doc_id	sent_index	relation_id	relation	trigger	trigger_offset	arg_num	arg_base_np	arg_protein	arg_domain	arg_site	arg_sugar	PSource	SiteSource	NProtein	NID	SiteName	sent_text
33539901	10	47	gly	sialylated	2240:2249	arg1	sialylated antennae				sialylated antennae						These findings strongly suggest that hCTP enhances the in vivo biological activity of recombinant Japanese eel Gths due to the high abundance of O-linked glycans with sialylated antennae.
33295623	4	12	gly	α-dystroglycan	602:615	arg1	an unmodified peptide Ac- PPTTTTKKP-NH2 sequence			an unmodified peptide Ac- PPTTTTKKP-NH2 sequence	an unmodified peptide Ac- PPTTTTKKP-NH2 sequence		Site			sequence	Comparing the results for an unmodified peptide Ac- PPTTTTKKP-NH2 sequence from α-dystroglycan, and glycoconjugates with either modification on the Ts, we find that the impact of the α-O-Man modification on the peptide scaffold is quite limited, while that of the α-O-GalNAc is more profound.
33999796	11	22	part_of	strain	1146:1151	arg1	The closed genome sequence	strain		The closed genome sequence		Fterm	Site	strain		sequence	The closed genome sequence of the strain was very small (1.4 Mbp) and had a DNA G+C content of 54.8 mol%.
33363672	10	100	gly	glycopeptides	1704:1716	arg2	several IgA glycopeptides			several IgA glycopeptides						glycopeptides	Partial cysteine oxidation was identified as an unexpectedly abundant peptide modification and impaired the automated processing of several IgA glycopeptides.
33068039	0	77	gly	glycoprotein	51:62	arg1	Machupo virus glycoprotein	Machupo virus glycoprotein				Fterm		glycoprotein			Tuning the binding interface between Machupo virus glycoprotein and human transferrin receptor.
32310329	0	67	gly	glycoprotein	138:149	arg1	a multidomain glycoprotein	a multidomain glycoprotein				Fterm		glycoprotein			Comprehensive N- and O-glycosylation mapping of human coagulation factor V. BACKGROUND/OBJECTIVE Coagulation factor V (FV), a multidomain glycoprotein, is an essential cofactor in the blood clotting cascade.
33301522	1	1	gly	N-glycopeptide	181:194	arg2	Native intact N-glycopeptide analysis			Native intact N-glycopeptide analysis						N-glycopeptide	Native intact N-glycopeptide analysis can provide access to the comprehensive characteristics of N-glycan occupancy, including N-glycosites, N-glycan compositions, and N-glycoproteins for complex samples.
33301522	1	24	gly	N-glycoproteins	335:349	arg1	N-glycoproteins	N-glycoproteins				Fterm		N-glycoproteins			Native intact N-glycopeptide analysis can provide access to the comprehensive characteristics of N-glycan occupancy, including N-glycosites, N-glycan compositions, and N-glycoproteins for complex samples.
33301522	1	39	gly	N-glycosites	294:305	arg2	N-glycosites			N-glycosites						N-glycosites	Native intact N-glycopeptide analysis can provide access to the comprehensive characteristics of N-glycan occupancy, including N-glycosites, N-glycan compositions, and N-glycoproteins for complex samples.
31967953	8	49	gly	A4α	837:839	arg1	l-Lys-Gly-l-Glu			l-Lys-Gly-l-Glu						Glu	The peptidoglycan type of RB2T was A4α, l-Lys-Gly-l-Glu.
35141446	3	48	gly	glycosylation	733:745	arg2	the O-linked glycosylation sites			the O-linked glycosylation sites						sites	To identify the specific biological functions of glycosylated sites in eCG, we constructed the following site mutants of N- and O-linked glycosylation: eCGβ/αΔ56, substitution of α-subunit56 N-linked glycosylation site; eCGβ-D/α, deletion of the O-linked glycosylation sites at the β-subunit, and eCGβ-D/αΔ56, double mutant.
35141446	3	72	gly	glycosylated	527:538	arg1	glycosylated sites			glycosylated sites						sites	To identify the specific biological functions of glycosylated sites in eCG, we constructed the following site mutants of N- and O-linked glycosylation: eCGβ/αΔ56, substitution of α-subunit56 N-linked glycosylation site; eCGβ-D/α, deletion of the O-linked glycosylation sites at the β-subunit, and eCGβ-D/αΔ56, double mutant.
35141446	3	99	gly	glycosylation	678:690	arg2	α-subunit56 N-linked glycosylation site			α-subunit56 N-linked glycosylation site						site	To identify the specific biological functions of glycosylated sites in eCG, we constructed the following site mutants of N- and O-linked glycosylation: eCGβ/αΔ56, substitution of α-subunit56 N-linked glycosylation site; eCGβ-D/α, deletion of the O-linked glycosylation sites at the β-subunit, and eCGβ-D/αΔ56, double mutant.
34118572	4	38	gly	composition	1202:1212	arg1	monosaccharide composition			position	monosaccharide composition					position	It was found that the molecular weight range and monosaccharide composition of polysaccharides, as well as the composition of small molecules, were identical between MHD and cSHD.
35237590	6	49	part_of	fat	1099:1101	arg1	fat deposition	fat		fat deposition		PUBTATOR	Site	fat	12491	position	SJP reduced weight gain and fat deposition in HFD-fed mice and increased the concentration of total SCFAs, including acetate, propionate, and butyrate in the feces.
34123172	5	11	gly	glycosylation	984:996	arg2	glycosylation sites			glycosylation sites						sites	In addition, the large set of binding data collected allows us to examine the relationship between binding affinity and the correlation in motion between pairs of glycosylation sites.
33068039	3	61	gly	glycoprotein	610:621	arg1	glycoprotein sequence homology	glycoprotein sequence homology				Fterm		glycoprotein			Study of the experimental structure of Machupo virus glycoprotein 1 (MGP1) in complex with TfR and glycoprotein sequence homology has identified some residues at the interface that influence binding.
33068039	3	65	gly	glycoprotein	564:575	arg1	Machupo virus glycoprotein 1	Machupo virus glycoprotein 1				Fterm		glycoprotein 1			Study of the experimental structure of Machupo virus glycoprotein 1 (MGP1) in complex with TfR and glycoprotein sequence homology has identified some residues at the interface that influence binding.
33231591	0	135	gly	composition	116:126	arg1	a high-fat fructose-rich diet			position	a high-fat fructose-rich diet					position	Effects of dietary fibre and protein content on intestinal fibre degradation, short-chain fatty acid and microbiota composition in a high-fat fructose-rich diet induced obese Göttingen Minipig model.
34298952	5	44	gly	glycoproteins	1055:1067	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			In the current work, we applied two plant lectins capable of distinguishing glycoepitopes with terminal GalNAc and Gal to identify glycoproteins that are their efficient carriers.
33815695	5	38	part_of	protein	951:957	arg1	composition	protein		composition		Fterm	Site	protein		position	Furthermore, we detected variability in the amount and composition of protein, nucleic acid and peptidoglycan cargo carried by MVs from each S. aureus strain.
34576227	7	67	part_of	ECM	1341:1343	arg1	the native ECM composition	ECM		the native ECM composition		OGER	Site	ECM	Q13201	position	Our decellularization protocol rapidly and effectively removed cellular and nuclear material while preserving the native ECM composition.
34516313	0	73	gly	polysialylated	82:95	arg1	novel polysialylated structures				novel polysialylated structures						High-resolution mass spectrometry reveals a complex ganglioside pattern and novel polysialylated structures associated with the human motor cortex.
33103831	6	61	gly	glycosylated	1220:1231	arg1	the O-linked and N-linked glycosylated proteins	the O-linked and N-linked glycosylated proteins				Fterm		proteins			The CEST contribution can be attributed to several phosphorylated products of GlcN, including uridine diphosphate-N-acetylglucosamine (UDP-GlcNAc), which is a substrate for the O-linked and N-linked glycosylated proteins that may be associated with the increase of the NOE signal.
32085685	5	48	part_of	NPs	1075:1077	arg1	composition	PEG NPs		composition		OGER	Site	PEG NPs	P09466	position	The structure, composition and morphology of Fe3O4@PAA/TMC/PEG NPs were characterized by TEM, FT-IR spectroscopy, DLS, zeta potential measurement, respectively.
33149572	10	65	part_of	C/H/GO/Cu	2108:2116	arg1	the multifunctional C/H/GO/Cu composite	H/GO		the multifunctional C/H/GO/Cu composite		PUBTATOR	Site	H/GO	3081	composite	Thus, the multifunctional C/H/GO/Cu composite is expected to be a potential alternative for wound dressings, especially for the management of intractable wounds caused by bacterial infection.
32310329	5	11	gly	glycopeptides	841:853	arg2	glycopeptides			glycopeptides						glycopeptides	METHODS In this study, we comprehensively mapped the glycosylation patterns of human plasma-derived FV by combining multienzyme digestion, hydrophilic interaction chromatography enrichment of glycopeptides, and alternated fragmentation mass spectrometry analysis.
32862508	6	22	gly	fucosylated	1069:1079	arg1	unique fucosylated LacdiNAc-extended N-linked and O-linked glycans				unique fucosylated LacdiNAc-extended N-linked and O-linked glycans						Furthermore, mass spectroscopy revealed the existence of unique fucosylated LacdiNAc-extended N-linked and O-linked glycans in the gill tissues, whereas beta-elimination experiments showed that MrNV-VLPs demonstrated a binding preference for N-glycans.
33149259	7	15	gly	sialylated	1067:1076	arg1	blood serum PSA sialylated glycoforms				blood serum PSA sialylated glycoforms						The results showed that blood serum PSA sialylated glycoforms containing GalNAc residues were largely increased in aggressive PCa patients, whereas the disialylated core fucosylated biantennary structures with α2,6-SA, which are the major PSA glycoforms in standard PSA from healthy individuals, were markedly reduced in aggressive PCa.
33149259	7	52	gly	glycoforms	1078:1087	arg1	blood serum PSA				blood serum PSA						The results showed that blood serum PSA sialylated glycoforms containing GalNAc residues were largely increased in aggressive PCa patients, whereas the disialylated core fucosylated biantennary structures with α2,6-SA, which are the major PSA glycoforms in standard PSA from healthy individuals, were markedly reduced in aggressive PCa.
33149259	7	89	gly	fucosylated	1197:1207	arg1	the disialylated core fucosylated biantennary structures				the disialylated core fucosylated biantennary structures						The results showed that blood serum PSA sialylated glycoforms containing GalNAc residues were largely increased in aggressive PCa patients, whereas the disialylated core fucosylated biantennary structures with α2,6-SA, which are the major PSA glycoforms in standard PSA from healthy individuals, were markedly reduced in aggressive PCa.
33149259	7	90	gly	disialylated	1179:1190	arg1	the disialylated core fucosylated biantennary structures				the disialylated core fucosylated biantennary structures						The results showed that blood serum PSA sialylated glycoforms containing GalNAc residues were largely increased in aggressive PCa patients, whereas the disialylated core fucosylated biantennary structures with α2,6-SA, which are the major PSA glycoforms in standard PSA from healthy individuals, were markedly reduced in aggressive PCa.
32885950	4	11	gly	used	817:820	arg2	ketone-d-Met			ketone-d-Met						Met	Newly synthesized azide-d-Leu and ketone-d-Met were used together with alkynyl-d-Ala for their metabolic assembly and then bioorthogonally encoded by the correspondingly fabricated DBCO-DOTA-Gd, HNO-DOTA-Eu, and azide-DOTA-Sm tags.
32885950	4	11	gly	used	817:820	arg2	Newly synthesized azide-d-Leu			Newly synthesized azide-d-Leu						Leu	Newly synthesized azide-d-Leu and ketone-d-Met were used together with alkynyl-d-Ala for their metabolic assembly and then bioorthogonally encoded by the correspondingly fabricated DBCO-DOTA-Gd, HNO-DOTA-Eu, and azide-DOTA-Sm tags.
34908474	9	25	part_of	composition	1623:1633	arg1	weaned pigs	pigs		composition		OGER	Site	pigs	Q96S52	position	Our study suggested that dietary supplemented with 2,000 mg/kg catalase was conducive to improve intestinal development and protect against LPS-induced intestinal mucosa injury via enhancing intestinal antioxidant capacity and altering microbiota composition in weaned pigs.
32442573	8	10	gly	used	1251:1254	arg2	MGCH nanocomposite			MGCH nanocomposite						nanocomposite	This work proves that MGCH nanocomposite can be used as high-performance adsorbent for removing of phenolic pollutants from contaminated wastewater.
33068039	6	64	part_of	TfR	1198:1200	arg1	solubilized ectodomain	TfR		solubilized ectodomain		PUBTATOR	Site	TfR	7037	ectodomain	By displaying MGP1 on yeast surface we have examined the contributions of individual residues to the binding of solubilized ectodomain of TfR.
35141446	8	96	gly	glycosylation	1452:1464	arg2	O-linked glycosylation sites			O-linked glycosylation sites						sites	Our results indicate that the biological activity of eCG is greatly affected by the removal of N- and O-linked glycosylation sites in cells expressing eLH/CGR.
32752259	4	46	gly	glycoproteins	676:688	arg1	the major MGL-binding glycoproteins	the major MGL-binding glycoproteins				Fterm		glycoproteins			We had recently identified the major MGL-binding glycoproteins in two high-MGL-binding CRC cells lines, HCT116 and HT29.
33086111	2	3	part_of	enzyme	394:399	arg1	enzyme deposition	enzyme		enzyme deposition		Fterm	Site	enzyme		position	The morphology of the fibers and enzyme deposition were confirmed by SEM images.
32862508	0	63	gly	fucosylated	67:77	arg1	fucosylated glycans				fucosylated glycans						Macrobrachium rosenbergii nodavirus virus-like particles attach to fucosylated glycans in the gills of the giant freshwater prawn.
34065932	0	52	part_of	Pectin	43:48	arg1	Composition	Pectin		Composition		Fterm	Site	Pectin		position	The Structure and Composition of Extracted Pectin and Residual Cell Wall Material from Processing Tomato: The Role of a Stepwise Approach versus High-Pressure Homogenization-Facilitated Acid Extraction.
32401138	1	10	part_of	gut	179:181	arg1	gut microbiota composition	gut		gut microbiota composition		PUBTATOR	Site	gut	110006	position	BACKGROUND Little data are available on the subject of gut microbiota composition in endurance athletes as well as connections between diet and specific bacteria abundance.
33821278	8	33	gly	glycosylation	1320:1332	arg2	Three incompletely occupied sites			Three incompletely occupied sites						sites	Three incompletely occupied sites of O-linked glycosylation were detected.
34445403	2	36	part_of	proteins	331:338	arg1	the composition	proteins		the composition		Fterm	Site	proteins		position	The present study evaluated the prophylactic effect of a diosmectite (FI5pp) on the clinical course, colon damage, expression of tight junction (TJ) proteins and the composition of the gut microbiota in dextran sulfate sodium (DSS) colitis.
34065932	0	52	gly	Pectin	43:48	arg1	Residual Cell Wall Material	Pectin			Residual Cell Wall Material	Fterm		Pectin			The Structure and Composition of Extracted Pectin and Residual Cell Wall Material from Processing Tomato: The Role of a Stepwise Approach versus High-Pressure Homogenization-Facilitated Acid Extraction.
33125241	3	72	gly	glycopeptides	599:611	arg2	glycopeptides			glycopeptides						glycopeptides	Despite its utility, HILIC enrichment is associated with a number of shortcomings, including requiring large amounts of starting materials, potentially introducing chemical artifacts such as formylation when high concentrations of formic acid are used, and biasing/undersampling specific classes of glycopeptides.
33539901	5	74	gly	sialylation	1124:1134	arg1	N-glycans				N-glycans						Further analyses of glycans by liquid chromatography-mass spectrometry suggested that the species, amount, and degree of sialylation of N-glycans were comparable among recombinant Fshs and recombinant Lhs, while the amount of O-glycans with sialic acids in rGth-hCTPs was higher than that in the corresponding rGth-eCTPs.
33909078	1	34	gly	glycoproteins	287:299	arg1	glycoproteins	glycoproteins			N-	Fterm		glycoproteins			In the fission yeast Schizosaccharomyces pombe, α1,2- and α1,3-linked D-galactose (Gal) residues are transferred to N- and O-linked oligosaccharides of glycoproteins by galactosyltransferases.
33909078	1	34	gly	glycoproteins	287:299	arg1	glycoproteins	glycoproteins			O-linked oligosaccharides	Fterm		glycoproteins			In the fission yeast Schizosaccharomyces pombe, α1,2- and α1,3-linked D-galactose (Gal) residues are transferred to N- and O-linked oligosaccharides of glycoproteins by galactosyltransferases.
33295623	0	29	part_of	mucin-like	118:127	arg1	the mucin-like region	mucin		the mucin-like region		PUBTATOR	Site	mucin	100508689	region	Contrasting the conformational effects of α-O-GalNAc and α-O-Man glycan protein modifications and their impact on the mucin-like region of alpha-dystroglycan.
34712749	7	87	gly	glycoproteins	1324:1336	arg1	glycoproteins	glycoproteins			non-matured N-glycans	Fterm		glycoproteins			This allowed us to map the fraction of glycoproteins with non-matured N-glycans from A375 melanoma cells and find or validate N-glycosylation sites of proteins from the secretory pathway.
34712749	7	78	gly	N-glycosylation	1411:1425	arg2	N-glycosylation sites	proteins		sites		Fterm		proteins		sites	This allowed us to map the fraction of glycoproteins with non-matured N-glycans from A375 melanoma cells and find or validate N-glycosylation sites of proteins from the secretory pathway.
34318377	2	45	gly	used	518:521	arg2	The resultant composite			The resultant composite						composite	The resultant composite was used as an effective and novel sorbent for pipette-tip micro-solid phase extraction (PT-μSPE) of seven opioid analgesics (OAs) in biological samples followed by HPLC-UV analysis.
33535571	4	59	gly	α2,3-/α2,6-sialylated	955:975	arg1	α2,3-/α2,6-sialylated structures				α2,3-/α2,6-sialylated structures						In total, 62 N-glycan isomers spanning 41 glycan compositions primarily comprising complex-type core fucosylated, bisecting N-acetylglucosamine (GlcNAc), and α2,3-/α2,6-sialylated structures were profiled across all samples using label-free quantitation.
33404253	6	91	gly	N-glycosylation	1320:1334	arg2	N-glycosylation motifs			N-glycosylation motifs						motifs	The comparative glycoproteomic analysis of B. alcatraz venom with B. jararaca and B. insularis indicated that there may be differences in the utilization of N-glycosylation motifs among their different toxin classes.
32065575	7	38	gly	had	614:616	arg1	The strain AND cell wall peptidoglycan type A3α l-Lys-Gly	The strain			cell wall peptidoglycan type A3α l-Lys-Gly	Fterm		strain			The strain had cell wall peptidoglycan type A3α l-Lys-Gly.
32698067	2	35	part_of	ALG1	414:417	arg1	Monomer composition	ALG1		Monomer composition		PUBTATOR	Site	ALG1	56052	position	Monomer composition of ALG1 and ALG2 was determined from the 13C CP-MAS NMR spectra.
32698067	2	54	part_of	ALG2	423:426	arg1	Monomer composition	ALG2		Monomer composition		PUBTATOR	Site	ALG2	85365	position	Monomer composition of ALG1 and ALG2 was determined from the 13C CP-MAS NMR spectra.
32376684	3	58	gly	N-glycosylation	595:609	arg2	N-glycosylation sites			N-glycosylation sites						sites	Here, we identified N-glycosylation sites in mouse EOGT and elucidated their molecular functions.
33498853	0	37	part_of	Gut	43:45	arg1	Gut Microbial Composition	Modulates Gut		Gut Microbial Composition		PUBTATOR	Site	Modulates Gut	110006	position	Kale Attenuates Inflammation and Modulates Gut Microbial Composition and Function in C57BL/6J Mice with Diet-Induced Obesity.
32885670	1	43	gly	used	170:173	arg2	The carbon isotopic composition			The carbon isotopic composition						position	The carbon isotopic composition (δ13C) of foliage is often used as proxy for plant performance.
33942129	1	51	gly	glycoproteins	181:193	arg1	N-linked and O-linked glycoproteins	N-linked and O-linked glycoproteins				Fterm		glycoproteins			BACKGROUND Galectins are proteins that bind β-galactosides such as N-acetyllactosamine present in N-linked and O-linked glycoproteins and that seem to be implicated in inflammatory and immune responses as well as fibrotic mechanisms.
33942129	1	55	gly	present	148:154	arg1	N-linked and O-linked glycoproteins AND N-acetyllactosamine	N-linked and O-linked glycoproteins			N-acetyllactosamine	Fterm		glycoproteins			BACKGROUND Galectins are proteins that bind β-galactosides such as N-acetyllactosamine present in N-linked and O-linked glycoproteins and that seem to be implicated in inflammatory and immune responses as well as fibrotic mechanisms.
34576227	5	87	part_of	ECM	968:970	arg1	ECM composition	ECM		ECM composition		OGER	Site	ECM	Q13201	position	We evaluated the efficiency of decellularization and its effects on the ultrastructure and ECM composition of the human corneal limbus.
34602421	2	39	gly	composition	372:382	arg1	Crude Monkshood Polysaccharide			position	Crude Monkshood Polysaccharide					position	In the present study, Crude Monkshood Polysaccharide (CMP), another one natural composition component originated from the same herbal with aconitine, combined with aconitine to investigate the effects on HCC and immunity in vitro and in vivo.
34908474	13	42	part_of	composition	2322:2332	arg1	weaned pigs	pigs		composition		OGER	Site	pigs	Q96S52	position	Our current study suggested that dietary supplemented with 2,000 mg/kg CAT was conducive to improve intestinal development and protect against LPS-induced intestinal mucosa injury via enhancing intestinal antioxidant capacity and altering microbiota composition in weaned pigs.
31675290	12	17	part_of	2DFW10M-5T	1549:1558	arg1	the genome sequence	2DFW10M-5T		the genome sequence		Cterm	Site	2DFW10M-5T		sequence	The DNA G+C content calculated from the genome sequence of strain 2DFW10M-5T was 69.2 mol%.
32607725	2	50	part_of	NH6-79 T	299:306	arg1	the genome sequence	NH6-79		the genome sequence		Cterm	Site	NH6-79		sequence	Current study presents the genome sequence of Parvularcula flava strain NH6-79 T and its cellulolytic enzyme analysis.
31924694	6	10	gly	N-glycopeptides	1295:1309	arg2	these N-glycopeptides			these N-glycopeptides						N-glycopeptides	Comparison of these N-glycopeptides revealed striking differences in protein N-glycosylation between sexes.
32559834	5	75	part_of	strain	524:529	arg1	The 16S rRNA gene sequence	strain		The 16S rRNA gene sequence		Fterm	Site	strain		sequence	The 16S rRNA gene sequence of the strain revealed that it belongs to the genus Cutibacterium with a 98.0 % similarity value to the closest species, Cutibacterium acnes.
32897850	8	72	part_of	contained	633:641	arg1	The strain AND C16 	The strain		C16 		Fterm	SpecificSite	strain		C16 	The strain contained C16 : 0, summed feature 3, C17 : 0 10-methyl and C18 : 1 ω9c as the major fatty acids and MK-8(H4ω-cycl) as the major menaquinone.
33580179	4	3	part_of	regions	553:559	arg1	Cst-3	Cst-3		regions		PUBTATOR	Site	Cst-3	1471	regions	We discovered that Cst-3 is a HS-binding protein only at acidic pH. By NMR and site-directed mutagenesis, we identified two HS binding regions in Cst-3: the highly dynamic N-terminal segment and a flexible region located between residue 70-94.
33580179	4	6	part_of	region	624:629	arg1	Cst-3	Cst-3		region		PUBTATOR	Site	Cst-3	1471	region	We discovered that Cst-3 is a HS-binding protein only at acidic pH. By NMR and site-directed mutagenesis, we identified two HS binding regions in Cst-3: the highly dynamic N-terminal segment and a flexible region located between residue 70-94.
32125262	6	46	part_of	strain	698:703	arg1	the 16S rRNA gene sequence	strain		the 16S rRNA gene sequence		Fterm	Site	strain		sequence	Analysis of the 16S rRNA gene sequence of the strain showed an affiliation with the genus Microbulbifer, sharing 98.7, 98.4, 97.8 and 97.8 % sequence similarities to the closest relatives of Microbulbifer okinawensis ABABA23T, Microbulbifer pacificus SPO729T, Microbulbifer taiwanensis CC-LN1-12T and Microbulbifer gwangyangensis GY2T, respectively.
32173442	4	37	part_of	GO/HAP/Au	649:657	arg1	GO/HAP/Au nanocomposite	HAP		GO/HAP/Au nanocomposite		OGER	Site	HAP	P10826	nanocomposite	Graphene oxide/Hydroxyapatite/gold nanocomposite (GO/HAP/Au) was synthesized by simple hydrothermal method and GO/HAP/Au nanocomposite incorporated polymeric film was fabricated using gel casting method.
32459612	5	7	gly	sialylated	1099:1108	arg1	the sialylated receptor	the sialylated receptor				Fterm		receptor			Virus infectivity data from RP19 cells treated with sodium periodate, proteases (trypsin or bromelain) or metabolic inhibitors (dl-threo-1-phenyl-2-decanoylamino-3-morpholino-1-propanol, tunicamycin, or benzyl N-acetyl-α-d-galactosaminide) indicated that N-linked, but not O-linked, carbohydrates are part of the sialylated receptor and they are likely based on a membrane glycoprotein, rather than a glycolipid.
32459612	5	11	gly	glycoprotein	1159:1170	arg1	a membrane glycoprotein	a membrane glycoprotein				Fterm		glycoprotein			Virus infectivity data from RP19 cells treated with sodium periodate, proteases (trypsin or bromelain) or metabolic inhibitors (dl-threo-1-phenyl-2-decanoylamino-3-morpholino-1-propanol, tunicamycin, or benzyl N-acetyl-α-d-galactosaminide) indicated that N-linked, but not O-linked, carbohydrates are part of the sialylated receptor and they are likely based on a membrane glycoprotein, rather than a glycolipid.
32459612	5	70	gly	receptor	1110:1117	arg1	N-linked, but not O-linked, carbohydrates	receptor			N-linked, but not O-linked, carbohydrates	Fterm		receptor			Virus infectivity data from RP19 cells treated with sodium periodate, proteases (trypsin or bromelain) or metabolic inhibitors (dl-threo-1-phenyl-2-decanoylamino-3-morpholino-1-propanol, tunicamycin, or benzyl N-acetyl-α-d-galactosaminide) indicated that N-linked, but not O-linked, carbohydrates are part of the sialylated receptor and they are likely based on a membrane glycoprotein, rather than a glycolipid.
32195245	2	33	gly	Glycosylation	207:219	arg1	the IgG fragment crystallizable (Fc) region			the IgG fragment crystallizable (Fc) region						region	Glycosylation of the IgG fragment crystallizable (Fc) region is shown to vary in different physiological and pathological states.
33363672	4	57	gly	glycopeptide	653:664	arg2	a robust glycopeptide detection			a robust glycopeptide detection						glycopeptide	Here, a selection of these tools was combined and evaluated with the aim of establishing a robust glycopeptide detection and quantification workflow targeting enriched glycoproteins.
33363672	4	99	gly	glycoproteins	723:735	arg1	workflow targeting enriched glycoproteins	workflow targeting enriched glycoproteins				Fterm		glycoproteins			Here, a selection of these tools was combined and evaluated with the aim of establishing a robust glycopeptide detection and quantification workflow targeting enriched glycoproteins.
31894888	7	52	part_of	NPs	1388:1390	arg1	proper in situ deposition	Ag NPs		proper in situ deposition		OGER	Site	Ag NPs	P0C0P6	position	The antibacterial efficiency of the nanofibers was scrutinized against Escherichia coli and Staphylococcus aureus, revealing proper in situ deposition of Ag NPs and confirming the nanofibers are antibacterial in nature.
33149259	4	45	gly	sialylated	616:625	arg1	the main sialylated PSA glycoforms				the main sialylated PSA glycoforms						In this study, we have characterised the main sialylated PSA glycoforms from blood serum of aggressive PCa patients and have compared with those of standard PSA from healthy individuals' seminal plasma.
33149259	4	60	gly	glycoforms	631:640	arg1	the main sialylated PSA glycoforms				the main sialylated PSA glycoforms						In this study, we have characterised the main sialylated PSA glycoforms from blood serum of aggressive PCa patients and have compared with those of standard PSA from healthy individuals' seminal plasma.
33539901	4	18	gly	sialylated	965:974	arg1	highly sialylated O-linked oligosaccharides				highly sialylated O-linked oligosaccharides						In contrast, only rGth-hCTPs and rGth-eCTPs possessed highly sialylated O-linked oligosaccharides.
32006585	1	79	part_of	CTS-Cu	291:296	arg1	chitosan-based magnetic composite	CTS		chitosan-based magnetic composite		PUBTATOR	Site	CTS	7276	composite	In order to effectively remove reactive brilliant red (RBR) in aqueous solution, a novel Cu(II) coordinated chitosan-based magnetic composite (CTS-Cu@SiO2@Fe3O4) was prepared.
32603728	2	3	part_of	CS-AA/MWCNTs	377:388	arg1	the CS-AA/MWCNTs composite	CS		the CS-AA/MWCNTs composite		PUBTATOR	Site	CS	1431	composite	The synthesis of the CS-AA/MWCNTs composite was achieved using gamma radiation-induced template polymerization.
32781127	10	12	gly	occupied	2368:2375	arg2	the bone defect site			the bone defect site						site	Microscopic computed tomography (micro-CT) results demonstrated that the bone defect site was nearly occupied with newly formed bone at 12 weeks after implantation of EHSS/HAp with 70% SPI content into the defect.
34684428	3	101	gly	glycoproteins	661:673	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			Therefore, the main objective of the proposed research is to investigate how the intestinal microbiota of preterm and full-term infants differ in their ability to extract energy and nutrients from oligosaccharides and glycoproteins in human milk.
32272702	13	48	part_of	CS+RGEO	2147:2153	arg1	the CS+RGEO compositions	CS		the CS+RGEO compositions		PUBTATOR	Site	CS	170587	positions	The cytotoxicity analysis of the CS+RGEO compositions by the hemolysis technique agreed with in vivo results of the low toxicity observed.
31819985	5	57	part_of	IgA	749:751	arg1	an altered composition	IgA		an altered composition		OGER	Site	IgA	P11912	position	RESULTS We found that iNKT-deficient mice (iNKT-KO) had reduced levels of fecal IgA and an altered composition of the gut microbiota, with increased Bacteroidetes.
31961287	5	71	gly	anteiso-C15 	811:822	arg1	anteiso-C17 			anteiso-C17 						C17 	The peptidoglycan contains meso-diaminopimelic acid (mDAP) and the predominant fatty acids are anteiso-C15 : 0 (61.9 %) and anteiso-C17 : 0 (11.6 %), confirming that strain MS2379T has diagnostic features of other Paenibacillus species.
32038603	0	34	part_of	Regions	43:49	arg1	Pigs	Pigs		Regions		OGER		Pigs	Q96S52		Metagenomic Characterization of Intestinal Regions in Pigs With Contrasting Feed Efficiency.
33301522	5	55	gly	N-glycopeptides	1197:1211	arg2	intact N-glycopeptides			intact N-glycopeptides						N-glycopeptides	Finally, we found that the combination of Trypsin (B)/Lys-C digestion and zwitterionic HILIC (Zic-HILIC) enrichment significantly improved the mass spectrometric characterization of intact N-glycopeptides, increasing the number of identified intact N-glycopeptides and offering better analytical reproducibility.
33301522	5	70	gly	N-glycopeptides	1257:1271	arg2	identified intact N-glycopeptides			identified intact N-glycopeptides						N-glycopeptides	Finally, we found that the combination of Trypsin (B)/Lys-C digestion and zwitterionic HILIC (Zic-HILIC) enrichment significantly improved the mass spectrometric characterization of intact N-glycopeptides, increasing the number of identified intact N-glycopeptides and offering better analytical reproducibility.
35126378	7	32	gly	D-Ala	1236:1240	arg1	D-Ala L. plantarum peptidoglycan precursors			Ala	D-Ala L. plantarum peptidoglycan precursors					Ala	We further explored the regulation of the macrophage inflammatory response pathway by the wild-type and constructed strains, and found that these strains induced the MyD88-dependent TRAF6/MAPK pathway, and the increase in D-Ala L. plantarum peptidoglycan precursors increased the secretion of the inflammatory factors IL-6, IL-1β and TNF-α.
34360993	8	51	gly	found	1118:1122	arg1	the canonical four N-glycosylation sites AND HexNAc2Hex11			the canonical four N-glycosylation sites	HexNAc2Hex11					sites	Glycan analysis indicates that predominant glycoforms HexNAc2Hex8 and HexNAc2Hex11 are found at Asn119, Asn378, and Asn743, three of the canonical four N-glycosylation sites of human CP.
34360993	8	51	gly	found	1118:1122	arg2	the canonical four N-glycosylation sites AND HexNAc2Hex8			the canonical four N-glycosylation sites	HexNAc2Hex8					sites	Glycan analysis indicates that predominant glycoforms HexNAc2Hex8 and HexNAc2Hex11 are found at Asn119, Asn378, and Asn743, three of the canonical four N-glycosylation sites of human CP.
34360993	8	51	gly	found	1118:1122	arg1	Asn119 AND HexNAc2Hex11			Asn119, Asn378, and Asn743	HexNAc2Hex11					Asn119, Asn378, and Asn743	Glycan analysis indicates that predominant glycoforms HexNAc2Hex8 and HexNAc2Hex11 are found at Asn119, Asn378, and Asn743, three of the canonical four N-glycosylation sites of human CP.
34360993	8	51	gly	found	1118:1122	arg1	Asn378 AND HexNAc2Hex11			Asn119, Asn378, and Asn743	HexNAc2Hex11					Asn119, Asn378, and Asn743	Glycan analysis indicates that predominant glycoforms HexNAc2Hex8 and HexNAc2Hex11 are found at Asn119, Asn378, and Asn743, three of the canonical four N-glycosylation sites of human CP.
34360993	8	51	gly	found	1118:1122	arg1	Asn378 AND HexNAc2Hex11			Asn119, Asn378, and Asn743	HexNAc2Hex11					Asn119, Asn378, and Asn743	Glycan analysis indicates that predominant glycoforms HexNAc2Hex8 and HexNAc2Hex11 are found at Asn119, Asn378, and Asn743, three of the canonical four N-glycosylation sites of human CP.
34360993	8	51	gly	found	1118:1122	arg2	Asn119 AND HexNAc2Hex8			Asn119, Asn378, and Asn743	HexNAc2Hex8					Asn119, Asn378, and Asn743	Glycan analysis indicates that predominant glycoforms HexNAc2Hex8 and HexNAc2Hex11 are found at Asn119, Asn378, and Asn743, three of the canonical four N-glycosylation sites of human CP.
34360993	8	51	gly	found	1118:1122	arg2	Asn378 AND HexNAc2Hex8			Asn119, Asn378, and Asn743	HexNAc2Hex8					Asn119, Asn378, and Asn743	Glycan analysis indicates that predominant glycoforms HexNAc2Hex8 and HexNAc2Hex11 are found at Asn119, Asn378, and Asn743, three of the canonical four N-glycosylation sites of human CP.
34360993	8	51	gly	found	1118:1122	arg2	Asn378 AND HexNAc2Hex8			Asn119, Asn378, and Asn743	HexNAc2Hex8					Asn119, Asn378, and Asn743	Glycan analysis indicates that predominant glycoforms HexNAc2Hex8 and HexNAc2Hex11 are found at Asn119, Asn378, and Asn743, three of the canonical four N-glycosylation sites of human CP.
34360993	8	72	gly	N-glycosylation	1183:1197	arg1	human CP	CP		sites		PUBTATOR		CP	1356	sites	Glycan analysis indicates that predominant glycoforms HexNAc2Hex8 and HexNAc2Hex11 are found at Asn119, Asn378, and Asn743, three of the canonical four N-glycosylation sites of human CP.
34298952	8	69	gly	glycoproteins	1606:1618	arg1	the identified glycoproteins	the identified glycoproteins				Fterm		glycoproteins			STRING bioinformatics analysis linked the identified glycoproteins in the close network, indicating their involvement in immune (partially innate) processes.
34482828	6	135	gly	glycosylation	1317:1329	arg2	approximately 12 O-linked glycosylation sites			approximately 12 O-linked glycosylation sites						sites	However, the secretion of eCGβ-D/α and eCGβ-D/αΔ56, which lack approximately 12 O-linked glycosylation sites, was slightly delayed.
34863837	4	48	gly	glycosylated	744:755	arg1	the protein	the protein				Fterm		protein			High-resolution LC-MS analysis indicated that the protein is heterogeneously glycosylated and also contains multiple acetylations, occurring in the attached glycans.
34249773	3	92	part_of	gut	429:431	arg1	mouse gut microbiome composition	gut		mouse gut microbiome composition		PUBTATOR	Site	gut	110006	position	This study aimed to investigate the changes in mouse gut microbiome composition based on sex, AOM/DSS-induced colorectal cancer (CRC), and Nrf2 genotype.
34757957	0	3	part_of	mucilage/PVA	78:89	arg1	balangu seed mucilage/PVA composites	PVA		balangu seed mucilage/PVA composites		OGER	Site	PVA	P32926	composites	Biocompatibility of electrospun cell culture scaffolds made from balangu seed mucilage/PVA composites.
33480676	2	9	gly	glycoprotein	517:528	arg1	a blood-circulating glycoprotein	a blood-circulating glycoprotein				Fterm		glycoprotein			Taking advantage of boronic acid (BA) based SA-recognition chemistry, we here demonstrate a label-free, no enzymatic, potentiometric determination of fetuin, a blood-circulating glycoprotein implicated in physiological and various pathological states.
33301522	3	29	gly	N-glycopeptides	648:662	arg2	identified intact N-glycopeptides			identified intact N-glycopeptides						N-glycopeptides	However, the number of identified intact N-glycopeptides remains inadequate to achieve an in-depth profile of the N-glycosylation landscape.
32770506	4	29	part_of	protein	949:955	arg1	the protein composition	protein		the protein composition		Fterm	Site	protein		position	A detailed protocol is provided for the isolation of lipid rafts, by taking advantage of their resistance to Triton X-100 solubilization at 4 °C, followed by subsequent sucrose gradient centrifugation and analysis of the protein composition of the different gradient fractions by Western blotting.
34360993	8	70	part_of	CP	1214:1215	arg1	the canonical four N-glycosylation sites	CP		the canonical four N-glycosylation sites		PUBTATOR	Site	CP	1356	sites	Glycan analysis indicates that predominant glycoforms HexNAc2Hex8 and HexNAc2Hex11 are found at Asn119, Asn378, and Asn743, three of the canonical four N-glycosylation sites of human CP.
33090600	4	22	gly	asparagine	654:663	arg1	an unnatural Lewis X (LeX )-containing Fmoc-SPPS-compatible asparagine building block			asparagine	an unnatural Lewis X (LeX )-containing Fmoc-SPPS-compatible asparagine building block					asparagine	Here, we report the synthesis of an unnatural Lewis X (LeX )-containing Fmoc-SPPS-compatible asparagine building block (SPPS=solid-phase peptide synthesis), as well as asparagine building blocks containing two LeX -derived oligosaccharides: LacNAc and Fucα1-3GlcNAc.
33090600	4	59	gly	peptide	698:704	arg1	an unnatural Lewis X (LeX )-containing Fmoc-SPPS-compatible asparagine building block				an unnatural Lewis X (LeX )-containing Fmoc-SPPS-compatible asparagine building block						Here, we report the synthesis of an unnatural Lewis X (LeX )-containing Fmoc-SPPS-compatible asparagine building block (SPPS=solid-phase peptide synthesis), as well as asparagine building blocks containing two LeX -derived oligosaccharides: LacNAc and Fucα1-3GlcNAc.
31830181	4	1	gly	used	807:810	arg2	the designed nanocomposite			the designed nanocomposite						nanocomposite	Based on these features, the designed nanocomposite was used as a signal transducer to develop a colorimetric assay and multicolor imaging for accurate and sensitive detection of cancer cells.
32099019	0	11	part_of	Ash	70:72	arg1	Aluminosilicate Nanocomposites	Fly Ash		Aluminosilicate Nanocomposites		OGER	Site	Fly Ash	P62993	Nanocomposites	Aluminosilicate Nanocomposites from Incinerated Chinese Holy Joss Fly Ash: A Potential Nanocarrier for Drug Cargos.
32565298	9	77	part_of	TiO2-PAM-CS	1409:1419	arg1	TiO2-PAM-CS composite	PAM		TiO2-PAM-CS composite		OGER	Site	PAM	P19021	composite	The reusability test showe that TiO2-PAM-CS composite can be renewed easily with HCl solution as an efficient adsorbent for practical wastewater treatment.
32899660	5	40	part_of	factor	585:590	arg1	growth factor composition	factor		growth factor composition		Fterm	Site	factor		position,	We explored growth factor composition, and mass-spectrometry metabolome and lipidome analyses of PEY to characterize it.
33038510	10	41	gly	glycoproteins	1837:1849	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			Glycan alterations on glycoconjugates, such as glycoproteins have emerged as a rich source for the identification of novel cancer markers.
33038510	10	98	gly	alterations	1797:1807	arg1	glycoproteins	glycoproteins			alterations	Fterm		glycoproteins			Glycan alterations on glycoconjugates, such as glycoproteins have emerged as a rich source for the identification of novel cancer markers.
33362841	2	53	part_of	FAS1	276:279	arg1	FAS1 domains	FAS1		FAS1 domains		OGER	Site	FAS1	P25445	domains	In addition to FAS1 domains, these multi-domain FLA proteins contain glycomotif regions predicted to direct addition of large arabinogalactan (AG) glycans and many contain signal sequences for addition of a glycosylphosphatidylinositol (GPI)-anchor to tether them to the plasma membrane.
33362841	2	21	part_of	contain	322:328	arg1	these multi-domain FLA proteins AND glycomotif regions	these multi-domain FLA proteins		glycomotif regions		PUBTATOR	Site	FLA proteins	829121	regions	In addition to FAS1 domains, these multi-domain FLA proteins contain glycomotif regions predicted to direct addition of large arabinogalactan (AG) glycans and many contain signal sequences for addition of a glycosylphosphatidylinositol (GPI)-anchor to tether them to the plasma membrane.
31931062	7	14	gly	glycoprotein	1122:1133	arg1	a fucosylated glycoprotein	a fucosylated glycoprotein				Fterm		glycoprotein			Isothermal calorimetry showed that compared with rHEL1, rSHL1 interacted more strongly with transferrin, a fucosylated glycoprotein, than with other fucosylated disaccharide glycoconjugates.
31931062	7	34	gly	fucosylated	1152:1162	arg1	other fucosylated disaccharide glycoconjugates				other fucosylated disaccharide glycoconjugates						Isothermal calorimetry showed that compared with rHEL1, rSHL1 interacted more strongly with transferrin, a fucosylated glycoprotein, than with other fucosylated disaccharide glycoconjugates.
31931062	7	44	gly	fucosylated	1110:1120	arg1	a fucosylated glycoprotein	a fucosylated glycoprotein				Fterm		glycoprotein			Isothermal calorimetry showed that compared with rHEL1, rSHL1 interacted more strongly with transferrin, a fucosylated glycoprotein, than with other fucosylated disaccharide glycoconjugates.
34298952	2	34	gly	glycoproteins	490:502	arg1	Seminal plasma glycoproteins	Seminal plasma glycoproteins				Fterm		glycoproteins			Seminal plasma glycoproteins are rich in the unique immunomodulatory glycoepitopes that may serve as ligands for endogenous lectins that decorate the surface of immune cells.
33432773	0	20	part_of	Arabinoxylan/graphene-oxide/nHAp-NPs/PVA	0:39	arg1	Arabinoxylan/graphene-oxide/nHAp-NPs/PVA bionano composite	PVA		Arabinoxylan/graphene-oxide/nHAp-NPs/PVA bionano composite		OGER	Site	PVA	P32926	composite	Arabinoxylan/graphene-oxide/nHAp-NPs/PVA bionano composite scaffolds for fractured bone healing.
32459612	0	52	gly	acid	49:52	arg1	N-linked glycoproteins	glycoproteins			acid	Fterm		glycoproteins			Turkey adenovirus 3, a siadenovirus, uses sialic acid on N-linked glycoproteins as a cellular receptor.
32459612	0	71	gly	glycoproteins	66:78	arg1	N-linked glycoproteins	N-linked glycoproteins				Fterm		glycoproteins			Turkey adenovirus 3, a siadenovirus, uses sialic acid on N-linked glycoproteins as a cellular receptor.
33295623	2	24	part_of	glycoprotein	432:443	arg1	this domain	glycoprotein		this domain		Fterm	Site	glycoprotein		domain	Both such modifications can coexist in this domain of the glycoprotein.
33100848	1	18	gly	composites	141:150	arg1	Plants polysaccharides			composites	Plants polysaccharides					composites	Plants polysaccharides are an infinite stock of drug composites with varying pharmacological and biological activities.
32131144	7	65	gly	proteins	1012:1019	arg1	poly(I:C)/D-GalN	proteins			poly(I:C)/D-GalN	Fterm		proteins			Among 80,195, and 23 specifically-expressed proteins in poly(I:C)/D-GalN, LPS/D-GalN, and CpG DNA/D-GalN groups, LPS/D-GalN-specific proteins are mostly distributed in the endoplasmic reticulum and more enriched in metabolic pathways, whereas poly (I:C)/D-GalN-specific proteins are mainly in the membrane and CpG DNA/D-GalN-specific proteins are related to the ribosome structural composition.
32131144	7	65	gly	proteins	1012:1019	arg1	CpG DNA/D-GalN groups	proteins			CpG DNA/D-GalN groups	Fterm		proteins			Among 80,195, and 23 specifically-expressed proteins in poly(I:C)/D-GalN, LPS/D-GalN, and CpG DNA/D-GalN groups, LPS/D-GalN-specific proteins are mostly distributed in the endoplasmic reticulum and more enriched in metabolic pathways, whereas poly (I:C)/D-GalN-specific proteins are mainly in the membrane and CpG DNA/D-GalN-specific proteins are related to the ribosome structural composition.
32131144	7	65	gly	proteins	1012:1019	arg1	LPS/D-GalN	proteins			LPS/D-GalN	Fterm		proteins			Among 80,195, and 23 specifically-expressed proteins in poly(I:C)/D-GalN, LPS/D-GalN, and CpG DNA/D-GalN groups, LPS/D-GalN-specific proteins are mostly distributed in the endoplasmic reticulum and more enriched in metabolic pathways, whereas poly (I:C)/D-GalN-specific proteins are mainly in the membrane and CpG DNA/D-GalN-specific proteins are related to the ribosome structural composition.
32919538	0	24	part_of	fibroin	29:35	arg1	fibroin composite	fibroin		fibroin composite		Fterm	Site	fibroin		composite	Graphene oxide/alginate/silk fibroin composite as a novel bionanostructure with improved blood compatibility, less toxicity and enhanced mechanical properties.
32897850	3	40	part_of	strain	238:243	arg1	The taxonomic position	strain		The taxonomic position		Fterm	Site	strain		position	The taxonomic position of the strain was characterized using a polyphasic approach.
34805251	0	26	part_of	Impact	0:5	arg1	Gut Microbiota Composition	Impact		Gut Microbiota Composition		OGER	Site	Impact	Q9P2X3	position	Impact of Prebiotic β-glucan Treatment at Juvenile Age on the Gut Microbiota Composition and the Eventual Type 1 Diabetes Onset in Non-obese Diabetic Mice.
31931062	6	75	gly	fucosylated	909:919	arg1	fucosylated N-glycans				fucosylated N-glycans						A glycan-array analysis revealed that the two recombinant lectins had different binding intensities toward fucosylated N-glycans harboring fucose-α(1,2) galactose or fucose-α(1,4) N-acetylglucosamine.
31463900	1	45	gly	modified	231:238	arg3	Metalloproteinases AND glycan moieties	Metalloproteinases			glycan moieties	Fterm		Metalloproteinases			Metalloproteinases of the ADAMTS (a disintegrin and metalloproteinase with thrombospondin type 1 repeats) superfamily are extensively modified with glycan moieties.
32376684	2	76	gly	N-glycosylation	422:436	arg2	putative N-glycosylation consensus sites			putative N-glycosylation consensus sites						sites	Several EOGT mutations that may affect putative N-glycosylation consensus sites are recorded in the cancer database, but the presence and function of N-glycans in EOGT have not yet been characterized.
32195245	6	22	part_of	IgG	995:997	arg1	IgG Fc regions	IgG		IgG Fc regions		PUBTATOR	Site	IgG	668542	regions	We observed slight changes in IgG Fc N-glycan profiles in different knock-outs; however, it seems that the strain background and sex have a stronger effect on N-glycosylation of IgG Fc regions than the FcγR repertoire.
32583466	8	106	part_of	ECM	1657:1659	arg1	ECM composition	ECM		ECM composition		OGER	Site	ECM	Q13201	position	Our results suggest that the NCAN rs1064395 A allele is associated with lower hippocampus-dependent memory function, variation of prefrontal cortex structure and ECM composition.
32385312	3	31	part_of	suberin	690:696	arg1	suberin monomeric composition	suberin		suberin monomeric composition		Fterm	Site	suberin		position	Since most cork properties arise from its chemical composition, this research studies the effect of drought on cork chemical composition (suberin, lignin, polysaccharides and extractives) and on polysaccharide and suberin monomeric composition.
31928547	0	59	gly	composition	73:83	arg1	lipopolysaccharide-challenged pigs			position	lipopolysaccharide-challenged pigs					position	Holly polyphenols alleviate intestinal inflammation and alter microbiota composition in lipopolysaccharide-challenged pigs.
33127381	6	41	gly	α1,2-fucosylated	859:874	arg1	CRS1	CRS1		sequence		PUBTATOR		CRS1	7291	sequence	In particular, cryptdin-related sequence 1 (CRS1) expressed in Paneth cells was found to be α1,2-fucosylated.
33127381	5	7	gly	glycopeptides	752:764	arg2	3212 O-linked and 2962 N-linked glycopeptides			3212 O-linked and 2962 N-linked glycopeptides						glycopeptides	Glycoproteomic analysis of ileal lysates identified 3212 O-linked and 2962 N-linked glycopeptides.
34712749	8	62	gly	glycoproteins	1514:1526	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			The same dataset was also used to define glycoproteins altered by the down-regulation of endogenous EDEM2, which should contain its candidate-substrates.
32678209	3	33	gly	glycoprotein	569:580	arg1	glycoprotein structures	glycoprotein structures				Fterm		glycoprotein			We analyze here the utilization of four disaccharides, lacto-N-biose (LNB), galacto-N-biose (GNB), fucosyl-α1,3-GlcNAc (3FN) and fucosyl-α1,6-GlcNAc (6FN), that form part of HMOs and glycoprotein structures, by the infant fecal microbiota.
32565298	8	14	part_of	PAM-CS	1095:1100	arg1	polyacrylamide-chitosan (PAM-CS) composite	PAM		polyacrylamide-chitosan (PAM-CS) composite		OGER	Site	PAM	P19021	composite	The interactions between amin groups of polyacrylamide-chitosan (PAM-CS) composite in from of NH3+ and molecules of anionic dye via hydrogen bond formation (Dye-NH3+), also electrostatic interactions between Ti+4 available in PAM-CS composite and anionic dye (free energy of 1.66 kJ/mol calculated from D-R model) govern the adsorption mechanism.
32777429	2	49	gly	used	379:382	arg2	The anionic polypeptide			The anionic polypeptide						polypeptide	The anionic polypeptide, poly-γ-glutamic acid (PG) and the glycosaminoglycan, hyaluronic acid, were used to stabilize ACZ-NS prepared using the antisolvent precipitation (AS-PT) coupled with sonication technique.
32777429	2	49	gly	used	379:382	arg2	poly-γ-glutamic acid			poly-γ-glutamic acid						glutamic acid	The anionic polypeptide, poly-γ-glutamic acid (PG) and the glycosaminoglycan, hyaluronic acid, were used to stabilize ACZ-NS prepared using the antisolvent precipitation (AS-PT) coupled with sonication technique.
32195245	2	55	part_of	IgG	228:230	arg1	the IgG fragment crystallizable (Fc) region	IgG		the IgG fragment crystallizable (Fc) region		PUBTATOR	Site	IgG	668542	region	Glycosylation of the IgG fragment crystallizable (Fc) region is shown to vary in different physiological and pathological states.
34277461	6	29	part_of	gut	1043:1045	arg1	gut microbial composition	gut		gut microbial composition		PUBTATOR	Site	gut	110006	position	16S rDNA sequencing of fecal samples was conducted to determine the changes in gut microbial composition.
35141446	9	87	part_of	rec-eCG	1675:1681	arg1	rec-eCG glycosylation sites	rec		rec-eCG glycosylation sites		OGER	Site	rec	Q9JKR5	sites	These results provide important information on rec-eCG in the regulation of specific glycosylation sites and improve our understanding of the specific biological activity of rec-eCG glycosylation sites in equidaes.
34544271	3	4	part_of	factors	582:588	arg1	vascular deposition	factors		vascular deposition		Fterm	Site	factors		position	These early changes include vascular deposition of neutrophil-derived proteins, shedding of vascular receptors, and altered levels of heparin/heparan sulfate-binding factors.
34544271	3	38	part_of	proteins	486:493	arg1	vascular deposition	proteins		vascular deposition		Fterm	Site	proteins		position	These early changes include vascular deposition of neutrophil-derived proteins, shedding of vascular receptors, and altered levels of heparin/heparan sulfate-binding factors.
34544271	3	92	part_of	receptors	517:525	arg1	vascular deposition	receptors		vascular deposition		Fterm	Site	receptors		position	These early changes include vascular deposition of neutrophil-derived proteins, shedding of vascular receptors, and altered levels of heparin/heparan sulfate-binding factors.
34157328	8	61	part_of	CNC	1266:1268	arg1	CNC doped ZnO nanocomposites	CNC		CNC doped ZnO nanocomposites		OGER	Site	CNC	P32418	nanocomposites	In silico findings suggested CNC doped ZnO nanocomposites as possible inhibitors of β-lactamase (Binding score: -7.936 kcal/mol), DHFR (Binding score: -5.691 kcal/mol) and FabI (Binding score: -8.673 kcal/mol).
34279376	7	54	gly	used	1263:1266	arg2	The algal biocomposite			The algal biocomposite						biocomposite	The algal biocomposite obtained according to our procedure can be used also as a prebiotic supplement.
33125241	2	2	gly	glycopeptide	191:202	arg2	Hydrophilic interaction liquid chromatography (HILIC) glycopeptide enrichment			Hydrophilic interaction liquid chromatography (HILIC) glycopeptide enrichment						glycopeptide	Hydrophilic interaction liquid chromatography (HILIC) glycopeptide enrichment is an indispensable tool for the high-throughput characterization of glycoproteomes.
33363672	11	72	gly	glycopeptide	1880:1891	arg2	MS/MS- and MS1-based glycopeptide identification			MS/MS- and MS1-based glycopeptide identification						glycopeptide	Finally, this study presents a semiautomated workflow for reliable glycoproteomic data analysis by the combination of software packages for MS/MS- and MS1-based glycopeptide identification as well as the integration of analyte quality control and quantification.
34542110	2	12	part_of	Multiple	218:225	arg1	dietary composition	Multiple		dietary composition		Cterm	Site	Multiple		position	Multiple factors including dietary composition contribute to its occurrence.
33038510	11	67	gly	glycoproteins	2052:2064	arg1	those glycoproteins	those glycoproteins				Fterm		glycoproteins			In the present work, we aimed to shed light on novel biomarkers based on altered glycosylation in PDA, in particular those glycoproteins of PDA tissues carrying the tumor carbohydrate antigen sialyl-Lewis x (sLex).
33038510	12	117	gly	glycoprotein	2202:2213	arg1	the glycoprotein MFAP4	the glycoprotein MFAP4				Fterm		glycoprotein			Through a glycoproteomic approach, we have shown that the glycoprotein MFAP4 carries sLex in PDA tissues and not in control pancreatic tissues.
32862508	5	62	gly	glycoproteins	990:1002	arg1	gill glycoproteins	gill glycoproteins				Fterm		glycoproteins			The broad, fucose-binding Aleuria Aurantia lectin (AAL) highly reduced MrNV-VLPs binding to gill tissue sections and lysates, and efficiently disrupted the specific interactions between the VLPs and gill glycoproteins.
31675290	6	59	part_of	2DFW10M-5T	657:666	arg1	The 16S rRNA gene sequence	2DFW10M-5T		The 16S rRNA gene sequence		Cterm	Site	2DFW10M-5T		sequence	The 16S rRNA gene sequence of strain 2DFW10M-5T showed the highest similarity to Gryllotalpicola daejeonensis RU-04T (98.4 %), Gryllotalpicola soli KIS12-7T (98.2 %), Gryllotalpicola kribbensis PU-02T (97.5 %), Gryllotalpicola koreensis RU-16T (97.4 %) and Gryllotalpicola reticulitermitis TS-56T (97.2 %).
32996878	11	26	gly	C16 	1917:1920	arg1	C19 			C19 						C19 	Peptidoglycan type of strain TMW 2.1615T is Lys-Ala and major fatty acids are C16 : 0, C19 : 0cyclo ω8c and summed feature 8.
34558859	0	14	part_of	Acid	103:106	arg1	Human-Like Bile Acid Composition	Human-Like Bile Acid		Human-Like Bile Acid Composition		PUBTATOR	Site	Human-Like Bile Acid	230101	position	Western Diet Changes Gut Microbiota and Ameliorates Liver Injury in a Mouse Model with Human-Like Bile Acid Composition.
34558859	0	28	part_of	Human-Like	87:96	arg1	Human-Like Bile Acid Composition	Human-Like Bile Acid		Human-Like Bile Acid Composition		PUBTATOR	Site	Human-Like Bile Acid	230101	position	Western Diet Changes Gut Microbiota and Ameliorates Liver Injury in a Mouse Model with Human-Like Bile Acid Composition.
34558859	0	78	part_of	Bile	98:101	arg1	Human-Like Bile Acid Composition	Human-Like Bile Acid		Human-Like Bile Acid Composition		PUBTATOR	Site	Human-Like Bile Acid	230101	position	Western Diet Changes Gut Microbiota and Ameliorates Liver Injury in a Mouse Model with Human-Like Bile Acid Composition.
31924694	11	36	gly	N-glycosylation	2040:2054	arg2	N-glycosylation sites			N-glycosylation sites						sites	Furthermore, original data on N-glycosylation sites of N. lugens adults are presented, providing novel insights into planthopper's biology and information for future biological pest control strategies.
33517204	9	80	gly	used	1111:1114	arg2	This nanocomposite			This nanocomposite						nanocomposite	This nanocomposite was used to increase the antibody loading and accelerate the electron transfer, which can increase the biosensor sensitivity.
35141446	3	44	part_of	β-subunit	760:768	arg1	the O-linked glycosylation sites	β-subunit		the O-linked glycosylation sites		Fterm	Site	β-subunit		sites	To identify the specific biological functions of glycosylated sites in eCG, we constructed the following site mutants of N- and O-linked glycosylation: eCGβ/αΔ56, substitution of α-subunit56 N-linked glycosylation site; eCGβ-D/α, deletion of the O-linked glycosylation sites at the β-subunit, and eCGβ-D/αΔ56, double mutant.
33301522	8	27	gly	N-glycosylated	1853:1866	arg1	N-glycosylated proteins	N-glycosylated proteins				Fterm		proteins			This study also provides an interesting comparison of the N-glycoproteome of breast cancer cells cultured in different growth conditions, indicating the important role of N-glycosylated proteins in cancer cell growth and the choice of the cell culture model for studies in tumor biology and drug evaluation.
33295623	6	35	gly	α-O-GalNAc-threonine	1066:1085	arg1	the α-O-GalNAc-threonine residue			threonine residue	the α-O-GalNAc-threonine residue					threonine residue	Further examination of the NMR-based structure and the MD results suggest a more extensive network of hydrogen bond interactions within the α-O-GalNAc-threonine residue than has been previously appreciated, which influences the properties of the protein backbone.
35141446	9	2	gly	glycosylation	1586:1598	arg2	specific glycosylation sites			specific glycosylation sites						sites	These results provide important information on rec-eCG in the regulation of specific glycosylation sites and improve our understanding of the specific biological activity of rec-eCG glycosylation sites in equidaes.
35141446	9	79	gly	glycosylation	1683:1695	arg2	rec-eCG glycosylation sites			rec-eCG glycosylation sites						sites	These results provide important information on rec-eCG in the regulation of specific glycosylation sites and improve our understanding of the specific biological activity of rec-eCG glycosylation sites in equidaes.
32375949	5	10	part_of	strain	316:321	arg1	The taxonomic position	strain		The taxonomic position		Fterm	Site	strain		position	The taxonomic position of the strain was investigated using a polyphasic taxonomic approach.
34555401	4	84	part_of	PVA/CNC/rGO/Ag	734:747	arg1	PVA/CNC/rGO/Ag nanocomposite	PVA		PVA/CNC/rGO/Ag nanocomposite		OGER	Site	PVA	P32926	nanocomposite	PVA/CNC/rGO/Ag nanocomposite showed the Ag+ ions sustained release from PVA studied using Inductively Coupled Plasma Mass Spectroscopy (ICP-MS).
34482828	2	36	gly	glycosylation	586:598	arg2	the following glycosylation site mutants			the following glycosylation site mutants						site	To examine the biological function of glycosylated sites in eCG, the following glycosylation site mutants were constructed: eCGβ/αΔ56, substitution of Asn56 of α-subunit with Gln; eCGβ-D/α, deletion of the O-linked glycosylation site at the carboxyl-terminal peptide (CTP) region of the β-subunit; eCGβ-D/αΔ56, double mutant.
34482828	2	111	gly	glycosylated	545:556	arg1	glycosylated sites			glycosylated sites						sites	To examine the biological function of glycosylated sites in eCG, the following glycosylation site mutants were constructed: eCGβ/αΔ56, substitution of Asn56 of α-subunit with Gln; eCGβ-D/α, deletion of the O-linked glycosylation site at the carboxyl-terminal peptide (CTP) region of the β-subunit; eCGβ-D/αΔ56, double mutant.
34482828	2	132	gly	glycosylation	722:734	arg2	the O-linked glycosylation site			the O-linked glycosylation site						site	To examine the biological function of glycosylated sites in eCG, the following glycosylation site mutants were constructed: eCGβ/αΔ56, substitution of Asn56 of α-subunit with Gln; eCGβ-D/α, deletion of the O-linked glycosylation site at the carboxyl-terminal peptide (CTP) region of the β-subunit; eCGβ-D/αΔ56, double mutant.
34482828	2	132	gly	glycosylation	722:734	arg2	the carboxyl-terminal peptide (CTP) region			the carboxyl-terminal peptide (CTP) region						region	To examine the biological function of glycosylated sites in eCG, the following glycosylation site mutants were constructed: eCGβ/αΔ56, substitution of Asn56 of α-subunit with Gln; eCGβ-D/α, deletion of the O-linked glycosylation site at the carboxyl-terminal peptide (CTP) region of the β-subunit; eCGβ-D/αΔ56, double mutant.
34482828	16	8	part_of	α-subunit	2369:2377	arg1	Asn56	α-subunit		Asn56		Fterm	AminoAcid	α-subunit		Asn56	The findings of this study suggest that the LH-like and FSH-like activities of eCG are regulated by the N-linked glycosylation site at Asn56 of the eCG α-subunit and/or by the O-linked glycosylation sites of the eCG β-subunit.
34482828	16	140	part_of	β-subunit	2433:2441	arg1	the O-linked glycosylation sites	β-subunit		the O-linked glycosylation sites		Fterm	Site	β-subunit		sites	The findings of this study suggest that the LH-like and FSH-like activities of eCG are regulated by the N-linked glycosylation site at Asn56 of the eCG α-subunit and/or by the O-linked glycosylation sites of the eCG β-subunit.
32152415	4	11	gly	hypo-sialylated	825:839	arg1	the pro-inflammatory hypo-sialylated T-antigen glycans				the pro-inflammatory hypo-sialylated T-antigen glycans						In particular, high levels of the pro-inflammatory hypo-sialylated T-antigen glycans and low levels of the anti-inflammatory fucosylated glycans were associated with higher abundance of glycan-degrading microbial species (in particular, Bacteroides vulgatus), a less diverse microbiome, higher levels of inflammation, and higher levels of ileum-associated HIV DNA.
32152415	4	15	gly	pro-inflammatory	808:823	arg1	the pro-inflammatory hypo-sialylated T-antigen glycans			pro	the pro-inflammatory hypo-sialylated T-antigen glycans					pro	In particular, high levels of the pro-inflammatory hypo-sialylated T-antigen glycans and low levels of the anti-inflammatory fucosylated glycans were associated with higher abundance of glycan-degrading microbial species (in particular, Bacteroides vulgatus), a less diverse microbiome, higher levels of inflammation, and higher levels of ileum-associated HIV DNA.
32152415	4	49	gly	fucosylated	899:909	arg1	the anti-inflammatory fucosylated glycans				the anti-inflammatory fucosylated glycans						In particular, high levels of the pro-inflammatory hypo-sialylated T-antigen glycans and low levels of the anti-inflammatory fucosylated glycans were associated with higher abundance of glycan-degrading microbial species (in particular, Bacteroides vulgatus), a less diverse microbiome, higher levels of inflammation, and higher levels of ileum-associated HIV DNA.
34440360	9	38	part_of	ECM	1437:1439	arg1	composition	ECM		composition		OGER	Site	ECM	Q13201	position,	Together, our findings have implications for the composition, organization, and regulation of the ovarian ECM in large mammalian species, including humans.
34196604	4	43	gly	observed	435:442	arg1	anteiso-C17 			anteiso-C17 						C17 	The typical chemotaxonomic properties of members of the genus Streptomyces were observed for strain CH5-8T, e.g. ll-diaminopimelic acid in cell peptidoglycan, MK-9(H8), MK-9(H6), and MK-9(H4) as major menaquinones and anteiso-C15 : 0, iso-C16 : 0, and anteiso-C17 : 0 as major fatty acids.
34383247	5	51	part_of	endolysin	658:666	arg1	sequence	endolysin		sequence		Fterm	Site	endolysin		sequence	An endolysin LysSAP33 encoded on bacteriophage SAP33 shared low homology with LysK-like endolysin in sequence by 41% and domain composition (CHAP-unknown CBD).
32359163	2	78	part_of	containing	270:279	arg1	proteins AND disordered regions	proteins		disordered regions		Fterm	Site	proteins		regions	Our understanding of the evolution of proteins containing disordered regions therefore lags that of globular proteins, limiting our capacity to estimate their evolutionary history, classify paralogs, and identify potential sequence-function relationships.
32694535	0	6	part_of	Impact	0:5	arg1	microbiota composition	Impact		microbiota composition		OGER	Site	Impact	Q9P2X3	position	Impact of PepT1 deletion on microbiota composition and colitis requires multiple generations.
32977599	3	81	gly	glycoprotein	397:408	arg1	the glycoprotein	the glycoprotein				Fterm		glycoprotein			Here, two structurally different anti-Ebola 13F6 antibodies, recognizing the heavily glycosylated mucin-like domain (MLD) of the glycoprotein (GP), were expressed in transgenic Nicotiana tabacum plants and designed as inexpensive and effective diagnostic antibodies against Ebola virus disease (EVD).
32977599	3	31	gly	glycosylated	353:364	arg1	the glycoprotein	glycoprotein		domain		Fterm		glycoprotein		domain	Here, two structurally different anti-Ebola 13F6 antibodies, recognizing the heavily glycosylated mucin-like domain (MLD) of the glycoprotein (GP), were expressed in transgenic Nicotiana tabacum plants and designed as inexpensive and effective diagnostic antibodies against Ebola virus disease (EVD).
32977599	3	31	gly	glycosylated	353:364	arg1	MLD	MLD		domain		OGER		MLD	O15121	domain	Here, two structurally different anti-Ebola 13F6 antibodies, recognizing the heavily glycosylated mucin-like domain (MLD) of the glycoprotein (GP), were expressed in transgenic Nicotiana tabacum plants and designed as inexpensive and effective diagnostic antibodies against Ebola virus disease (EVD).
31931062	0	63	gly	fucosylated	122:132	arg1	highly fucosylated N-glycans				highly fucosylated N-glycans						Ricin B-like lectin orthologues from two mushrooms, Hericium erinaceus and Stereum hirsutum, enable recognition of highly fucosylated N-glycans.
34482828	0	71	gly	glycosylation	31:43	arg2	N-linked and O-linked glycosylation sites			N-linked and O-linked glycosylation sites						sites	Roles of N-linked and O-linked glycosylation sites in the activity of equine chorionic gonadotropin in cells expressing rat luteinizing hormone/chorionic gonadotropin receptor and follicle-stimulating hormone receptor.
32423679	2	48	part_of	octyl-enzyme-PEI	652:667	arg1	the octyl-enzyme-PEI composite	enzyme		the octyl-enzyme-PEI composite		Fterm	Site	enzyme		composite	The enzymes were initially immobilized via interfacial activation on octyl-agarose beads, treated with polyethylenimine (PEI) and a new enzyme layer was immobilized on the octyl-enzyme-PEI composite by ion exchange, producing octyl-enzyme-PEI-enzyme biocatalysts.
34552927	1	11	gly	attached	266:273	arg1	core proteins AND Glycosaminoglycans	core proteins			Glycosaminoglycans	Fterm		proteins			Glycosaminoglycans (GAGs) including chondroitin sulfate, dermatan sulfate, heparan sulfate, and keratan sulfate, except for hyaluronan that is a free polysaccharide, are covalently attached to core proteins to form proteoglycans.
31924694	4	97	gly	glycopeptide	961:972	arg2	the glycopeptide level			the glycopeptide level						glycopeptide	A comprehensive investigation of the N-glycosylation sites from the adult stages of N. lugens was conducted, allowing a qualitative and quantitative comparison between sexes at the glycopeptide level.
31924694	4	106	gly	N-glycosylation	817:831	arg2	the N-glycosylation sites			the N-glycosylation sites						sites	A comprehensive investigation of the N-glycosylation sites from the adult stages of N. lugens was conducted, allowing a qualitative and quantitative comparison between sexes at the glycopeptide level.
32298636	1	74	part_of	Host	102:105	arg1	Host lipid composition	Host		Host lipid composition		OGER	Site	Host		position	Host lipid composition influences many stages of the influenza A virus (IAV) entry process, including initial binding of IAV to sialylated glycans, fusion between the viral envelope and the host membrane, and the formation of a fusion pore through which the viral genome is transferred into a target cell.
32877604	4	1	part_of	cohesin	691:697	arg1	cohesin binding domains	cohesin		cohesin binding domains		OGER	Site	cohesin		domains	In this work, we report an essential step in this endeavor-a display of designer enzyme-anchoring protein "scaffoldins", encompassing cohesin binding domains from divergent cellulolytic bacterial species on the P. putida surface.
33652358	5	79	gly	used	870:873	arg2	phytochemical compositions			phytochemical compositions						positions	METHODS Combined with biosynthetic pathway analysis, phytochemical compositions identified by UHPLC-Q-Orbitrap HRMS were used to build substantial phytochemical groups and further discover specific Q-markers.
32841408	3	43	gly	heterogeneity	362:374	arg1	glycan				glycan						Because of the heterogeneity of glycan, the structure of rhuEPO was complex with several isoforms.
35116628	9	39	gly	fucosylated	1255:1265	arg1	the fucosylated structures				the fucosylated structures						Both AAL ELISA and protein ELISA assays showed that the fucosylated structures of NRG1 had a remarkable increase in BRAF V600E mutant PTC patients compared with BRAF wild type PTC controls.
34866441	4	83	part_of	ECM	575:577	arg1	The ECM composition	ECM		The ECM composition		OGER	Site	ECM	Q13201	position	The ECM composition of benign human fallopian tube was first defined from a meta-analysis of published proteomic datasets that identified 190 ECM proteins.
32376684	6	70	gly	modified	974:981	arg1	both residues AND oligomannose N-glycans			both residues	oligomannose N-glycans					residues	Lectin blotting, endoglycosidase H digestion, and MS analysis revealed that both residues are modified with oligomannose N-glycans.
32607725	0	21	part_of	strain	44:49	arg1	Draft genome sequence	strain		Draft genome sequence		Fterm	Site	strain		sequence	Draft genome sequence of Parvularcula flava strain NH6-79 T, revealing its role as a cellulolytic enzymes producer.
33815695	5	38	gly	protein	951:957	arg1	peptidoglycan	protein			peptidoglycan	Fterm		protein			Furthermore, we detected variability in the amount and composition of protein, nucleic acid and peptidoglycan cargo carried by MVs from each S. aureus strain.
32359163	3	34	part_of	proteins	625:632	arg1	disordered regions	proteins		disordered regions		Fterm	Site	proteins		regions	Here, we overcome these limitations by using new analytical approaches that project representations of sequence space to dissect the evolution of proteins with both ordered and disordered regions, and the correlated changes between these.
33362841	1	78	gly	glycoproteins	246:258	arg1	extracellular glycoproteins	extracellular glycoproteins				Fterm		glycoproteins			The predominant Fascilin 1 (FAS1)-containing proteins in plants belong to the Fasciclin-Like Arabinogalactan-protein (FLA) family of extracellular glycoproteins.
32223833	6	18	gly	acid	886:889	arg1	the cell-wall peptidoglycan			glutamic acid, glycine	the cell-wall peptidoglycan					glutamic acid, glycine	The novel strain contained meso-diaminopimelic acid and 3-OH-diaminopimelic acid, d-glutamic acid, glycine and d-alanine in the cell-wall peptidoglycan.
32223833	6	29	gly	glycine	892:898	arg1	the cell-wall peptidoglycan			glutamic acid, glycine	the cell-wall peptidoglycan					glutamic acid, glycine	The novel strain contained meso-diaminopimelic acid and 3-OH-diaminopimelic acid, d-glutamic acid, glycine and d-alanine in the cell-wall peptidoglycan.
32223833	6	75	gly	d-alanine	904:912	arg1	the cell-wall peptidoglycan			alanine	the cell-wall peptidoglycan					alanine	The novel strain contained meso-diaminopimelic acid and 3-OH-diaminopimelic acid, d-glutamic acid, glycine and d-alanine in the cell-wall peptidoglycan.
33807914	3	43	gly	glycoprotein	511:522	arg1	the intestinal glycoprotein Mucin2	the intestinal glycoprotein Mucin2				Fterm		glycoprotein			Previous work has shown that fucose, the terminal glycan chain component of the intestinal glycoprotein Mucin2, and fucoidan polysaccharides have an anti-inflammatory effect in some mouse models of colitis.
34163440	7	41	gly	glycoproteins	1141:1153	arg1	The differential glycoproteins	The differential glycoproteins				Fterm		glycoproteins			The differential glycoproteins were mainly involved in various types of N-glycan biosynthesis, mRNA surveillance pathway, and protein processing in the endoplasmic reticulum.
34020817	2	84	gly	glycoprotein	245:256	arg1	The HIV-1 envelope (Env) glycoprotein	The HIV-1 envelope (Env) glycoprotein				Fterm		glycoprotein			The HIV-1 envelope (Env) glycoprotein trimer is covered by N-linked glycan comprising half its mass and requires both trimer assembly and subunit cleavage to fold into a prefusion-closed conformation.
32861200	8	69	part_of	gut	1260:1262	arg1	gut microbiota composition	gut		gut microbiota composition		PUBTATOR	Site	gut	110006	position	Prebiotic administration modulated gut microbiota composition and diversity, altering gut-metabolic (GMMs) and gut-brain (GBMs) modules and increased faecal acetic and propionic acid concentrations, but did not prevent adverse CIH-induced cardiorespiratory phenotypes.
34147122	8	16	part_of	CSLA	1370:1373	arg1	the CSLA protein sequence	CSLA		the CSLA protein sequence		Cterm	Site	CSLA		sequence	Interestingly, Pichia cell size could be increased or decreased depending on the composition of the CSLA protein sequence.
33363672	3	88	gly	glycopeptides	540:552	arg2	glycopeptides			glycopeptides						glycopeptides	In recent years, several bioinformatic tools were developed to facilitate and improve both the identification and quantification of glycopeptides.
33363672	0	49	gly	glycopeptide	67:78	arg2	maximized glycopeptide identification			maximized glycopeptide identification						glycopeptide	Semiautomated glycoproteomics data analysis workflow for maximized glycopeptide identification and reliable quantification.
33539901	0	22	part_of	gonadotropin	45:56	arg1	C-terminal peptide	chorionic gonadotropin		C-terminal peptide		OGER	Site	chorionic gonadotropin		peptide	C-terminal peptide (hCTP) of human chorionic gonadotropin enhances in vivo biological activity of recombinant Japanese eel follicle-stimulating hormone and luteinizing hormone produced in FreeStyle 293-F cell lines.
33539901	2	9	part_of	gonadotropin	656:667	arg1	a C-terminal peptide	chorionic gonadotropin		a C-terminal peptide		OGER	Site	chorionic gonadotropin		peptide	In this study, recombinant single-chain Japanese eel Gths (rGth: rFsh and rLh), and recombinant chimeric Gths (rGth-hCTPs: rFsh-hCTP and rLh-hCTP; rGth-eCTPs: rFsh-eCTP and rLh-eCTP) with an extra O-glycosylation site (either a C-terminal peptide of human (hCTP) or equine (eCTP) chorionic gonadotropin), which are known to prolong the half-life of glycoprotein were produced in HEK293 cells and highly purified.
33821278	6	40	gly	glycoprotein	1033:1044	arg1	the wild-type S glycoprotein N-linked glycans				the wild-type S glycoprotein N-linked glycans						Compared with soluble or solubilized S glycoproteins modified to prevent proteolytic cleavage and to retain a prefusion conformation, more of the wild-type S glycoprotein N-linked glycans are processed to complex forms.
33127381	4	44	gly	glycoproteins	587:599	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			However, glycoproteins in Paneth cells carrying α1,2-fucose have not yet been identified.
33044149	8	46	part_of	contained	946:954	arg1	The strain Q22T AND glutamic acid	Q22T		glutamic acid and glycine		Cterm	AminoAcid	Q22T		glutamic acid and glycine	The strain Q22T contained 2,4-diaminobutyric acid, alanine acid, glutamic acid and glycine in the peptidoglycans.
32385312	5	47	gly	suberin	1051:1057	arg1	polysaccharides	suberin			polysaccharides	Fterm		suberin			The results show that, in general, drought does not affect the proportion of the main components of cork, the monomers of suberin or of polysaccharides, with few exceptions e.g. drought increased ethanol extractives and xylose in polysaccharides and decreased arabinose in polysaccharides.
34866441	3	77	part_of	ECM	428:430	arg1	the ECM composition	ECM		the ECM composition		OGER	Site	ECM	Q13201	position	Therefore, we sought to determine the ECM composition of the benign fallopian tube and changes associated with serous tubal intraepithelial carcinomas (STICs), precursors of HGSOC.
33249594	6	1	part_of	N-terminal	932:941	arg1	C-terminal- and previously not identified N-terminal fragments	N-terminal		C-terminal- and previously not identified N-terminal fragments		Cterm	Site	N-terminal		fragments	Besides monomeric full-length Ng, also higher molecular weight forms of Ng, and C-terminal- and previously not identified N-terminal fragments were observed.
33249594	6	52	part_of	Ng	882:883	arg1	C-terminal- and previously not identified N-terminal fragments	Ng		C-terminal- and previously not identified N-terminal fragments		Cterm	Site	Ng	4900	fragments	Besides monomeric full-length Ng, also higher molecular weight forms of Ng, and C-terminal- and previously not identified N-terminal fragments were observed.
33295623	1	3	part_of	mucin-like	337:346	arg1	the mucin-like region	mucin		the mucin-like region		PUBTATOR	Site	mucin	100508689	region	We have carried out a comparative study of the conformational impact of modifications to threonine residues of either α-O-Man or α-O-GalNAc in the context of a sequence from the mucin-like region of α-dystroglycan.
33295623	1	37	part_of	region	348:353	arg1	a sequence	region		a sequence						sequence	We have carried out a comparative study of the conformational impact of modifications to threonine residues of either α-O-Man or α-O-GalNAc in the context of a sequence from the mucin-like region of α-dystroglycan.
33362841	4	28	part_of	FAS1	765:768	arg1	two FAS1 domains	FAS1		two FAS1 domains		OGER	Site	FAS1	P25445	domains	FLA group B members contain two FAS1 domains and are not predicted to be GPI-anchored.
32302275	3	35	part_of	strain	359:364	arg1	The taxonomic position	strain		The taxonomic position		Fterm	Site	strain		position	The taxonomic position of the strain was established by using a polyphasic taxonomic approach.
33363672	10	87	part_of	IgA	1700:1702	arg1	several IgA glycopeptides	IgA		several IgA glycopeptides		OGER	Site	IgA	P11912	glycopeptides	Partial cysteine oxidation was identified as an unexpectedly abundant peptide modification and impaired the automated processing of several IgA glycopeptides.
33090600	6	41	gly	neoglycopeptide	1229:1243	arg2	the neoglycopeptide			the neoglycopeptide						neoglycopeptide	Finally, a cytokine secretion assay was carried out on human monocyte-derived DCs, which showed the ability of the neoglycopeptide decorated with a single LeX to alter the balance of pro- and anti-inflammatory cytokines, inducing a tolerogenic response.
33809409	2	6	part_of	DEFICIENT	314:322	arg1	LlIDL (INFLORESCENCE DEFICIENT IN ABSCISSION) amino-acid sequence	LlIDL (INFLORESCENCE DEFICIENT IN ABSCISSION		LlIDL (INFLORESCENCE DEFICIENT IN ABSCISSION) amino-acid sequence		PUBTATOR	Site	LlIDL (INFLORESCENCE DEFICIENT IN ABSCISSION	843208	sequence	It has been previously shown that the EPIP peptide, a fragment of LlIDL (INFLORESCENCE DEFICIENT IN ABSCISSION) amino-acid sequence, is a sufficient molecule to induce flower abortion, however, the question remains: What are the exact changes evoked by this peptide locally in abscission zone (AZ) cells?
33809409	2	68	part_of	LlIDL	293:297	arg1	LlIDL (INFLORESCENCE DEFICIENT IN ABSCISSION) amino-acid sequence	LlIDL (INFLORESCENCE DEFICIENT IN ABSCISSION		LlIDL (INFLORESCENCE DEFICIENT IN ABSCISSION) amino-acid sequence		PUBTATOR	Site	LlIDL (INFLORESCENCE DEFICIENT IN ABSCISSION	843208	sequence	It has been previously shown that the EPIP peptide, a fragment of LlIDL (INFLORESCENCE DEFICIENT IN ABSCISSION) amino-acid sequence, is a sufficient molecule to induce flower abortion, however, the question remains: What are the exact changes evoked by this peptide locally in abscission zone (AZ) cells?
31924694	7	29	gly	N-glycosylation	1409:1423	arg2	Male- and female-specific N-glycosylation sites			Male- and female-specific N-glycosylation sites						sites	Male- and female-specific N-glycosylation sites were identified, and some of these sex-specific N-glycosylation sites were shown to be derived from proteins with a putative role in insect reproduction.
31924694	7	79	gly	N-glycosylation	1479:1493	arg2	these sex-specific N-glycosylation sites			these sex-specific N-glycosylation sites						sites	Male- and female-specific N-glycosylation sites were identified, and some of these sex-specific N-glycosylation sites were shown to be derived from proteins with a putative role in insect reproduction.
31931062	5	45	gly	glycoprotein	776:787	arg1	N-linked glycoprotein transferrin	N-linked glycoprotein transferrin				Fterm		glycoprotein			The hemagglutination activity of rSHL1 was inhibited by N-linked glycoprotein transferrin.
33363672	8	45	gly	glycopeptide	1304:1315	arg2	glycopeptide quantification			glycopeptide quantification						glycopeptide	For glycopeptide quantification, the performance of LaCyTools was compared to Skyline, and GlycopeptideGraphMS.
32583466	7	97	part_of	ECM	1478:1480	arg1	ECM composition	ECM		ECM composition		OGER	Site	ECM	Q13201	position	In silico eQTL analysis revealed that rs1064395 SNP is linked not only to increased prefrontal expression of the NCAN gene itself, but also of the neighbouring HAPLN4 gene, suggesting a more complex effect of the SNP on ECM composition.
34597329	3	8	part_of	factors	632:638	arg1	fungal community composition	factors		fungal community composition		Fterm	Site	factors		position	Combined with high-throughput gene sequencing technology, we investigated the relationships between microenvironment factors with fungal community composition and diversity during the decomposition of Salix psammophila sand barriers.
32861200	2	63	part_of	gut	407:409	arg1	gut microbiota composition	gut		gut microbiota composition		PUBTATOR	Site	gut	110006	position	Chronic intermittent hypoxia (CIH), modelling human sleep apnoea, affects gut microbiota composition and elicits cardiorespiratory morbidity.
34211273	10	3	gly	used	1707:1710	arg2	This potential composite			This potential composite						composite	This potential composite could be used as scaffolds in bone tissue engineering application after in vivo studies.
33529230	6	22	part_of	tPA	1232:1234	arg1	RBDv2 -human tPA signal peptide	tPA		peptide		PUBTATOR	Site	tPA	5327	peptide	RBDv1 contained a native viral signal peptide, RBDv2 -human tPA signal peptide.
33529230	6	27	part_of	RBDv2	1219:1223	arg1	RBDv2 -human tPA signal peptide	RBDv2		peptide		Cterm	Site	RBDv2		peptide	RBDv1 contained a native viral signal peptide, RBDv2 -human tPA signal peptide.
33301522	6	87	gly	N-glycopeptides	1395:1409	arg2	intact N-glycopeptides			intact N-glycopeptides						N-glycopeptides	Furthermore, the optimized workflow was applied to the analysis of intact N-glycopeptides in two-dimensional (2D) and three-dimensional (3D)-cultured breast cancer cells in vitro and xenografted tumors in mice.
34576834	6	55	gly	fucosylated	1249:1259	arg1	fucosylated glycans				fucosylated glycans						(3) Results: Among the main features discriminant for infants who did not experience any reported bronchitis (n = 80/106) or LRTI (n = 70/103) were the 2-HMO formula containing 2'FL and LNnT, higher acetate, fucosylated glycans and Bifidobacterium, as well as lower succinate, butyrate, propionate and 5-aminovalerate, along with Carnobacteriaceae members and Escherichia.
34482828	12	54	gly	glycosylation	1870:1882	arg2	Asn56			Asn56						Asn56	This indicated that the glycosylation site at Asn56 of the α-subunit plays a pivotal role in the LH-like activity of eCG.
34482828	12	54	gly	glycosylation	1870:1882	arg2	the glycosylation site			the glycosylation site						site	This indicated that the glycosylation site at Asn56 of the α-subunit plays a pivotal role in the LH-like activity of eCG.
32862508	7	50	gly	fucosylated	1354:1364	arg1	fucosylated N-glycans				fucosylated N-glycans						Therefore, the results from this study highly suggested that MrNV-VLPs preferentially attach to fucosylated N-glycans in the susceptible gill tissues, and these findings could lead to the development of strategies that target virus-host surface glycan interactions to reduce MrNV infections.
32359163	7	3	gly	glycosylation	1456:1468	arg2	the N-linked and O-linked glycosylation motifs			the N-linked and O-linked glycosylation motifs						motifs	Sequence features of the globular and disordered regions clearly correlate with one another, implying coevolution of these distinct regions, as well as with the N-linked and O-linked glycosylation motifs.
32386244	2	49	gly	used	538:541	arg2	The prepared nanocomposite			The prepared nanocomposite						nanocomposite	The prepared nanocomposite was used to isolate and preconcentrate celecoxib from human breast milk, urine and plasma samples.
32375988	5	59	part_of	strain	522:527	arg1	The 16S rRNA gene sequences	strain		The 16S rRNA gene sequences		Fterm	Site	strain		sequences	The 16S rRNA gene sequences of the strain showed 97.06-97.34, 96.17-96.31 and 95.93-96.07 % similarity to the type strains of Jeotgalibaca arthritidis, J. porci and J. dankookensis, respectively.
34249773	15	23	part_of	gut	2165:2167	arg1	the gut microbiota composition	gut		the gut microbiota composition		PUBTATOR	Site	gut	110006	position	In conclusion, Nrf2 differentially alters the gut microbiota composition depending on sex and CRC induction.
32977599	3	22	part_of	glycoprotein	397:408	arg1	the heavily glycosylated mucin-like domain	glycoprotein		the heavily glycosylated mucin-like domain		Fterm	Site	glycoprotein		domain	Here, two structurally different anti-Ebola 13F6 antibodies, recognizing the heavily glycosylated mucin-like domain (MLD) of the glycoprotein (GP), were expressed in transgenic Nicotiana tabacum plants and designed as inexpensive and effective diagnostic antibodies against Ebola virus disease (EVD).
32376684	8	55	gly	N-glycosylation	1225:1239	arg2	both N-glycosylation sites			both N-glycosylation sites						sites	However, simultaneous substitution of both N-glycosylation sites affected both EOGT maturation and expression levels without an apparent change in enzymatic activity, suggesting that N-glycosylation at a single site is sufficient for EOGT maturation and expression.
32376684	8	33	gly	N-glycosylation	1365:1379	arg1	a single site			site						site	However, simultaneous substitution of both N-glycosylation sites affected both EOGT maturation and expression levels without an apparent change in enzymatic activity, suggesting that N-glycosylation at a single site is sufficient for EOGT maturation and expression.
34440734	6	7	part_of	protein	808:814	arg1	selected pectic and arabinogalactan protein (AGP) epitopes	arabinogalactan protein		selected pectic and arabinogalactan protein (AGP) epitopes		PUBTATOR	Site	arabinogalactan protein	101210435	epitopes	The obtained results indicate that AuNP with different surface charges affects the presence and distribution of selected pectic and arabinogalactan protein (AGP) epitopes in the walls of root cells.
35126378	0	25	gly	D-Ala-Ended	10:20	arg1	D-Ala-Ended Peptidoglycan Precursors			Ala	D-Ala-Ended Peptidoglycan Precursors					Ala	Effect of D-Ala-Ended Peptidoglycan Precursors on the Immune Regulation of Lactobacillus plantarum Strains.
32823755	9	62	part_of	residues	1810:1817	arg1	FOS	FOS		residues		OGER	Site	FOS	P01100	residues	This study points out the combination of FOS from sugar beet and garlic residues as a potential prebiotic to be used in young ruminants' nutrition in order to improve production yields.
34015001	2	26	part_of	Factor	424:429	arg1	the Epidermal Growth Factor (EGF) domains	Factor (EGF		the Epidermal Growth Factor (EGF) domains		OGER	Site	Factor (EGF	P01133	domains	Cell adhesion in Arabidopsis may also be regulated through a pectin-related signaling cascade mediated by a putative O-fucosyltransferase ESMERALDA1 (ESMD1), and the Epidermal Growth Factor (EGF) domains of the pectin binding Wall associated Kinases (WAKs) are a primary candidate substrate for ESMD1 activity.
32998076	8	57	part_of	ECM	1317:1319	arg1	ECM composition	ECM		ECM composition		OGER	Site	ECM	Q13201	position,	The DUB scaffold retains organ architecture, ECM composition, and mechanical strength.
33125241	6	36	gly	glycopeptide	1233:1244	arg2	glycopeptide			glycopeptide						glycopeptide	Using high-field asymmetric waveform ion mobility spectrometry (FAIMS) fractionation, we show that at high compensation voltages (CVs), short aliphatic glycopeptides can be enriched from complex samples, providing an alternative means to identify glycopeptide recalcitrant to hydrophilic-based enrichment.
33125241	6	58	gly	glycopeptides	1138:1150	arg2	short aliphatic glycopeptides			short aliphatic glycopeptides						glycopeptides	Using high-field asymmetric waveform ion mobility spectrometry (FAIMS) fractionation, we show that at high compensation voltages (CVs), short aliphatic glycopeptides can be enriched from complex samples, providing an alternative means to identify glycopeptide recalcitrant to hydrophilic-based enrichment.
33127381	7	35	gly	modified	970:977	arg3	unique Thr residues AND O-glycans			unique Thr residues	O-glycans					Thr residues	Unlike other antimicrobial α-defensin proteins, CRS1 contains unique Thr residues, which are modified with O-glycans, with 3HexNAc2Hex1Fuc1NeuAc being the main glycoform.
33821278	1	10	gly	glycoprotein	172:183	arg1	its spike (S) glycoprotein	its spike (S) glycoprotein				Fterm		glycoprotein			The SARS-CoV-2 coronavirus, the etiologic agent of COVID-19, uses its spike (S) glycoprotein anchored in the viral membrane to enter host cells.
32672838	4	73	gly	glycoprotein	1215:1226	arg1	the glycoprotein	the glycoprotein				Fterm		glycoprotein			The presence of other sugars was not detected by 1 H NMR and HPAEC-PAD, suggesting that HPAs hydrolyze only the terminal glycosidic bond in the glycoprotein, resulting in the selective release of sialic acid from AGP.
33125241	10	30	gly	glycopeptides	1757:1769	arg2	access glycopeptides			access glycopeptides						glycopeptides	Taken together, these results demonstrate that FAIMS provides an alternative means to access glycopeptides and is a valuable tool for glycoproteomic analysis.
33044149	8	23	gly	glycine	1013:1019	arg1	the peptidoglycans			glutamic acid and glycine	the peptidoglycans					glutamic acid and glycine	The strain Q22T contained 2,4-diaminobutyric acid, alanine acid, glutamic acid and glycine in the peptidoglycans.
33044149	8	67	gly	acid	1004:1007	arg1	the peptidoglycans			glutamic acid and glycine	the peptidoglycans					glutamic acid and glycine	The strain Q22T contained 2,4-diaminobutyric acid, alanine acid, glutamic acid and glycine in the peptidoglycans.
32706435	4	28	gly	glycoproteins	580:592	arg1	H. hispanica S-layer glycoproteins	H. hispanica S-layer glycoproteins				Fterm		glycoproteins			Our previous work showed that H. hispanica S-layer glycoproteins are modified by an N-linked glucose-α-(1, 2)-[sulfoquinovosamine-β-(1, 6)-]galactose trisaccharide and an O-linked glucose-α-(1, 4)-galactose disaccharide.
34707140	0	68	part_of	strain	105:110	arg1	biochemical composition	strain		biochemical composition		Fterm	Site	strain		position	The effects of high-monosaccharide diets on development and biochemical composition of white-eyed mutant strain of house cricket (Acheta domesticus).
33362841	8	2	gly	glycosylation	1419:1431	arg1	cell wall glycoproteins	cell wall glycoproteins				Fterm		glycoproteins			A FLA16-YFP fusion protein driven by the endogenous putative FLA16 promoter in wild type background showed expression in cells with secondary cell walls, and FLA16 displayed characteristics of cell wall glycoproteins with moderate glycosylation.
33362841	8	4	gly	glycoproteins	1391:1403	arg1	cell wall glycoproteins	cell wall glycoproteins				Fterm		glycoproteins			A FLA16-YFP fusion protein driven by the endogenous putative FLA16 promoter in wild type background showed expression in cells with secondary cell walls, and FLA16 displayed characteristics of cell wall glycoproteins with moderate glycosylation.
32908918	5	75	gly	peptide	699:705	arg1	The glucagon-like peptide 2 (GLP-2) and lipopolysaccharide (LPS) levels				The glucagon-like peptide 2 (GLP-2) and lipopolysaccharide (LPS) levels						The glucagon-like peptide 2 (GLP-2) and lipopolysaccharide (LPS) levels in plasma and intestinal tissues were measured by ELISA and Limulus test, respectively.
33625776	0	36	part_of	lipoproteins	109:120	arg1	oxylipin composition	lipoproteins		oxylipin composition		Fterm	Site	lipoproteins		position	Effects of inflammation and soluble epoxide hydrolase inhibition on oxylipin composition of very low-density lipoproteins in isolated perfused rat livers.
33038510	13	95	gly	glycoform	2403:2411	arg1	its sLex glycoform				its sLex glycoform						MFAP4 is found in the extracellular matrix in PDA and although its role in cancer progression is unclear, its sLex glycoform could be a potential biomarker in pancreatic ductal adenocarcinoma.
32338160	6	35	part_of	protein	884:890	arg1	the protein composition	protein		the protein composition		Fterm	Site	protein		position	These data indicated that the protein composition in TGN and existence of the SVC are regulated by sugar availability.
35126378	8	47	gly	D-Ala-ended	1383:1393	arg1	D-Ala-ended peptidoglycan precursors			Ala	D-Ala-ended peptidoglycan precursors					Ala	These results indicate that D-Ala-ended peptidoglycan precursors play a central role in the variable immunomodulatory ability of L. plantarum.
32053092	8	82	gly	acids	1449:1453	arg1	d-alanine			d-alanine						alanine	The peptidoglycan type was supposed to be the B2ß with amino acids d-alanine, d-glutamic acid, glycine, l-homoserine and d-ornithine.
32053092	8	82	gly	acids	1449:1453	arg1	glycine			glutamic acid, glycine						glutamic acid, glycine	The peptidoglycan type was supposed to be the B2ß with amino acids d-alanine, d-glutamic acid, glycine, l-homoserine and d-ornithine.
32518945	2	39	gly	glycoproteins	343:355	arg1	heparin	heparin				Fterm		heparin			A subset of these are adept at scavenging host glycans within this environment, including mucin O-linked glycans, N-linked glycoproteins and highly sulfated glycosaminoglycans (GAGs) such as heparin (Hep) and chondroitin sulfate (CS).
32518945	2	39	gly	glycoproteins	343:355	arg1	N-linked glycoproteins	N-linked glycoproteins				Fterm		glycoproteins			A subset of these are adept at scavenging host glycans within this environment, including mucin O-linked glycans, N-linked glycoproteins and highly sulfated glycosaminoglycans (GAGs) such as heparin (Hep) and chondroitin sulfate (CS).
34482828	2	30	part_of	CTP	775:777	arg1	the carboxyl-terminal peptide (CTP) region	CTP		the carboxyl-terminal peptide (CTP) region		OGER	Site	CTP	P53007	region	To examine the biological function of glycosylated sites in eCG, the following glycosylation site mutants were constructed: eCGβ/αΔ56, substitution of Asn56 of α-subunit with Gln; eCGβ-D/α, deletion of the O-linked glycosylation site at the carboxyl-terminal peptide (CTP) region of the β-subunit; eCGβ-D/αΔ56, double mutant.
34482828	2	58	part_of	β-subunit	794:802	arg1	the carboxyl-terminal peptide (CTP) region	β-subunit		the carboxyl-terminal peptide (CTP) region		Fterm	Site	β-subunit		region	To examine the biological function of glycosylated sites in eCG, the following glycosylation site mutants were constructed: eCGβ/αΔ56, substitution of Asn56 of α-subunit with Gln; eCGβ-D/α, deletion of the O-linked glycosylation site at the carboxyl-terminal peptide (CTP) region of the β-subunit; eCGβ-D/αΔ56, double mutant.
34482828	2	113	part_of	α-subunit	667:675	arg1	Asn56	α-subunit		Asn56		Fterm	AminoAcid	α-subunit		Asn56	To examine the biological function of glycosylated sites in eCG, the following glycosylation site mutants were constructed: eCGβ/αΔ56, substitution of Asn56 of α-subunit with Gln; eCGβ-D/α, deletion of the O-linked glycosylation site at the carboxyl-terminal peptide (CTP) region of the β-subunit; eCGβ-D/αΔ56, double mutant.
34482828	2	142	part_of	region	780:785	arg1	the O-linked glycosylation site	region		the O-linked glycosylation site						site	To examine the biological function of glycosylated sites in eCG, the following glycosylation site mutants were constructed: eCGβ/αΔ56, substitution of Asn56 of α-subunit with Gln; eCGβ-D/α, deletion of the O-linked glycosylation site at the carboxyl-terminal peptide (CTP) region of the β-subunit; eCGβ-D/αΔ56, double mutant.
34482828	12	124	part_of	α-subunit	1905:1913	arg1	Asn56	α-subunit		Asn56		Fterm	AminoAcid	α-subunit		Asn56	This indicated that the glycosylation site at Asn56 of the α-subunit plays a pivotal role in the LH-like activity of eCG.
34482828	1	10	gly	glycoprotein	354:365	arg1	the glycoprotein hormone family	the glycoprotein hormone family				Fterm		glycoprotein			BACKGROUND Equine chorionic gonadotropin (eCG), which comprises highly glycosylated α-subunit and β-subunit, is a unique member of the glycoprotein hormone family as it elicits both follicle-stimulating hormone (FSH)-like and luteinizing hormone (LH)-like responses in non-equid species.
34482828	1	127	gly	glycosylated	290:301	arg1	highly glycosylated α-subunit	highly glycosylated α-subunit				Fterm		α-subunit			BACKGROUND Equine chorionic gonadotropin (eCG), which comprises highly glycosylated α-subunit and β-subunit, is a unique member of the glycoprotein hormone family as it elicits both follicle-stimulating hormone (FSH)-like and luteinizing hormone (LH)-like responses in non-equid species.
32459612	7	26	gly	attached	1505:1512	arg1	N-linked membrane glycoproteins AND terminal sialic acids	N-linked membrane glycoproteins			terminal sialic acids	Fterm		glycoproteins			We can conclude that terminal sialic acids attached to N-linked membrane glycoproteins on B cells are used for virus attachment and are essential for successful virus infection.
32459612	7	37	gly	glycoproteins	1535:1547	arg1	N-linked membrane glycoproteins	N-linked membrane glycoproteins				Fterm		glycoproteins			We can conclude that terminal sialic acids attached to N-linked membrane glycoproteins on B cells are used for virus attachment and are essential for successful virus infection.
33127381	0	56	gly	O-glycosylated	66:79	arg1	O-glycosylated protein	O-glycosylated protein				Fterm		protein			Glycoproteomic analysis identifies cryptdin-related sequence 1 as O-glycosylated protein modified with α1,2-fucose in the small intestine.
32823755	5	0	part_of	residues	965:972	arg1	FOS	FOS		residues		OGER	Site	FOS	P01100	residues	We investigated the effect of milk supplementation with a combination of two well-known prebiotics, fructooligosaccharides (FOS) from sugar beet and garlic residues (all together named as "additive"), exerted on preweaned lamb growth and the composition of their fecal microbiota, by using 16S rRNA gene amplicon high-throughput sequencing.
31928547	3	63	part_of	proteins	700:707	arg1	microbiota composition	proteins		microbiota composition		Fterm	Site	proteins		position	After 16 d of feeding with a basal diet supplemented with or without 250 mg/kg HP, pigs were challenged with LPS (100 μg/kg body weight) or an equal volume of saline for 4 h, followed by analysis of disaccharidase activities, gene expression levels of several representative tight junction proteins and inflammatory mediators, the SCFA concentrations and microbiota composition in intestinal contents as well as proinflammatory cytokine levels in plasma.
32603728	5	19	part_of	CS-AA/MWCNTs	893:904	arg1	the CS-AA/MWCNTs composite	CS		the CS-AA/MWCNTs composite		PUBTATOR	Site	CS	1431	composite	Interestingly, the CS-AA/MWCNTs composite depicted a selective adsorption of Sc(III) rather than Ti(IV) ions at pH 5 with adsorption efficiency of ~93.93%.
34123172	6	37	gly	glycosylation	1086:1098	arg2	their glycosylation sites			their glycosylation sites						sites	Our results suggest that glycoforms displaying highly correlated motion in their glycosylation sites tend to bind cellulose with high affinity and lignin with low affinity.
32820296	6	5	part_of	SA	1195:1196	arg1	the composition	SA, VCL		the composition		OGER	Site	SA, VCL	P18206	position	The SHG formation was successfully balanced by varying the composition of SA, VCL, TA and cross-linkers.
32820296	6	78	part_of	VCL	1199:1201	arg1	the composition	SA, VCL		the composition		OGER	Site	SA, VCL	P18206	position	The SHG formation was successfully balanced by varying the composition of SA, VCL, TA and cross-linkers.
32127446	8	87	gly	glycoproteins	1725:1737	arg1	mucin glycoproteins	mucin glycoproteins				Fterm		glycoproteins			Pathogens such as P. aeruginosa that lack sialidases may rely on enzymes from other bacteria to utilize mucin-derived monosaccharides.IMPORTANCE One of the first lines of defense present at mucosal epithelial tissues is mucus, which is a highly viscous material formed by mucin glycoproteins.
31613202	3	16	part_of	strain	307:312	arg1	The taxonomic position	strain		The taxonomic position		Fterm	Site	strain		position	The taxonomic position of the strain was investigated by using a polyphasic approach.
33125241	8	46	gly	glycopeptides	1499:1511	arg2	glycopeptides			glycopeptides						glycopeptides	Excitingly, the ability to enrich glycopeptides using FAIMS appears generally applicable, with the N-linked glycopeptides of Campylobacter fetus subsp.
33125241	8	49	gly	glycopeptides	1573:1585	arg2	the N-linked glycopeptides			the N-linked glycopeptides						glycopeptides	Excitingly, the ability to enrich glycopeptides using FAIMS appears generally applicable, with the N-linked glycopeptides of Campylobacter fetus subsp.
32298636	1	31	gly	sialylated	230:239	arg1	sialylated glycans				sialylated glycans						Host lipid composition influences many stages of the influenza A virus (IAV) entry process, including initial binding of IAV to sialylated glycans, fusion between the viral envelope and the host membrane, and the formation of a fusion pore through which the viral genome is transferred into a target cell.
35116628	1	0	gly	glycoprotein	149:160	arg1	a membrane glycoprotein	a membrane glycoprotein				Fterm		glycoprotein			BACKGROUND Neuregulin 1 (NRG1) is a membrane glycoprotein mediating cell-to-cell signaling and has a crucial role in the growth and development of various organ systems.
32315798	6	15	part_of	compositions	837:848	arg1	the proteins	proteins		compositions		Fterm	Site	proteins		positions	The three-dimensional excitation and emission matrix fluorescence spectra analyses indicated that tyrosine- and tryptophan-like substances were the main functional compositions in the proteins of EPS.
33295623	2	59	gly	glycoprotein	432:443	arg1	the glycoprotein	the glycoprotein				Fterm		glycoprotein			Both such modifications can coexist in this domain of the glycoprotein.
32816657	9	55	part_of	had	1219:1221	arg1	The strain AND iso-C15 	The strain		iso-C15 		Fterm	SpecificSite	strain		C15 	The strain had iso-C15 : 0, anteiso-C15 : 0, iso-C14 : 0, C16 : 0 and iso-C16 : 0 as major fatty acids.
35141446	1	86	gly	glycoprotein	284:295	arg1	a specific glycoprotein	a specific glycoprotein				Fterm		glycoprotein			Equine chorionic gonadotropin (eCG), produced by the endometrial cups of the placenta after the first trimester, is a specific glycoprotein that displays dual luteinizing hormone (LH)-like and follicle-stimulating hormone (FSH)-like effects in non-equid species.
31931062	8	5	gly	fucosylated	1269:1279	arg1	highly fucosylated N-glycans				highly fucosylated N-glycans						Finally, rSHL1 and rHEL1 were comparable in their ability to detect highly fucosylated N-glycans within glycoproteins on the surface of SW1116 human colorectal carcinoma cells.
31931062	8	69	gly	glycoproteins	1298:1310	arg1	glycoproteins				glycoproteins						Finally, rSHL1 and rHEL1 were comparable in their ability to detect highly fucosylated N-glycans within glycoproteins on the surface of SW1116 human colorectal carcinoma cells.
34712749	7	19	part_of	proteins	1436:1443	arg1	N-glycosylation sites	proteins		N-glycosylation sites		Fterm	Site	proteins		sites	This allowed us to map the fraction of glycoproteins with non-matured N-glycans from A375 melanoma cells and find or validate N-glycosylation sites of proteins from the secretory pathway.
32376684	4	0	part_of	sequences	715:723	arg1	EOGT	EOGT		sequences		PUBTATOR	Site	EOGT	285203	sequences	Three predicted N-glycosylation consensus sequences on EOGT are highly conserved among mammalian species.
34015094	4	54	part_of	has	819:821	arg1	a 20 kDa Golgi membrane protein AND no predicted enzymatic domains	a 20 kDa Golgi membrane protein		no predicted enzymatic domains		Fterm	Site	protein		domains	Genomic sequencing was used to identify a mutant allele of ELMO1 which encodes a 20 kDa Golgi membrane protein that has no predicted enzymatic domains.
34712749	6	66	gly	glycopeptides	1200:1212	arg2	Concanavalin A enriched glycopeptides			Concanavalin A enriched glycopeptides						glycopeptides	The first one refers to the deglycoproteomics dataset, which covers nanoLC-MS/MS analysis of Concanavalin A enriched glycopeptides released by endoglycosidase digestion from A375 melanoma cell lysates.
33363672	6	84	gly	glycopeptide	1017:1028	arg2	Initial glycopeptide identification			Initial glycopeptide identification						glycopeptide	Initial glycopeptide identification based on MS/MS data was aided by the Byonic software.
34555401	0	81	part_of	PVA	80:82	arg1	hybrid PVA nanocomposites	PVA		hybrid PVA nanocomposites		OGER	Site	PVA	P32926	nanocomposites	Cellulose nanocrystals‑silver nanoparticles-reduced graphene oxide based hybrid PVA nanocomposites and its antimicrobial properties.
33127381	7	27	part_of	contains	930:937	arg1	CRS1 AND unique Thr residues	CRS1		unique Thr residues		PUBTATOR	AminoAcid	CRS1	7291	Thr residues	Unlike other antimicrobial α-defensin proteins, CRS1 contains unique Thr residues, which are modified with O-glycans, with 3HexNAc2Hex1Fuc1NeuAc being the main glycoform.
34458800	6	38	part_of	HA-binding	1252:1261	arg1	known HA-binding peptides	HA-binding		known HA-binding peptides		Cterm	Site	HA-binding		peptides	Using surface plasmon resonance, the binding of the glycopolymers to known HA-binding peptides and proteins (CD44, hyaluronidase) was assessed and compared to carbohydrate-binding proteins (lectins).
34287120	10	36	part_of	DR6-1T	1085:1090	arg1	genomic sequences	DR6		genomic sequences		OGER	Site	DR6	O75509	sequences	The ANIb and dDDH values between genomic sequences of strain DR6-1T and Amycolatopsis echigonensis JCM21831T, Amycolatopsis rubida JCM 10871T and Amycolatopsis nivea KCTC 39515T were 90.55, 92.25, 92.60%, and 47.20, 52.10 and 52.50%, respectively.
31242281	1	49	gly	glycoproteins	155:167	arg1	hydroxyproline-rich glycoproteins	hydroxyproline-rich glycoproteins				Fterm		glycoproteins			BACKGROUND AND AIMS Extensins are hydroxyproline-rich glycoproteins thought to strengthen the plant cell wall, one of the first barriers against pathogens, through intra- and intermolecular cross-links.
31242281	2	14	gly	glycoprotein	400:411	arg1	the glycoprotein	the glycoprotein				Fterm		glycoprotein			The glycan moiety of extensins is believed to confer the correct structural conformation to the glycoprotein, leading to self-assembly within the cell wall that helps limit microbial adherence and invasion.
33404253	4	7	gly	N-glycosylation	844:858	arg2	N-glycosylation sites			N-glycosylation sites						sites	Electrophoresis showed that B. alcatraz venom differs from B. jararaca and B. insularis; however, N-glycan removal revealed similarities between them, indicating that the occupation of N-glycosylation sites contributes to interspecies variability in the B. jararaca complex.
31924694	5	28	gly	N-glycosylation	1216:1230	arg2	over 1300 N-glycosylation sites			over 1300 N-glycosylation sites						sites	N-glycopeptide enrichment via lectin capturing using the high mannose/paucimannose-binding lectin Concanavalin A, or the Rhizoctonia solani agglutinin which interacts with complex N-glycans, resulted in the identification of over 1300 N-glycosylation sites derived from over 600 glycoproteins.
31924694	5	33	gly	N-glycopeptide	981:994	arg2	N-glycopeptide			N-glycopeptide						N-glycopeptide	N-glycopeptide enrichment via lectin capturing using the high mannose/paucimannose-binding lectin Concanavalin A, or the Rhizoctonia solani agglutinin which interacts with complex N-glycans, resulted in the identification of over 1300 N-glycosylation sites derived from over 600 glycoproteins.
31924694	5	37	gly	glycoproteins	1260:1272	arg1	over 600 glycoproteins	over 600 glycoproteins				Fterm		glycoproteins			N-glycopeptide enrichment via lectin capturing using the high mannose/paucimannose-binding lectin Concanavalin A, or the Rhizoctonia solani agglutinin which interacts with complex N-glycans, resulted in the identification of over 1300 N-glycosylation sites derived from over 600 glycoproteins.
35011046	5	73	part_of	composition	953:963	arg1	MLN	MLN		composition		OGER	Site	MLN	P0DMT0	position,	Behaviour, caecal content microbiota composition, short-chain fatty acid levels, brain monoamine levels, enterochromaffin cells and immune parameters in the mesenteric lymph nodes (MLN) and spleen were assessed.
32359163	8	35	gly	glycosylation	1589:1601	arg2	glycosylation motifs			glycosylation motifs						motifs	We reconstruct the overall evolutionary history of the FLAs, annotated with the changing domain architectures, glycosylation motifs, number and length of AG regions, and disordered region sequence features.
35573890	9	52	gly	glycopeptides	1335:1347	arg2	enriched glycopeptides			enriched glycopeptides						glycopeptides	Finally, an in-depth analysis of glycan variants of CIs was performed through the detection of enriched glycopeptides.
34805251	6	58	part_of	16S	1056:1058	arg1	16S rDNA sequences	16S		16S rDNA sequences		PUBTATOR	Site	16S	27471	sequences	Predictive functional analysis, based on 16S rDNA sequences, revealed overrepresentation of glycan biosynthesis and metabolism, energy metabolism, and fatty acid biosynthesis pathways in mice that received YBG for 30 days.
34416386	2	17	part_of	ECM	407:409	arg1	composition	ECM		composition		OGER	Site	ECM	Q13201	position	However, only a few research organisms are available for the systematic dissection of the composition and functions of the ECM, particularly during regeneration.
34249773	4	40	part_of	gut	534:536	arg1	The gut microbiome composition	gut		The gut microbiome composition		PUBTATOR	Site	gut	110006	position	The gut microbiome composition was determined by 16S rRNA gene sequencing fecal samples obtained at week 16 post-AOM administration.
34632015	0	1	part_of	proteins	61:68	arg1	biochemical composition	proteins		biochemical composition		Fterm	Site	proteins		position	Data on agronomic traits, biochemical composition of lipids, proteins and polysaccharides and rheological measurement in a brown mustard seed collection.
34632015	0	9	part_of	composition	38:48	arg1	agronomic traits	traits		composition		OGER	Site	traits	Q96CJ1	position	Data on agronomic traits, biochemical composition of lipids, proteins and polysaccharides and rheological measurement in a brown mustard seed collection.
33539901	2	11	gly	site	579:582	arg1	a C-terminal peptide			a C-terminal peptide						peptide	In this study, recombinant single-chain Japanese eel Gths (rGth: rFsh and rLh), and recombinant chimeric Gths (rGth-hCTPs: rFsh-hCTP and rLh-hCTP; rGth-eCTPs: rFsh-eCTP and rLh-eCTP) with an extra O-glycosylation site (either a C-terminal peptide of human (hCTP) or equine (eCTP) chorionic gonadotropin), which are known to prolong the half-life of glycoprotein were produced in HEK293 cells and highly purified.
33539901	2	62	gly	O-glycosylation	563:577	arg2	an extra O-glycosylation site			an extra O-glycosylation site						site	In this study, recombinant single-chain Japanese eel Gths (rGth: rFsh and rLh), and recombinant chimeric Gths (rGth-hCTPs: rFsh-hCTP and rLh-hCTP; rGth-eCTPs: rFsh-eCTP and rLh-eCTP) with an extra O-glycosylation site (either a C-terminal peptide of human (hCTP) or equine (eCTP) chorionic gonadotropin), which are known to prolong the half-life of glycoprotein were produced in HEK293 cells and highly purified.
33539901	2	96	gly	glycoprotein	715:726	arg1	glycoprotein	glycoprotein				Fterm		glycoprotein			In this study, recombinant single-chain Japanese eel Gths (rGth: rFsh and rLh), and recombinant chimeric Gths (rGth-hCTPs: rFsh-hCTP and rLh-hCTP; rGth-eCTPs: rFsh-eCTP and rLh-eCTP) with an extra O-glycosylation site (either a C-terminal peptide of human (hCTP) or equine (eCTP) chorionic gonadotropin), which are known to prolong the half-life of glycoprotein were produced in HEK293 cells and highly purified.
32800353	12	5	part_of	NACP	1826:1829	arg1	30% NACP composite	30% NACP		30% NACP composite		OGER	Site	30% NACP	P37840	composite	CONCLUSIONS The novel 3% DMAHDM + 30% NACP composite had strong antibacterial effects.
32800353	12	98	part_of	%	1824:1824	arg1	30% NACP composite	30% NACP		30% NACP composite		OGER	Site	30% NACP	P37840	composite	CONCLUSIONS The novel 3% DMAHDM + 30% NACP composite had strong antibacterial effects.
31746729	8	48	gly	C16 	1222:1225	arg1	iso-C16 			iso-C16 						C16 	The major fatty acids (>5 %) of strain SYSU K30003T were anteiso-C15:0, C16 : 0, anteiso-C17 : 0 and iso-C16 : 0, while those of strain SYSU K30004T were anteiso-C15:0, C16:0, anteiso-C17 : 0, iso-C15 : 0, iso-C16:0 and iso-C17 : 0.
33691970	5	43	part_of	protein	657:663	arg1	the mature protein sequence	protein		the mature protein sequence		Fterm	Site	protein		sequence	Four of them showed functional proteins (Wx-A1p, Wx-A1q, Wx-A1r and Wx-A1s), although some amino acid changes were found in the mature protein sequence.
32603728	1	16	part_of	CS-AA/MWCNTs	315:326	arg1	a novel chitosan-acrylic acid/multiwalled carbon nanotubes (CS-AA/MWCNTs) composite	CS		a novel chitosan-acrylic acid/multiwalled carbon nanotubes (CS-AA/MWCNTs) composite		PUBTATOR	Site	CS	1431	composite	A simple and efficient separation method of carrier-free 47Sc from neutron irradiated titanium target using a novel chitosan-acrylic acid/multiwalled carbon nanotubes (CS-AA/MWCNTs) composite was established.
33821278	7	60	gly	modified	1230:1237	arg3	Asn 234 AND processed glycans			Asn 234	processed glycans					Asn 234	Even Asn 234, a significant percentage of which is decorated by high-mannose glycans on soluble and virion S trimers, is predominantly modified in the Golgi by processed glycans.
34752210	5	56	part_of	CCB-QB4T	517:524	arg1	the 16S rRNA gene sequence	CCB-QB4T		the 16S rRNA gene sequence		Cterm	Site	CCB-QB4T		sequence	Phylogenetic analysis based on the 16S rRNA gene sequence of strain CCB-QB4T showed 94.07, 92.69, 91.52 and 90.90 % sequence similarity to Algibacillus agarilyticus RQJ05T, Catenovulum maritimum Q1T, Catenovulum agarivorans YM01T and Catenovulum sediminis D2T, respectively.
32127446	2	101	gly	glycosylated	319:330	arg1	heavily glycosylated proteins	heavily glycosylated proteins				Fterm		proteins			The major structural components of mucus are heavily glycosylated proteins called mucins.
33295623	1	60	gly	threonine	248:256	arg1	α-O-GalNAc			threonine residues	α-O-GalNAc					threonine residues	We have carried out a comparative study of the conformational impact of modifications to threonine residues of either α-O-Man or α-O-GalNAc in the context of a sequence from the mucin-like region of α-dystroglycan.
33295623	1	60	gly	threonine	248:256	arg1	α-O-Man			threonine residues	α-O-Man					threonine residues	We have carried out a comparative study of the conformational impact of modifications to threonine residues of either α-O-Man or α-O-GalNAc in the context of a sequence from the mucin-like region of α-dystroglycan.
33125241	5	61	gly	glycopeptides	873:885	arg2	short aliphatic O-linked glycopeptides			short aliphatic O-linked glycopeptides						glycopeptides	Using three Burkholderia species (Burkholderia cenocepacia, Burkholderia Dolosa, and Burkholderia ubonensis), we demonstrate that short aliphatic O-linked glycopeptides are typically absent from HILIC enrichments, yet are readily identified in whole proteome samples.
32930817	6	27	part_of	gelatin	977:983	arg1	The composition	gelatin		The composition		Fterm	Site	gelatin		position	The composition of 20% gelatin and 7.5% CMC showed to support the tissue best while sectioning.
31924694	9	75	gly	N-glycosylation	1857:1871	arg1	proteins	proteins				Fterm		proteins			Both lectin blotting experiments as well as transcript expression analyses with complete insects and insect tissues confirmed the observed differences in N-glycosylation of proteins between sexes.
32359993	1	12	gly	glycoprotein	132:143	arg1	a cell-surface glycoprotein	a cell-surface glycoprotein				Fterm		glycoprotein			The CD44 gene encodes a cell-surface glycoprotein that participates in a variety of biological processes such as cell interactions, adhesion, hematopoiesis, and tumor metastasis.
32250240	3	11	part_of	strain	209:214	arg1	The taxonomic position	strain		The taxonomic position		Fterm	Site	strain		position	The taxonomic position of the strain was investigated by using a polyphasic approach.
33691970	3	6	part_of	protein	341:347	arg1	The waxy protein composition	protein		The waxy protein composition		Fterm	Site	protein		position	The waxy protein composition of 45 Spanish common wheat landraces from Andalusia (southern Spain) was evaluated.
32310329	8	52	gly	glycosylation	1257:1269	arg1	proteins	proteins				Fterm		proteins			In addition, the established methodology can be readily applied to analyze glycosylation patterns of proteins with more than 2000 amino acids.
33301522	2	45	gly	N-glycopeptides	437:451	arg2	intact N-glycopeptides			intact N-glycopeptides						N-glycopeptides	The sample pre-processing method used for the analysis of intact N-glycopeptides usually depends on the enrichment of low abundance N-glycopeptides from a tryptic peptide mixture using hydrophilic substances before LC-MS/MS detection.
33301522	2	62	gly	N-glycopeptides	504:518	arg2	low abundance N-glycopeptides			low abundance N-glycopeptides						N-glycopeptides	The sample pre-processing method used for the analysis of intact N-glycopeptides usually depends on the enrichment of low abundance N-glycopeptides from a tryptic peptide mixture using hydrophilic substances before LC-MS/MS detection.
33090600	2	1	gly	N-glycosylation	311:325	arg1	Asn31			Asn31						Asn31	Post-translational N-glycosylation of Asn31 of MOG seems to play a key role in modulating the immune response towards myelin.
32846509	0	7	part_of	Impact	0:5	arg1	compatible solute composition	Impact		compatible solute composition		OGER	Site	Impact	Q9P2X3	position	Impact of maturation and growth temperature on cell-size distribution, heat-resistance, compatible solute composition and transcription profiles of Penicillium roqueforti conidia.
33498853	4	47	part_of	gut	465:467	arg1	gut bacterial composition	gut		gut bacterial composition		PUBTATOR	Site	gut	110006	position	We particularly explored its role in metabolic parameters, gut bacterial composition and diversity using 16S rRNA sequencing, systematically compared changes under each phylum and predicted the functional potential of the altered bacterial community using PICRUSt2.
32985073	1	41	part_of	2:1	303:305	arg1	2:1 (w/w) chitosan/collagen composite	2:1		2:1 (w/w) chitosan/collagen composite		OGER	Site	2:1	P35326	composite	In the present study, an inorganic matrix of beta-tricalcium phosphate (bTCP) nanoparticles and quercetin was incorporated into an organic matrix of 2:1 (w/w) chitosan/collagen composite to fabricate thermosensitive bTCP-chitosan/collagen-quercetin hydrogels.
32823755	5	0	gly	residues	965:972	arg1	fructooligosaccharides			residues	fructooligosaccharides					residues	We investigated the effect of milk supplementation with a combination of two well-known prebiotics, fructooligosaccharides (FOS) from sugar beet and garlic residues (all together named as "additive"), exerted on preweaned lamb growth and the composition of their fecal microbiota, by using 16S rRNA gene amplicon high-throughput sequencing.
33726981	1	3	gly	glycoproteins	166:178	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			Changes in glycan levels could directly affect the biochemical properties of glycoproteins and thus influence their physiological functions.
34482828	16	70	gly	glycosylation	2330:2342	arg2	the N-linked glycosylation site			the N-linked glycosylation site						site	The findings of this study suggest that the LH-like and FSH-like activities of eCG are regulated by the N-linked glycosylation site at Asn56 of the eCG α-subunit and/or by the O-linked glycosylation sites of the eCG β-subunit.
34482828	16	87	gly	glycosylation	2402:2414	arg2	the O-linked glycosylation sites	β-subunit		sites		Fterm		β-subunit		sites	The findings of this study suggest that the LH-like and FSH-like activities of eCG are regulated by the N-linked glycosylation site at Asn56 of the eCG α-subunit and/or by the O-linked glycosylation sites of the eCG β-subunit.
33572881	2	10	part_of	HMOs	281:284	arg1	the composition	HMOs		the composition		OGER	Site	HMOs	P00540	position	We aimed to quantify the composition of HMOs of women with normal weight (18.5-24.9 kg/m2), overweight (25.0-29.9 kg/m2), or obesity (30.0-60.0 kg/m2) and determine the effect of HMO intake on infant growth.
33038510	2	9	gly	glycoproteins	493:505	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			Since PDA shows an altered glycan expression, here we have focused on finding novel potential biomarkers, namely glycoproteins that express the tumor associated carbohydrate structure sialyl-Lewis x (sLex), which is described in PDA.
32531254	5	22	gly	glycosylation	1179:1191	arg2	the O-linked glycosylation site			the O-linked glycosylation site						site	This implicated glycosylation as a factor in antibody recognition and synthetic peptides spanning the two N-linked and one O-linked glycosylation regions showed that SHBG recognition by monoclonal antibody 7H9 could be disrupted by a peptide spanning the O-linked glycosylation site.
32310329	6	60	gly	N-glycopeptides	953:967	arg2	57 unique N-glycopeptides			57 unique N-glycopeptides						N-glycopeptides	RESULTS/CONCLUSION A total of 57 unique N-glycopeptides and 51 O-glycopeptides were identified, which were categorized into 40 N-glycan and 17 O-glycan compositions.
32310329	6	61	gly	O-glycopeptides	976:990	arg2	51 O-glycopeptides			51 O-glycopeptides						O-glycopeptides	RESULTS/CONCLUSION A total of 57 unique N-glycopeptides and 51 O-glycopeptides were identified, which were categorized into 40 N-glycan and 17 O-glycan compositions.
32752259	5	1	gly	glycoproteins	833:845	arg1	most CRC glycoproteins	most CRC glycoproteins				Fterm		glycoproteins			However, we failed to detect the presence of O-linked Tn and STn glycans on most CRC glycoproteins recognized by MGL.
32752259	5	60	gly	presence	781:788	arg2	most CRC glycoproteins AND STn glycans	most CRC glycoproteins			STn glycans	Fterm		glycoproteins			However, we failed to detect the presence of O-linked Tn and STn glycans on most CRC glycoproteins recognized by MGL.
33580179	5	8	part_of	proteins	760:767	arg1	The composition	HS-binding proteins		The composition		Cterm	Site	HS-binding proteins	1471	position	The composition of the HS-binding site by two highly dynamic halves is unique in known HS-binding proteins.
33580179	5	11	part_of	HS-binding	685:694	arg1	the HS-binding site	HS-binding		the HS-binding site		Cterm	Site	HS-binding	1471	site	The composition of the HS-binding site by two highly dynamic halves is unique in known HS-binding proteins.
33627655	8	11	gly	sialylated	1251:1260	arg1	sialylated glycans				sialylated glycans						This work highlights a critical role for sialylated glycans in controlling immune suppression and provides new potential targets for cancer immunotherapy in PDAC.
34163440	6	51	gly	N-glycoproteins	1037:1051	arg1	differentially expressed N-glycoproteins	differentially expressed N-glycoproteins				Fterm		N-glycoproteins			For the N-glycoproteome, the numbers of differentially expressed N-glycoproteins were 160, 176, and 128 in T50/T30, T55/T30, and T55/T50, respectively.
33068039	8	28	part_of	MGP1	1497:1500	arg1	an MGP1 sequence	MGP1		an MGP1 sequence		Cterm	Site	MGP1		sequence	We show that the optimized MGP1 variants can bind more strongly to TfR than the native MGP1, and there is an MGP1 sequence that retains binding in the absence of glycosylation, but with the addition of further amino acid substitutions.
32376684	5	83	gly	modified	855:862	arg3	Asn-493 AND N-glycans			Asn-493	N-glycans					Asn-493	Within these sites, we found that Asn-263 and Asn-354, but not Asn-493, are modified with N-glycans.
32376684	5	83	gly	modified	855:862	arg3	Asn-354 AND N-glycans			Asn-263 and Asn-354	N-glycans					Asn-263 and Asn-354	Within these sites, we found that Asn-263 and Asn-354, but not Asn-493, are modified with N-glycans.
32840368	2	10	part_of	sn-1/sn-2	699:707	arg1	sn-1/sn-2 position	sn-1		sn-1/sn-2 position		OGER	Site	sn-1	Q99624	position	From an analytical point of view, the critical aspect of these bioactive lipids lies in the determination of fatty acyl chains located in sn-1/sn-2 position on the glycerol backbone (O-linked), along with the amide-bound (N-linked) fatty acyl chain.
33363672	7	43	gly	glycopeptides	1285:1297	arg2	confidently annotated glycopeptides			confidently annotated glycopeptides						glycopeptides	Additional MS1-based glycopeptide identification relying on accurate mass and retention time differences using GlycopeptideGraphMS considerably expanded the set of confidently annotated glycopeptides.
33363672	7	90	gly	glycopeptide	1120:1131	arg2	Additional MS1-based glycopeptide identification relying			Additional MS1-based glycopeptide identification relying						glycopeptide	Additional MS1-based glycopeptide identification relying on accurate mass and retention time differences using GlycopeptideGraphMS considerably expanded the set of confidently annotated glycopeptides.