278 1 10 gly glycoprotein 172:183 arg1 its spike (S) glycoprotein its spike (S) glycoprotein Fterm glycoprotein The SARS-CoV-2 coronavirus, the etiologic agent of COVID-19, uses its spike (S) glycoprotein anchored in the viral membrane to enter host cells. 32672838 4 73 gly glycoprotein 1215:1226 arg1 the glycoprotein the glycoprotein Fterm glycoprotein The presence of other sugars was not detected by 1 H NMR and HPAEC-PAD, suggesting that HPAs hydrolyze only the terminal glycosidic bond in the glycoprotein, resulting in the selective release of sialic acid from AGP. 33125241 10 30 gly glycopeptides 1757:1769 arg2 access glycopeptides access glycopeptides glycopeptides Taken together, these results demonstrate that FAIMS provides an alternative means to access glycopeptides and is a valuable tool for glycoproteomic analysis. 33044149 8 23 gly glycine 1013:1019 arg1 the peptidoglycans glutamic acid and glycine the peptidoglycans glutamic acid and glycine The strain Q22T contained 2,4-diaminobutyric acid, alanine acid, glutamic acid and glycine in the peptidoglycans. 33044149 8 67 gly acid 1004:1007 arg1 the peptidoglycans glutamic acid and glycine the peptidoglycans glutamic acid and glycine The strain Q22T contained 2,4-diaminobutyric acid, alanine acid, glutamic acid and glycine in the peptidoglycans. 32706435 4 28 gly glycoproteins 580:592 arg1 H. hispanica S-layer glycoproteins H. hispanica S-layer glycoproteins Fterm glycoproteins Our previous work showed that H. hispanica S-layer glycoproteins are modified by an N-linked glucose-α-(1, 2)-[sulfoquinovosamine-β-(1, 6)-]galactose trisaccharide and an O-linked glucose-α-(1, 4)-galactose disaccharide. 33362841 8 2 gly glycosylation 1419:1431 arg1 cell wall glycoproteins cell wall glycoproteins Fterm glycoproteins A FLA16-YFP fusion protein driven by the endogenous putative FLA16 promoter in wild type background showed expression in cells with secondary cell walls, and FLA16 displayed characteristics of cell wall glycoproteins with moderate glycosylation. 33362841 8 4 gly glycoproteins 1391:1403 arg1 cell wall glycoproteins cell wall glycoproteins Fterm glycoproteins A FLA16-YFP fusion protein driven by the endogenous putative FLA16 promoter in wild type background showed expression in cells with secondary cell walls, and FLA16 displayed characteristics of cell wall glycoproteins with moderate glycosylation. 33038510 7 110 gly glycoform 1313:1321 arg1 MFAP4 glycoform MFAP4 glycoform PUBTATOR MFAP4 4239 The specificity of MFAP4 glycoform containing sLex in PDA tissues shows its relevance as a potential PDA biomarker. 32908918 5 75 gly peptide 699:705 arg1 The glucagon-like peptide 2 (GLP-2) and lipopolysaccharide (LPS) levels The glucagon-like peptide 2 (GLP-2) and lipopolysaccharide (LPS) levels The glucagon-like peptide 2 (GLP-2) and lipopolysaccharide (LPS) levels in plasma and intestinal tissues were measured by ELISA and Limulus test, respectively. 32310329 4 13 gly FV 557:558 arg1 The glycan profile FV The glycan profile Cterm FV 2153 The glycan profile of FV, as well as how it affects the activity, stability, and immunogenicity, remains unknown. 33038510 13 95 gly glycoform 2403:2411 arg1 its sLex glycoform its sLex glycoform MFAP4 is found in the extracellular matrix in PDA and although its role in cancer progression is unclear, its sLex glycoform could be a potential biomarker in pancreatic ductal adenocarcinoma. 35126378 8 47 gly D-Ala-ended 1383:1393 arg1 D-Ala-ended peptidoglycan precursors Ala D-Ala-ended peptidoglycan precursors Ala These results indicate that D-Ala-ended peptidoglycan precursors play a central role in the variable immunomodulatory ability of L. plantarum. 32053092 8 82 gly acids 1449:1453 arg1 d-alanine d-alanine alanine The peptidoglycan type was supposed to be the B2ß with amino acids d-alanine, d-glutamic acid, glycine, l-homoserine and d-ornithine. 32053092 8 82 gly acids 1449:1453 arg1 glycine glutamic acid, glycine glutamic acid, glycine The peptidoglycan type was supposed to be the B2ß with amino acids d-alanine, d-glutamic acid, glycine, l-homoserine and d-ornithine. 32518945 2 39 gly glycoproteins 343:355 arg1 heparin heparin Fterm heparin A subset of these are adept at scavenging host glycans within this environment, including mucin O-linked glycans, N-linked glycoproteins and highly sulfated glycosaminoglycans (GAGs) such as heparin (Hep) and chondroitin sulfate (CS). 32518945 2 39 gly glycoproteins 343:355 arg1 N-linked glycoproteins N-linked glycoproteins Fterm glycoproteins A subset of these are adept at scavenging host glycans within this environment, including mucin O-linked glycans, N-linked glycoproteins and highly sulfated glycosaminoglycans (GAGs) such as heparin (Hep) and chondroitin sulfate (CS). 34482828 1 10 gly glycoprotein 354:365 arg1 the glycoprotein hormone family the glycoprotein hormone family Fterm glycoprotein BACKGROUND Equine chorionic gonadotropin (eCG), which comprises highly glycosylated α-subunit and β-subunit, is a unique member of the glycoprotein hormone family as it elicits both follicle-stimulating hormone (FSH)-like and luteinizing hormone (LH)-like responses in non-equid species. 34482828 1 127 gly glycosylated 290:301 arg1 highly glycosylated α-subunit highly glycosylated α-subunit Fterm α-subunit BACKGROUND Equine chorionic gonadotropin (eCG), which comprises highly glycosylated α-subunit and β-subunit, is a unique member of the glycoprotein hormone family as it elicits both follicle-stimulating hormone (FSH)-like and luteinizing hormone (LH)-like responses in non-equid species. 32459612 7 26 gly attached 1505:1512 arg1 N-linked membrane glycoproteins AND terminal sialic acids N-linked membrane glycoproteins terminal sialic acids Fterm glycoproteins We can conclude that terminal sialic acids attached to N-linked membrane glycoproteins on B cells are used for virus attachment and are essential for successful virus infection. 32459612 7 37 gly glycoproteins 1535:1547 arg1 N-linked membrane glycoproteins N-linked membrane glycoproteins Fterm glycoproteins We can conclude that terminal sialic acids attached to N-linked membrane glycoproteins on B cells are used for virus attachment and are essential for successful virus infection. 33127381 0 56 gly O-glycosylated 66:79 arg1 O-glycosylated protein O-glycosylated protein Fterm protein Glycoproteomic analysis identifies cryptdin-related sequence 1 as O-glycosylated protein modified with α1,2-fucose in the small intestine. 31730034 5 13 gly K3-2T 515:519 arg1 The cell-wall peptidoglycan K3-2T The cell-wall peptidoglycan Cterm K3-2T The cell-wall peptidoglycan of strain K3-2T contained lysine (the diagnostic diamino acid), glutamic acid, alanine, ornithine, glycine and serine. 34123172 6 37 gly glycosylation 1086:1098 arg2 their glycosylation sites their glycosylation sites sites Our results suggest that glycoforms displaying highly correlated motion in their glycosylation sites tend to bind cellulose with high affinity and lignin with low affinity. 32376684 10 11 gly N-glycosylation 1710:1724 arg1 EOGT EOGT PUBTATOR EOGT 285203 Moreover, the N263Q/N354Q variant exhibited altered subcellular distribution within the ER in HEK293T cells, indicating that N-glycosylation of EOGT is required for its ER localization at the cell periphery. 32127446 8 87 gly glycoproteins 1725:1737 arg1 mucin glycoproteins mucin glycoproteins Fterm glycoproteins Pathogens such as P. aeruginosa that lack sialidases may rely on enzymes from other bacteria to utilize mucin-derived monosaccharides.IMPORTANCE One of the first lines of defense present at mucosal epithelial tissues is mucus, which is a highly viscous material formed by mucin glycoproteins. 33125241 8 46 gly glycopeptides 1499:1511 arg2 glycopeptides glycopeptides glycopeptides Excitingly, the ability to enrich glycopeptides using FAIMS appears generally applicable, with the N-linked glycopeptides of Campylobacter fetus subsp. 33125241 8 49 gly glycopeptides 1573:1585 arg2 the N-linked glycopeptides the N-linked glycopeptides glycopeptides Excitingly, the ability to enrich glycopeptides using FAIMS appears generally applicable, with the N-linked glycopeptides of Campylobacter fetus subsp. 32298636 1 31 gly sialylated 230:239 arg1 sialylated glycans sialylated glycans Host lipid composition influences many stages of the influenza A virus (IAV) entry process, including initial binding of IAV to sialylated glycans, fusion between the viral envelope and the host membrane, and the formation of a fusion pore through which the viral genome is transferred into a target cell. 35116628 1 0 gly glycoprotein 149:160 arg1 a membrane glycoprotein a membrane glycoprotein Fterm glycoprotein BACKGROUND Neuregulin 1 (NRG1) is a membrane glycoprotein mediating cell-to-cell signaling and has a crucial role in the growth and development of various organ systems. 35116628 1 0 gly glycoprotein 149:160 arg1 BACKGROUND Neuregulin 1 BACKGROUND Neuregulin 1 PUBTATOR Neuregulin 1 3084 BACKGROUND Neuregulin 1 (NRG1) is a membrane glycoprotein mediating cell-to-cell signaling and has a crucial role in the growth and development of various organ systems. 33295623 2 59 gly glycoprotein 432:443 arg1 the glycoprotein the glycoprotein Fterm glycoprotein Both such modifications can coexist in this domain of the glycoprotein. 35141446 1 86 gly glycoprotein 284:295 arg1 a specific glycoprotein a specific glycoprotein Fterm glycoprotein Equine chorionic gonadotropin (eCG), produced by the endometrial cups of the placenta after the first trimester, is a specific glycoprotein that displays dual luteinizing hormone (LH)-like and follicle-stimulating hormone (FSH)-like effects in non-equid species. 35141446 1 86 gly glycoprotein 284:295 arg1 Equine chorionic gonadotropin Equine chorionic gonadotropin OGER chorionic gonadotropin Equine chorionic gonadotropin (eCG), produced by the endometrial cups of the placenta after the first trimester, is a specific glycoprotein that displays dual luteinizing hormone (LH)-like and follicle-stimulating hormone (FSH)-like effects in non-equid species. 31931062 8 5 gly fucosylated 1269:1279 arg1 highly fucosylated N-glycans highly fucosylated N-glycans Finally, rSHL1 and rHEL1 were comparable in their ability to detect highly fucosylated N-glycans within glycoproteins on the surface of SW1116 human colorectal carcinoma cells. 31931062 8 69 gly glycoproteins 1298:1310 arg1 glycoproteins glycoproteins Finally, rSHL1 and rHEL1 were comparable in their ability to detect highly fucosylated N-glycans within glycoproteins on the surface of SW1116 human colorectal carcinoma cells. 33149259 5 62 gly glycoforms 840:849 arg1 α2,3-SA glycoforms α2,3-SA glycoforms PUBTATOR 2 170589 PSA was immunoprecipitated and α2,6-SA were separated from α2,3-SA glycoforms using SNA affinity chromatography. 33620525 7 52 gly DCY120T 1100:1106 arg1 peptidoglycan DCY120T peptidoglycan Cterm DCY120T The amino acids in peptidoglycan of strain DCY120T were lysine, alanine, glutamic acid, and aspartic acid. 34712749 6 66 gly glycopeptides 1200:1212 arg2 Concanavalin A enriched glycopeptides Concanavalin A enriched glycopeptides glycopeptides The first one refers to the deglycoproteomics dataset, which covers nanoLC-MS/MS analysis of Concanavalin A enriched glycopeptides released by endoglycosidase digestion from A375 melanoma cell lysates. 33363672 6 84 gly glycopeptide 1017:1028 arg2 Initial glycopeptide identification Initial glycopeptide identification glycopeptide Initial glycopeptide identification based on MS/MS data was aided by the Byonic software. 31242281 1 49 gly glycoproteins 155:167 arg1 hydroxyproline-rich glycoproteins hydroxyproline-rich glycoproteins Fterm glycoproteins BACKGROUND AND AIMS Extensins are hydroxyproline-rich glycoproteins thought to strengthen the plant cell wall, one of the first barriers against pathogens, through intra- and intermolecular cross-links. 31242281 2 14 gly glycoprotein 400:411 arg1 the glycoprotein the glycoprotein Fterm glycoprotein The glycan moiety of extensins is believed to confer the correct structural conformation to the glycoprotein, leading to self-assembly within the cell wall that helps limit microbial adherence and invasion. 33404253 4 7 gly N-glycosylation 844:858 arg2 N-glycosylation sites N-glycosylation sites sites Electrophoresis showed that B. alcatraz venom differs from B. jararaca and B. insularis; however, N-glycan removal revealed similarities between them, indicating that the occupation of N-glycosylation sites contributes to interspecies variability in the B. jararaca complex. 31924694 5 28 gly N-glycosylation 1216:1230 arg2 over 1300 N-glycosylation sites over 1300 N-glycosylation sites sites N-glycopeptide enrichment via lectin capturing using the high mannose/paucimannose-binding lectin Concanavalin A, or the Rhizoctonia solani agglutinin which interacts with complex N-glycans, resulted in the identification of over 1300 N-glycosylation sites derived from over 600 glycoproteins. 31924694 5 33 gly N-glycopeptide 981:994 arg2 N-glycopeptide N-glycopeptide N-glycopeptide N-glycopeptide enrichment via lectin capturing using the high mannose/paucimannose-binding lectin Concanavalin A, or the Rhizoctonia solani agglutinin which interacts with complex N-glycans, resulted in the identification of over 1300 N-glycosylation sites derived from over 600 glycoproteins. 31924694 5 37 gly glycoproteins 1260:1272 arg1 over 600 glycoproteins over 600 glycoproteins Fterm glycoproteins N-glycopeptide enrichment via lectin capturing using the high mannose/paucimannose-binding lectin Concanavalin A, or the Rhizoctonia solani agglutinin which interacts with complex N-glycans, resulted in the identification of over 1300 N-glycosylation sites derived from over 600 glycoproteins. 32359163 8 35 gly glycosylation 1589:1601 arg2 glycosylation motifs glycosylation motifs motifs We reconstruct the overall evolutionary history of the FLAs, annotated with the changing domain architectures, glycosylation motifs, number and length of AG regions, and disordered region sequence features. 35573890 9 31 gly CIs 1283:1285 arg1 glycan variants CIs glycan variants OGER CIs Q9NSE2 Finally, an in-depth analysis of glycan variants of CIs was performed through the detection of enriched glycopeptides. 35573890 9 52 gly glycopeptides 1335:1347 arg2 enriched glycopeptides enriched glycopeptides glycopeptides Finally, an in-depth analysis of glycan variants of CIs was performed through the detection of enriched glycopeptides. 33539901 2 11 gly site 579:582 arg1 a C-terminal peptide a C-terminal peptide peptide In this study, recombinant single-chain Japanese eel Gths (rGth: rFsh and rLh), and recombinant chimeric Gths (rGth-hCTPs: rFsh-hCTP and rLh-hCTP; rGth-eCTPs: rFsh-eCTP and rLh-eCTP) with an extra O-glycosylation site (either a C-terminal peptide of human (hCTP) or equine (eCTP) chorionic gonadotropin), which are known to prolong the half-life of glycoprotein were produced in HEK293 cells and highly purified. 33539901 2 62 gly O-glycosylation 563:577 arg2 an extra O-glycosylation site an extra O-glycosylation site site In this study, recombinant single-chain Japanese eel Gths (rGth: rFsh and rLh), and recombinant chimeric Gths (rGth-hCTPs: rFsh-hCTP and rLh-hCTP; rGth-eCTPs: rFsh-eCTP and rLh-eCTP) with an extra O-glycosylation site (either a C-terminal peptide of human (hCTP) or equine (eCTP) chorionic gonadotropin), which are known to prolong the half-life of glycoprotein were produced in HEK293 cells and highly purified. 33539901 2 96 gly glycoprotein 715:726 arg1 glycoprotein glycoprotein Fterm glycoprotein In this study, recombinant single-chain Japanese eel Gths (rGth: rFsh and rLh), and recombinant chimeric Gths (rGth-hCTPs: rFsh-hCTP and rLh-hCTP; rGth-eCTPs: rFsh-eCTP and rLh-eCTP) with an extra O-glycosylation site (either a C-terminal peptide of human (hCTP) or equine (eCTP) chorionic gonadotropin), which are known to prolong the half-life of glycoprotein were produced in HEK293 cells and highly purified. 35116628 2 92 gly NRG1 447:450 arg1 multiple glycan patterns NRG1 multiple glycan patterns PUBTATOR NRG1 3084 Our study explored its diagnostic value in distinguishing BRAF V600E mutant status in papillary thyroid cancer (PTC) patients by analyzing multiple glycan patterns of serum NRG1 through lectin assays. 31746729 8 48 gly C16  1222:1225 arg1 iso-C16  iso-C16  nov Q9UIW2 C16  The major fatty acids (>5 %) of strain SYSU K30003T were anteiso-C15:0, C16 : 0, anteiso-C17 : 0 and iso-C16 : 0, while those of strain SYSU K30004T were anteiso-C15:0, C16:0, anteiso-C17 : 0, iso-C15 : 0, iso-C16:0 and iso-C17 : 0. 33821278 7 60 gly modified 1230:1237 arg3 Asn 234 AND processed glycans S trimers Asn 234 processed glycans S trimers 43740568 Asn 234 Even Asn 234, a significant percentage of which is decorated by high-mannose glycans on soluble and virion S trimers, is predominantly modified in the Golgi by processed glycans. 33821278 7 78 gly glycans 1172:1178 arg1 soluble and virion S trimers S trimers glycans PUBTATOR S trimers 43740568 Even Asn 234, a significant percentage of which is decorated by high-mannose glycans on soluble and virion S trimers, is predominantly modified in the Golgi by processed glycans. 32127446 2 101 gly glycosylated 319:330 arg1 heavily glycosylated proteins heavily glycosylated proteins Fterm proteins The major structural components of mucus are heavily glycosylated proteins called mucins. 33295623 1 60 gly threonine 248:256 arg1 α-O-GalNAc threonine residues α-O-GalNAc threonine residues We have carried out a comparative study of the conformational impact of modifications to threonine residues of either α-O-Man or α-O-GalNAc in the context of a sequence from the mucin-like region of α-dystroglycan. 33295623 1 60 gly threonine 248:256 arg1 α-O-Man threonine residues α-O-Man threonine residues We have carried out a comparative study of the conformational impact of modifications to threonine residues of either α-O-Man or α-O-GalNAc in the context of a sequence from the mucin-like region of α-dystroglycan. 33125241 5 61 gly glycopeptides 873:885 arg2 short aliphatic O-linked glycopeptides short aliphatic O-linked glycopeptides glycopeptides Using three Burkholderia species (Burkholderia cenocepacia, Burkholderia Dolosa, and Burkholderia ubonensis), we demonstrate that short aliphatic O-linked glycopeptides are typically absent from HILIC enrichments, yet are readily identified in whole proteome samples. 31924694 9 75 gly N-glycosylation 1857:1871 arg1 proteins proteins Fterm proteins Both lectin blotting experiments as well as transcript expression analyses with complete insects and insect tissues confirmed the observed differences in N-glycosylation of proteins between sexes. 32359993 1 12 gly glycoprotein 132:143 arg1 a cell-surface glycoprotein a cell-surface glycoprotein Fterm glycoprotein The CD44 gene encodes a cell-surface glycoprotein that participates in a variety of biological processes such as cell interactions, adhesion, hematopoiesis, and tumor metastasis. 33821278 2 9 gly glycoprotein 243:254 arg1 The S glycoprotein The S glycoprotein Cterm S glycoprotein 43740568 The S glycoprotein is the major target for neutralizing antibodies elicited by natural infection and by vaccines. 32310329 8 52 gly glycosylation 1257:1269 arg1 proteins proteins Fterm proteins In addition, the established methodology can be readily applied to analyze glycosylation patterns of proteins with more than 2000 amino acids. 33301522 2 45 gly N-glycopeptides 437:451 arg2 intact N-glycopeptides intact N-glycopeptides N-glycopeptides The sample pre-processing method used for the analysis of intact N-glycopeptides usually depends on the enrichment of low abundance N-glycopeptides from a tryptic peptide mixture using hydrophilic substances before LC-MS/MS detection. 33301522 2 62 gly N-glycopeptides 504:518 arg2 low abundance N-glycopeptides low abundance N-glycopeptides N-glycopeptides The sample pre-processing method used for the analysis of intact N-glycopeptides usually depends on the enrichment of low abundance N-glycopeptides from a tryptic peptide mixture using hydrophilic substances before LC-MS/MS detection. 33090600 2 1 gly N-glycosylation 311:325 arg1 Asn31 MOG Asn31 MOG Q16653 Asn31 Post-translational N-glycosylation of Asn31 of MOG seems to play a key role in modulating the immune response towards myelin. 32823755 5 0 gly residues 965:972 arg1 fructooligosaccharides residues fructooligosaccharides residues We investigated the effect of milk supplementation with a combination of two well-known prebiotics, fructooligosaccharides (FOS) from sugar beet and garlic residues (all together named as "additive"), exerted on preweaned lamb growth and the composition of their fecal microbiota, by using 16S rRNA gene amplicon high-throughput sequencing. 32823755 5 45 gly beet 949:952 arg1 FOS FOS beet OGER FOS P01100 We investigated the effect of milk supplementation with a combination of two well-known prebiotics, fructooligosaccharides (FOS) from sugar beet and garlic residues (all together named as "additive"), exerted on preweaned lamb growth and the composition of their fecal microbiota, by using 16S rRNA gene amplicon high-throughput sequencing. 33726981 1 3 gly glycoproteins 166:178 arg1 glycoproteins glycoproteins Fterm glycoproteins Changes in glycan levels could directly affect the biochemical properties of glycoproteins and thus influence their physiological functions. 34482828 16 70 gly glycosylation 2330:2342 arg2 the N-linked glycosylation site the N-linked glycosylation site site The findings of this study suggest that the LH-like and FSH-like activities of eCG are regulated by the N-linked glycosylation site at Asn56 of the eCG α-subunit and/or by the O-linked glycosylation sites of the eCG β-subunit. 34482828 16 87 gly glycosylation 2402:2414 arg2 the O-linked glycosylation sites β-subunit sites Fterm β-subunit sites The findings of this study suggest that the LH-like and FSH-like activities of eCG are regulated by the N-linked glycosylation site at Asn56 of the eCG α-subunit and/or by the O-linked glycosylation sites of the eCG β-subunit. 33038510 2 9 gly glycoproteins 493:505 arg1 glycoproteins glycoproteins Fterm glycoproteins Since PDA shows an altered glycan expression, here we have focused on finding novel potential biomarkers, namely glycoproteins that express the tumor associated carbohydrate structure sialyl-Lewis x (sLex), which is described in PDA. 32531254 5 22 gly glycosylation 1179:1191 arg2 the O-linked glycosylation site the O-linked glycosylation site site This implicated glycosylation as a factor in antibody recognition and synthetic peptides spanning the two N-linked and one O-linked glycosylation regions showed that SHBG recognition by monoclonal antibody 7H9 could be disrupted by a peptide spanning the O-linked glycosylation site. 32310329 6 60 gly N-glycopeptides 953:967 arg2 57 unique N-glycopeptides 57 unique N-glycopeptides N-glycopeptides RESULTS/CONCLUSION A total of 57 unique N-glycopeptides and 51 O-glycopeptides were identified, which were categorized into 40 N-glycan and 17 O-glycan compositions. 32310329 6 61 gly O-glycopeptides 976:990 arg2 51 O-glycopeptides 51 O-glycopeptides O-glycopeptides RESULTS/CONCLUSION A total of 57 unique N-glycopeptides and 51 O-glycopeptides were identified, which were categorized into 40 N-glycan and 17 O-glycan compositions. 32752259 5 1 gly glycoproteins 833:845 arg1 most CRC glycoproteins most CRC glycoproteins Fterm glycoproteins However, we failed to detect the presence of O-linked Tn and STn glycans on most CRC glycoproteins recognized by MGL. 32752259 5 60 gly presence 781:788 arg2 most CRC glycoproteins AND STn glycans most CRC glycoproteins STn glycans Fterm glycoproteins However, we failed to detect the presence of O-linked Tn and STn glycans on most CRC glycoproteins recognized by MGL. 33627655 8 11 gly sialylated 1251:1260 arg1 sialylated glycans sialylated glycans This work highlights a critical role for sialylated glycans in controlling immune suppression and provides new potential targets for cancer immunotherapy in PDAC. 34163440 6 51 gly N-glycoproteins 1037:1051 arg1 differentially expressed N-glycoproteins differentially expressed N-glycoproteins Fterm N-glycoproteins For the N-glycoproteome, the numbers of differentially expressed N-glycoproteins were 160, 176, and 128 in T50/T30, T55/T30, and T55/T50, respectively. 32376684 5 83 gly modified 855:862 arg3 Asn-493 AND N-glycans Asn-493 N-glycans EOGT 285203 Asn-493 Within these sites, we found that Asn-263 and Asn-354, but not Asn-493, are modified with N-glycans. 32376684 5 83 gly modified 855:862 arg3 Asn-354 AND N-glycans Asn-263 and Asn-354 N-glycans EOGT 285203 Asn-263 and Asn-354 Within these sites, we found that Asn-263 and Asn-354, but not Asn-493, are modified with N-glycans. 33363672 7 43 gly glycopeptides 1285:1297 arg2 confidently annotated glycopeptides confidently annotated glycopeptides glycopeptides Additional MS1-based glycopeptide identification relying on accurate mass and retention time differences using GlycopeptideGraphMS considerably expanded the set of confidently annotated glycopeptides. 33363672 7 90 gly glycopeptide 1120:1131 arg2 Additional MS1-based glycopeptide identification relying Additional MS1-based glycopeptide identification relying glycopeptide Additional MS1-based glycopeptide identification relying on accurate mass and retention time differences using GlycopeptideGraphMS considerably expanded the set of confidently annotated glycopeptides.