doc_id	sent_index	relation_id	relation	trigger	trigger_offset	arg_num	arg_base_np	arg_protein	arg_domain	arg_site	arg_sugar	PSource	SiteSource	NProtein	NID	SiteName	sent_text
33255021	2	41	part_of	BMP-2	357:361	arg1	BMP-2 peptide	BMP-2		BMP-2 peptide		PUBTATOR	Site	BMP-2	650	peptide	The bioactivation of the scaffolds was accomplished by using organic (BMP-2 peptide) and inorganic (hydroxyapatite nanoparticles) cues.
33819626	4	3	gly	uptake	885:890	arg1	K. marxianus CCT 7735	CCT			uptake	OGER		CCT			Herein, we aimed to evaluate the effect of 2-PE on cell growth, cell viability, membrane permeability, glucose uptake, metabolism, and morphology in K. marxianus CCT 7735, as well as its adaptive responses.
33800794	0	32	part_of	-Activated	20:29	arg1	Poly(β-cyclodextrin)-Activated Carbon Gel Composites	-Activated		Poly(β-cyclodextrin)-Activated Carbon Gel Composites		Cterm	Site	-Activated		Composites	Poly(β-cyclodextrin)-Activated Carbon Gel Composites for Removal of Pesticides from Water.
34171252	1	56	part_of	protein	242:248	arg1	Biofilm composition	protein		Biofilm composition		Fterm	Site	protein		position	Biofilm composition from fish myofibrillar protein (FMP) and chitosan solution (CS) incorporated with rosemary extract (RE) was developed and applied to monitor the freshness of fish fillets.
33635635	4	51	part_of	fibronectin-derived	723:741	arg1	fibronectin-derived integrin-binding peptide	fibronectin		fibronectin-derived integrin-binding peptide		PUBTATOR	Site	fibronectin	2335	peptide	To establish the engineered model, we cultured VFECs on a hyaluronic acid-derived synthetic basement membrane displaying fibronectin-derived integrin-binding peptide (RGDSP) and/or laminin 111-derived syndecan-binding peptide AG73 (RKRLQVQLSIRT).
33635635	4	120	part_of	laminin	783:789	arg1	laminin 111-derived syndecan-binding peptide AG73	laminin		laminin 111-derived syndecan-binding peptide AG73		OGER	Site	laminin		peptide	To establish the engineered model, we cultured VFECs on a hyaluronic acid-derived synthetic basement membrane displaying fibronectin-derived integrin-binding peptide (RGDSP) and/or laminin 111-derived syndecan-binding peptide AG73 (RKRLQVQLSIRT).
33793546	3	40	gly	glycosylated	427:438	arg1	four full-length, fully glycosylated and palmitoylated S proteins	four full-length, fully glycosylated and palmitoylated S proteins				PUBTATOR		S proteins	43740568		To identify possible antibody binding sites, we performed multi-microsecond molecular dynamics simulations of a 4.1 million atom system containing a patch of viral membrane with four full-length, fully glycosylated and palmitoylated S proteins.
32475561	2	42	part_of	protein	403:409	arg1	a novel core-shell nanocomposite	protein		a novel core-shell nanocomposite		Fterm	Site	protein		nanocomposite	In this work, we developed a novel core-shell nanocomposite from carboxymethylated corn fiber gum (CMCFG) and high nutritious pea protein (PP) for curcumin (Cur) delivery.
33361843	8	130	part_of	PPS	1403:1405	arg1	PPS andtheir compositions	PPS		PPS andtheir compositions		OGER	Site	PPS	Q9BT40	positions	At the first stage of the study, the effect of PPS andtheir compositions with polysaccharides on reparative regeneration was studied against the background of its suppression in intact and irradiated animals.
32474786	1	49	part_of	β-CD/MGO	176:183	arg1	the β-cyclodextrin modified magnetic graphene oxide (β-CD/MGO) composite	-CD/MGO		the β-cyclodextrin modified magnetic graphene oxide (β-CD/MGO) composite		PUBTATOR	Site	-CD/MGO	65057	composite	In this work, the β-cyclodextrin modified magnetic graphene oxide (β-CD/MGO) composite was fabricated by the in situ co-precipitation method and characterized by Fourier transform-infrared spectroscopy (FT-IR), scanning electron microscopy (SEM), transmission electron microscopy (TEM), X-ray photoelectron spectroscopy (XPS), vibrating sample magnetometer (VSM), and particle size analysis.
32474786	1	60	part_of	β-cyclodextrin	127:140	arg1	the β-cyclodextrin modified magnetic graphene oxide (β-CD/MGO) composite	β-cyclodextrin		the β-cyclodextrin modified magnetic graphene oxide (β-CD/MGO) composite		Fterm	Site	β-cyclodextrin		composite	In this work, the β-cyclodextrin modified magnetic graphene oxide (β-CD/MGO) composite was fabricated by the in situ co-precipitation method and characterized by Fourier transform-infrared spectroscopy (FT-IR), scanning electron microscopy (SEM), transmission electron microscopy (TEM), X-ray photoelectron spectroscopy (XPS), vibrating sample magnetometer (VSM), and particle size analysis.
32612952	9	32	gly	N-GlcNAc	1441:1448	arg1	EGFR	EGFR			N-GlcNAc	PUBTATOR		EGFR	1956		We overexpressed MGAT3 in breast cancer MDA-MB-231 cells, and overexpression of MGAT3 significantly enhanced the bisecting N-GlcNAc on EGFR and suppressed the EGFR/Erk signaling, which further resulted in the reduction of migratory ability, cell proliferation, and clonal formation.
33815445	3	73	gly	glycoproteins	569:581	arg1	helminth glycoproteins	helminth glycoproteins				Fterm		glycoproteins			Recently, pioneering work has shown that helminth glycoproteins can be produced transiently in Nicotiana benthamiana plants while simultaneously mimicking their native helminth N-glycan composition by co-expression of desired glycosyltransferases.
32980603	1	58	gly	used	191:194	arg2	Fe(III)-loaded chitosan (CTS-Fe) composite			Fe(III)-loaded chitosan (CTS-Fe) composite						composite	Fe(III)-loaded chitosan (CTS-Fe) composite was used for the first time to remove and recover phosphorus (P) from waste activated sludge (WAS) via anaerobic digestion (AD).
32348759	3	33	part_of	PG	365:366	arg1	PG fragments	PG		PG fragments		Cterm	Site	PG		fragments	Here, we show that Vibrio cholerae recycles PG fragments modified with non-canonical d-amino acids (NCDAA), which lead to the accumulation of cytosolic PG tetrapeptides.
33962112	5	55	part_of	CDs-HQDs/HPCCS/UN	1033:1049	arg1	The CDs-HQDs/HPCCS/UN nanocomposites	CDs		The CDs-HQDs/HPCCS/UN nanocomposites		OGER	Site	CDs	Q92903	nanocomposites	The CDs-HQDs/HPCCS/UN nanocomposites gained the highest photocatalytic activity for degrading 4-chlorophenol (4-CPh) as a pollutant (>98% during 70 min under sunlight irradiation).
34412473	9	31	part_of	TOCN-CLP	1889:1896	arg1	TOCN-CLP biopolymeric composites	CLP		TOCN-CLP biopolymeric composites		PUBTATOR	Site	CLP	810	composites	Overall, these results highlight the potential of TOCN-CLP biopolymeric composites as a basis for sustainable corrosion protection coatings.
33789194	3	47	gly	used	542:545	arg2	The as-prepared CTSM@AMPA-Ti4+ composites			The as-prepared CTSM@AMPA-Ti4+ composites						composites	The as-prepared CTSM@AMPA-Ti4+ composites with stable structure, low steric hindrance, and high Ti4+ loading amount were used as a promising adsorbent for enrichment of phosphopeptides.
32941910	0	5	part_of	pectin	75:80	arg1	chemical composition	pectin		chemical composition		Fterm	Site	pectin		position,	Studies on chemical composition, rheological and antioxidant properties of pectin isolated from Riang (Parkia timoriana (DC.)
33908161	2	42	part_of	HA	370:371	arg1	various molecular weight fragments	HA		various molecular weight fragments		Cterm	Site	HA		fragments	The impact of various molecular weight fragments of HA on normal human epidermal keratinocytes (NHEK) with regard to expression of important cellular proteins has not been deeply explored.
33848549	0	29	part_of	MOF	13:15	arg1	Composite	MOF		Composite		OGER	Site	MOF	Q9H7Z6	Composite	Composite of MOF and chitin as an efficient catalyst for photodegradation of organic dyes.
33848549	0	37	part_of	chitin	21:26	arg1	Composite	chitin		Composite		Fterm	Site	chitin		Composite	Composite of MOF and chitin as an efficient catalyst for photodegradation of organic dyes.
32657258	10	45	part_of	ORC/PCL	1628:1634	arg1	DISCUSSION Bilayer ORC/PCL composites	ORC		DISCUSSION Bilayer ORC/PCL composites		OGER	Site	ORC		composites	DISCUSSION Bilayer ORC/PCL composites were successfully employed for dural closure in the rabbit model.
32817943	7	6	gly	positions	1036:1044	arg1	glycan structures			positions	glycan structures					positions	In addition to previously proposed and observed glycosylation sites, our map shows density at other amino acid positions as well as differences in glycan structures.
32817943	7	29	gly	glycosylation	973:985	arg2	observed glycosylation sites			observed glycosylation sites						sites	In addition to previously proposed and observed glycosylation sites, our map shows density at other amino acid positions as well as differences in glycan structures.
34872407	11	20	gly	glycoproteins	1238:1250	arg1	HM glycoproteins	HM glycoproteins				Fterm		glycoproteins			Another component that shapes the gut microbiota is HM glycoproteins.
32092426	2	34	part_of	ST-Zn-Se-NPs-AC	415:429	arg1	The ST-Zn-Se-NPs-AC composite	NPs		The ST-Zn-Se-NPs-AC composite		OGER	Site	NPs	P0C0P6	composite	The ST-Zn-Se-NPs-AC composite was characterized by FE-SEM, UV-Vis, EDS, and XRD techniques.
32217362	6	27	gly	O-glycopeptides	1035:1049	arg2	O-glycopeptides			O-glycopeptides						O-glycopeptides	We were able to isolate several kinds of O-glycopeptides from lactophorin and κ-casein: six peptide sequences and five kinds of O-glycans.
33940669	0	57	part_of	dentin	105:110	arg1	the chemical composition	dentin		the chemical composition		Fterm	Site	dentin		position	Effect of phosphorylated chitosan and carbodiimide biomodification on the chemical composition of eroded dentin.
34486109	2	50	gly	alpha	447:451	arg1	lipopolysaccharide-induced levels	tumor necrosis factor alpha			lipopolysaccharide-induced levels	PUBTATOR		tumor necrosis factor alpha	21926		Electrical stimulation of the ASN resulted in increased levels of splenic acetylcholine, decreased lipopolysaccharide-induced levels of systemic tumor necrosis factor alpha and mitigated clinical symptoms in a mouse model of rheumatoid arthritis.
33827016	0	28	part_of	carbon/MCM-41/alginate	37:58	arg1	carbon/MCM-41/alginate hydrogel composite	MCM		carbon/MCM-41/alginate hydrogel composite		OGER	Site	MCM	P22033	composite	Cross-linked FeCl3-activated seaweed carbon/MCM-41/alginate hydrogel composite for effective biosorption of bisphenol A plasticizer and basic dye from aqueous solution.
33342323	3	6	gly	glycosylated	639:650	arg1	GCS	GCS				OGER		GCS	Q16739		In this work, we have approached novel design and development of glycosylated chitosan (GCS) encapsulated mesoporous silica nanoparticles (GCS-MONPs)-based nano-scaffold for sustainable distributions and controlled/supported arrival of stacked RV for targeting sites, which can be activated by either outer ultrasound activating to discharge the payload, foundation on-request and dependable analgesia.
33815445	6	5	gly	glycoprotein	1340:1351	arg1	the model helminth glycoprotein kappa-5	the model helminth glycoprotein kappa-5				Fterm		glycoprotein			We identified HEXO2 and HEXO3 as enzymes responsible for the cleavage of antennary GalNAc residues of N-glycans on the model helminth glycoprotein kappa-5.
33376510	1	26	gly	N-glycosylated	203:216	arg1	Organic cation transporter	Organic cation transporter				PUBTATOR		Organic cation transporter member 2	6582		Organic cation transporter member 2 (OCT2) is an N-glycosylated transporter that has been shown to be closely associated with the transport of antitumor drugs.
32217362	3	34	part_of	protein	388:394	arg1	The protein composition	protein		The protein composition		Fterm	Site	protein		position	The protein composition of bovine milk is well-studied, and many glycoproteins carrying N-glycans and O-glycans have been found in commercial whey protein products.
34649671	6	40	gly	predominance	927:938	arg1	the composition AND carbohydrates			the composition	carbohydrates					position	The HS present different structural characteristics, with those extracted from VC having a predominance of functionalized C-aliphatics (carbohydrates), low hydrophobicity, and a 90% proportion of cellulose/hemicellulose carbon in the composition.
32645579	6	44	part_of	CDP-TiO2	1437:1444	arg1	this optimal CDP-TiO2 composition	CDP		this optimal CDP-TiO2 composition		OGER	Site	CDP	P39880	position	The optimum content of CDP was 5% by weight, and this optimal CDP-TiO2 composition had a BPA adsorption capacity of 36.9 ± 1.0 mg g-1 compared with 24.1 ± 1.1 mg g-1 for CD-coated TiO2 (CD-TiO2) and 21.9 ± 1.5 mg g-1 for bare TiO2.
33493560	7	22	part_of	CH/MCM-48	1212:1220	arg1	The CH/MCM-48 composite	MCM		The CH/MCM-48 composite		OGER	Site	MCM	P22033	composite	The CH/MCM-48 composite is of significant recyclability and showed considerable affinities for the studied radioactive ions even in the presence of other metal ions (Cd (II), Pb (II), Zn (II), and Co (II)).
33406734	4	26	gly	sialylated	708:717	arg1	the sialylated glycan structure Sialyl-Lewis X				the sialylated glycan structure Sialyl-Lewis X						In the present study, we show an increased expression of the sialylated glycan structure Sialyl-Lewis X (SLeX) in the lung epithelium upon M. tuberculosis infection.
33691185	9	91	part_of	SELP-415K	1513:1521	arg1	SELP-415K GM-0111 compositions	SELP		SELP-415K GM-0111 compositions		PUBTATOR	Site	SELP	6403	positions	SELP-415K GM-0111 compositions were then used to provide localized protection from radiation induced tissue damage in a murine model of RIP.
33910725	3	28	part_of	Ch/PEG	414:419	arg1	different Ch/PEG composition	Ch/PEG		different Ch/PEG composition		OGER	Site	Ch/PEG	P09466	position	Chitosan (Ch) was crosslinked with a low molecular weight diepoxy-poly(ethylene glycol) (diePEG), and hydrogel films with different Ch/PEG composition and OPU content were prepared by casting.
32147344	5	25	gly	utilized	1010:1017	arg2	The PPS/rGO composition			The PPS/rGO composition						position	The PPS/rGO composition of 90: 10 (w/w) was selected because of having the highest biocompatibility and utilized in chitosan hydrogel.
33652073	7	43	part_of	lysostaphin	1441:1451	arg1	lysostaphin binding domain	lysostaphin		lysostaphin binding domain		Fterm	Site	lysostaphin		domain	Flow cytometry studies indicated a decrease in the binding-dependent fluorescent populations of S. aureus and B. cereus, for lysostaphin binding domain and PlyPH binding domain, respectively, in TSB compared to PBS.
33652073	2	79	part_of	possess	306:312	arg1	Both enzymes AND C-terminal binding domain	enzymes		domain		Fterm	Site	enzymes		domain	Both enzymes possess an N-terminal catalytic domain and C-terminal binding domain, with the latter conferring significant enzyme specificity.
33827016	1	7	part_of	carbon/MCM-41/alginate	195:216	arg1	A FeCl3-activated seaweed carbon/MCM-41/alginate hydrogel composite	MCM		A FeCl3-activated seaweed carbon/MCM-41/alginate hydrogel composite		OGER	Site	MCM	P22033	composite	A FeCl3-activated seaweed carbon/MCM-41/alginate hydrogel composite (ECAC/MCM-41/ ALG) cross-linked with calcium chloride (2% CaCl2) was synthesized for the biosorption of bisphenol A (BPA) plasticizer and basic blue (BB) dye.
32092426	1	16	part_of	ST-Zn-Se-NPs-AC	288:302	arg1	activated carbon (ST-Zn-Se-NPs-AC) composite	NPs		activated carbon (ST-Zn-Se-NPs-AC) composite		OGER	Site	NPs	P0C0P6	composite	In this study, the starch-capped zinc selenide nanoparticles loaded on activated carbon (ST-Zn-Se-NPs-AC) composite was fabricated, and then it was used for removing Basic Fuchsin (BF) dye from aqueous solution.
33712120	5	44	gly	composition	722:732	arg1	the pectin composition			the pectin composition	the pectin composition		Site			position	The results showed that the pectin composition of their leaves was similar in terms of galacturonic acid, monosaccharide composition, degree of esterification, functional groups, nuclear magnetic resonance spectrum and morphological characteristics.
32972156	6	1	part_of	GPs-diplacone	656:668	arg1	GPs-diplacone composites	GPs		GPs-diplacone composites		OGER	Site	GPs		composites	The aim of this study was to compare anti-inflammatory potential of GPs-diplacone composites with the compound itself, GPs themselves and the physical mixture of GPs and diplacone.
32972156	6	44	part_of	GPs	750:752	arg1	GPs-diplacone composites	GPs		GPs-diplacone composites		OGER	Site	GPs		composites	The aim of this study was to compare anti-inflammatory potential of GPs-diplacone composites with the compound itself, GPs themselves and the physical mixture of GPs and diplacone.
33169014	5	34	gly	afucosylated	1063:1074	arg1	afucosylated IgG1	afucosylated IgG1				OGER		IgG1	P01857		These results show that disease severity in COVID-19 correlates with the presence of proinflammatory IgG Fc structures, including afucosylated IgG1.
33691185	9	24	gly	used	1554:1557	arg2	SELP-415K GM-0111 compositions			SELP-415K GM-0111 compositions						positions	SELP-415K GM-0111 compositions were then used to provide localized protection from radiation induced tissue damage in a murine model of RIP.
32248230	5	39	gly	fucosylated	1058:1068	arg1	fucosylated and sialylated HMOs	fucosylated and sialylated HMOs				OGER		HMOs	P00540		This approach identified over 100 different glycoforms and showed a wide diversity of milk composition, with a predominance of fucosylated and sialylated HMOs over nonmodified HMOs.
32248230	5	44	gly	sialylated	1074:1083	arg1	fucosylated and sialylated HMOs	fucosylated and sialylated HMOs				OGER		HMOs	P00540		This approach identified over 100 different glycoforms and showed a wide diversity of milk composition, with a predominance of fucosylated and sialylated HMOs over nonmodified HMOs.
33430198	1	106	gly	used	297:300	arg2	Compositions			Compositions						positions	Compositions based on chitosan/β-glycerophosphate hydrogels with highly porous polylactide granules can be used to obtain moldable bone graft materials that have osteoinductive and osteoconductive properties.
34203983	3	10	part_of	gut	399:401	arg1	human gut microbiota phylogenetic composition	gut		human gut microbiota phylogenetic composition		PUBTATOR	Site	gut	110006	position	Thus, the impact of soluble AX isolated from rice bran fiber on human gut microbiota phylogenetic composition and short-chain fatty acid (SCFA) production patterns from normal-weight and overweight/obese subjects was investigated through in vitro fecal fermentation.
34480908	7	42	part_of	CS/WS2/Ru	1175:1183	arg1	biologically active CS/WS2/Ru composite	CS		biologically active CS/WS2/Ru composite		PUBTATOR	Site	CS	1431	composite	Herein, we synthesized biologically active CS/WS2/Ru composite by liquid exfoliation approach.
34235650	2	22	gly	used	233:236	arg2	the lipid composition			the lipid composition						position	As such the lipid composition is commonly used to characterize mycobacterial strains at the species and type-species levels.
33908161	3	40	part_of	HA	781:782	arg1	the three HA fragments	HA		the three HA fragments		Cterm	Site	HA		fragments	AIMS Examination of three molecular weight (Mw) fractions of hyaluronic acid: 1) average Mw of the high fraction: 1.5-2 MDa, 2) average Mw of the medium fraction: 200-500 kDa, and 3) average Mw of the low fraction: 5-10 kDa and a unique 1:1:1 composite complex of the three HA fragments (Triluronic® Acid) was done to examine the influence of the HA on two critical skin cell protein targets: hyaluronan synthase-1 (HAS-1) and the HA binding protein cluster of differentiation 44 (CD44).
32825916	4	12	gly	used	570:573	arg2	The Fe-hemin-MOFs/CS-rGO composite			The Fe-hemin-MOFs/CS-rGO composite						composite	The Fe-hemin-MOFs/CS-rGO composite was used to construct a novel H2O2 electrochemical sensor.
34578474	2	78	gly	glycopeptides	425:437	arg2	glycopeptides			glycopeptides						glycopeptides	For comprehensive characterization of their extreme structural complexity occurring in >50% of human proteins, time-consuming multi-step enrichment of glycopeptides is required.
32241428	4	56	part_of	HPPy	653:656	arg1	dynamic cross-linking sites	HPPy		dynamic cross-linking sites		OGER	Site	HPPy	P01298	sites	The formed HPPy@CNF nanohybrids not only serve as dynamic cross-linking sites to construct a strong and stable network, but also impart a remarkable conductive ability to biopolymer materials.
34216844	4	39	part_of	Ag-β-CD	480:486	arg1	The Ag-β-CD composite	-CD		The Ag-β-CD composite		PUBTATOR	Site	-CD	65057	composite	The Ag-β-CD composite was used to detect ciprofloxacin by employing differential pulse voltammetry (DPV) and cyclic voltammetry (CV).
34961941	2	114	part_of	Chemical	482:489	arg1	fatty acid composition	Chemical traits		fatty acid composition		OGER	Site	Chemical traits	Q96CJ1	position	Chemical traits such as total volatile basic nitrogen (TVB-N), peroxide value (PV), thiobarbituric reactive substances (TBARs), free fatty acids (FFA), fatty acid composition and TC (total carbonyl) of samples were carried out at 4°C. Moreover, their pH and sensory properties were also determined at the same conditions.
31933111	1	28	gly	found	292:296	arg1	PAP AND the lipopolysaccharides	PAP			the lipopolysaccharides	OGER		PAP	P51003		OBJECTIVES To compare the microbial load and composition and to determine the lipopolysaccharides (LPS) and lipoteichoic acid (LTA) concentrations found in primary apical periodontitis (PAP) and post-treatment apical periodontitis (PTAP), correlating these findings with clinical/tomographic features.
33770858	6	49	part_of	SOM	1126:1128	arg1	SOM composition	SOM		SOM composition		OGER	Site	SOM	Q8TE85	position	Our results show that SOM composition is spatially structured and linked to microtopography; however, the vegetation, soil properties, and bacterial community composition did not show overall spatial structuring.
33770858	3	66	part_of	SOM	839:841	arg1	the molecular compositions	SOM		the molecular compositions		OGER	Site	SOM	Q8TE85	positions	A total of 70 soil samples were collected at two different depths from 36 spots systematically arranged over an area of about 300 m × 50 m. Pyrolysis-gas chromatography/mass spectrometry and pyrosequencing of the 16S rRNA gene were used to identify the molecular compositions of the SOM and bacterial community, respectively.
34523465	0	21	part_of	polysaccharose-FeS	67:84	arg1	polysaccharose-FeS@ biochar composites	FeS		polysaccharose-FeS@ biochar composites		OGER	Site	FeS	P07332	composites	Improved Pb(II) removal in aqueous solution by sulfide@biochar and polysaccharose-FeS@ biochar composites: Efficiencies and mechanisms.
32708305	8	36	part_of	NKp30	1233:1237	arg1	the stalk region	NKp30		the stalk region		PUBTATOR	Site	NKp30	259197	region	Overall, this study provides new insights into the structural basis of NKp30 oligomerization and explains how the stalk region and glycosylation of NKp30 affect its ligand affinity.
34578474	6	38	gly	glycopeptides	1359:1371	arg2	under-explored sialylated glycopeptides			under-explored sialylated glycopeptides						glycopeptides	Using this strategy, we achieved personalized profiles of patients with hepatitis B virus (HBV, n = 3) and hepatocellular carcinoma (HCC, n = 3) at the depth of >3000 glycopeptides, especially for the large-scale identification of under-explored sialylated glycopeptides.
34578474	6	51	gly	glycopeptides	1269:1281	arg2	>3000 glycopeptides			>3000 glycopeptides						glycopeptides	Using this strategy, we achieved personalized profiles of patients with hepatitis B virus (HBV, n = 3) and hepatocellular carcinoma (HCC, n = 3) at the depth of >3000 glycopeptides, especially for the large-scale identification of under-explored sialylated glycopeptides.
34578474	6	89	gly	sialylated	1348:1357	arg1	under-explored sialylated glycopeptides			under-explored sialylated glycopeptides						glycopeptides	Using this strategy, we achieved personalized profiles of patients with hepatitis B virus (HBV, n = 3) and hepatocellular carcinoma (HCC, n = 3) at the depth of >3000 glycopeptides, especially for the large-scale identification of under-explored sialylated glycopeptides.
34464865	2	31	part_of	chitin-biocalcium	314:330	arg1	a low-cost chitin-biocalcium (CC) composite	chitin		a low-cost chitin-biocalcium (CC) composite		Fterm	Site	chitin		composite	In this study, a low-cost chitin-biocalcium (CC) composite was developed by a facile alkali activation process from shell waste for typical antibiotics ciprofloxacin (CIP) removal.
32793574	7	36	gly	sialylated	1163:1172	arg1	sialylated IgG4	sialylated IgG4				OGER		IgG4	P01861		All subtypes are equally well amenable to targeted glycosylation, except sialylated IgG4 which frequently accumulates substantial fractions of unusual oligo-mannosidic structures.
32679321	1	12	part_of	Human	300:304	arg1	Human Elastin-Like Polypeptide	Human Elastin		Human Elastin-Like Polypeptide		PUBTATOR	Site	Human Elastin	2006	Polypeptide	In this contribution we describe the preparation and characterization of a series of cross-linked films based on the combination of an elastin-derived biomimetic polypeptide (Human Elastin-Like Polypeptide, HELP) with alginate (ALG) to obtain a composite with enhanced properties.
32679321	1	28	part_of	Elastin-Like	306:317	arg1	Human Elastin-Like Polypeptide	Human Elastin		Human Elastin-Like Polypeptide		PUBTATOR	Site	Human Elastin	2006	Polypeptide	In this contribution we describe the preparation and characterization of a series of cross-linked films based on the combination of an elastin-derived biomimetic polypeptide (Human Elastin-Like Polypeptide, HELP) with alginate (ALG) to obtain a composite with enhanced properties.
32679321	1	72	part_of	elastin-derived	260:274	arg1	an elastin-derived biomimetic polypeptide	elastin		an elastin-derived biomimetic polypeptide		PUBTATOR	Site	elastin	2006	polypeptide	In this contribution we describe the preparation and characterization of a series of cross-linked films based on the combination of an elastin-derived biomimetic polypeptide (Human Elastin-Like Polypeptide, HELP) with alginate (ALG) to obtain a composite with enhanced properties.
34791994	2	5	gly	used	330:333	arg2	composite			composite						composite	And the composite prepared from graphene oxide/chitosan, due to its favorable physical and chemical properties, have been used as a drug delivery system.
32475561	1	23	gly	polysaccharides	149:163	arg1	Nanocomposites			Nanocomposites	Nanocomposites		Site			Nanocomposites	Nanocomposites from plant-derived polysaccharides and proteins are green and sustainable materials that can be applied in various food and biomedical fields.
33189756	0	17	part_of	Long-term	0:8	arg1	Long-term antibacterial composite	Long		Long-term antibacterial composite		OGER	Site	Long		composite	Long-term antibacterial composite via alginate aerogel sustained release of antibiotics and Cu used for bone tissue bacteria infection.
32217362	7	71	gly	O-glycopeptides	1137:1151	arg2	The O-glycopeptides			The O-glycopeptides						O-glycopeptides	The O-glycopeptides were detected and identified by flow injection analysis combined with electrospray ionization mass spectrometry and tandem mass spectrometry using collision-induced dissociation and electron transfer dissociation.
32429482	5	51	part_of	PEM-20	1211:1216	arg1	deposition	PEM		deposition		OGER	Site	PEM	P15941	position	Finally, ex situ ATR-FTIR measurements on the PEL solutions after deposition of PEM-20 revealed the distinct release of PEL from the PEM solely for cS = 1.0 M, due to the highest mobility of PEL under high salt conditions.
33541662	3	6	gly	position	556:563	arg1	the glucoseamine backbone			position	the glucoseamine backbone					position	13C NMR experiments provided additional information about the position of the deuterons in the glucoseamine backbone.
33529630	2	15	gly	used	483:486	arg2	the synthesised CNF/AgNPs composite			the synthesised CNF/AgNPs composite						composite	In this work, cellulose nanofibril (CNF), a versatile biopolymer was used to support and disperse silver nanoparticles (AgNPs), and the synthesised CNF/AgNPs composite was used to improve the performance of sodium acetate trihydrate (SAT).
32057852	4	30	part_of	HNT/CTS/PCN	727:737	arg1	HNT/CTS/PCN nanocomposite	PCN		HNT/CTS/PCN nanocomposite		OGER	Site	PCN	Q15149	nanocomposite	Based on the obtained results, HNT/CTS/PCN nanocomposite prepared with the molar ratio of 2:1:2 had the best loading capacity (34.6 mg/g) compared with pure HNT (18.3 mg/g).
33644618	2	43	gly	glycoforms	268:277	arg1	2 different TSH glycoforms	2 different TSH glycoforms				OGER		TSH			The circulating TSH comprises 2 different TSH glycoforms: TSHdi with 2 and TSHtri with 3 N-glycans and methods have developed to determine their contents of anionic monosaccharides (AMS), that is, sialic acid (SA) and sulfonated N-acetylglactosamine (SU) residues.
33644618	2	65	gly	acid	426:429	arg1	residues			residues						residues	The circulating TSH comprises 2 different TSH glycoforms: TSHdi with 2 and TSHtri with 3 N-glycans and methods have developed to determine their contents of anionic monosaccharides (AMS), that is, sialic acid (SA) and sulfonated N-acetylglactosamine (SU) residues.
34314490	2	36	gly	glycoprotein	412:423	arg1	the S-layer glycoprotein	the S-layer glycoprotein				Fterm		glycoprotein			The composition of an N-linked glycan decorating both the S-layer glycoprotein and archaellins offers one such example.
32234599	2	17	part_of	BiOBr/CCNF	411:420	arg1	BiOBr/CCNF composite	CCNF		BiOBr/CCNF composite		OGER	Site	CCNF	P41002	composite	Subsequently, this CCNF was combined with bismuth oxybromide (BiOBr) to form BiOBr/CCNF composite.
33142579	7	3	part_of	CNF/PLA	1307:1313	arg1	CNF/PLA composites	CNF		CNF/PLA composites		PUBTATOR	Site	CNF	4868	composites	The surface esterification of the CNFs improved their dispersibility and interfacial compatibility with PLA, thereby achieving the mechanical enhancement of CNF/PLA composites.
33545855	10	59	part_of	PCL/PEG/chitosan-keratin	1352:1375	arg1	The composite	PCL		The composite		PUBTATOR	Site	PCL	5252	composite	The composite of PCL/PEG/chitosan-keratin with 30 wt% of diclofenac potassium also exhibited high cell viability and wound healing rates in vitro cytotoxicity testing.
32829873	4	42	part_of	2,1-β-D-Fruf	439:450	arg1	2,1-β-D-Fruf residues	2,1		2,1-β-D-Fruf residues		OGER	Site	2,1	P35326	residues	Structural analyses reveal that ACNP has a linear backbone composed of 2,1-β-D-Fruf residues, ending with a (1→2) bonded α-D-Glcp.
34232652	2	49	part_of	MOS	249:251	arg1	the composition	MOS		the composition		OGER	Site	MOS	P00540	position	We studied the composition of goat MOS (gMOS) from colostrum up to the 9th month of lactation to conceive an overview of the structures present and their fate.
32516910	7	32	gly	sialylated	1167:1176	arg1	sialylated bisecting biantennary glycan				sialylated bisecting biantennary glycan						Only serum core fucosylated, sialylated bisecting biantennary glycan (FA2BG2S2) showed significant differences between any two stages of transplantation (day -3/-7 and day +14; p = 0.0279).
33139538	4	3	part_of	glycosyltransferase	732:750	arg1	three domains	glycosyltransferase		three domains		Fterm	Site	glycosyltransferase		domains	Previous data collected from 20 PBCV-1 spontaneous mutants (or antigenic variants) suggested that the a064r gene encodes a glycosyltransferase (GT) with three domains, each with a different function.
33376510	0	35	gly	transporter	132:142	arg1	N-glycan alteration	organic cation transporter member 2			N-glycan alteration	PUBTATOR		organic cation transporter member 2	6582		Silencing GnT-V reduces oxaliplatin chemosensitivity in human colorectal cancer cells through N-glycan alteration of organic cation transporter member 2.
32516910	3	18	gly	sialoglycoprotein	404:420	arg1	Altered salivary sialoglycoprotein carbohydrates				Altered salivary sialoglycoprotein carbohydrates						Altered salivary sialoglycoprotein carbohydrates are important in the pathologies in the oral cavity including inflammation, infection and neoplasia.
32217362	8	8	gly	used	1423:1426	arg2	O-Glycopeptides			O-Glycopeptides						O-Glycopeptides	O-Glycopeptides bearing a variety of O-glycans could be used as a substrate for endo-α-N-acetyl galactosaminidase, and their various O-glycan structures were useful for the investigation of enzyme activities.
34551196	3	56	gly	used	705:708	arg2	GLY			GLY						GLY	RESULTS In this research, glycidyl methacrylate (GMA) was used as an intermediate and glycine methyl ester (GLY) was used as an organic nitrogen source to modify carboxymethyl cellulose (CMC) to synthesize a pesticide nanocarrier CMC-PGMA-GLY.
32217362	4	24	part_of	κ-casein	564:571	arg1	κ-casein glycomacropeptide	-casein		κ-casein glycomacropeptide		PUBTATOR	Site	-casein	281728	glycomacropeptide	In particular, κ-casein glycomacropeptide and lactophorin, which have several O-glycans, are known to exist in whey protein.
34216844	4	51	gly	used	502:505	arg2	The Ag-β-CD composite			The Ag-β-CD composite						composite	The Ag-β-CD composite was used to detect ciprofloxacin by employing differential pulse voltammetry (DPV) and cyclic voltammetry (CV).
32829845	5	16	part_of	Er	1080:1081	arg1	Yb and Er doped CQDs/DANFC composites	Er		Yb and Er doped CQDs/DANFC composites		PUBTATOR	Site	Er	2069	composites	The study provides a novel method to prepare the waterborne fluorescent dual anti-counterfeiting ink based on Yb and Er doped CQDs/DANFC composites, which provides a reference for its application in printing and packaging industry.
32657258	0	18	part_of	ORC/PCL	30:36	arg1	bilayer ORC/PCL composites	ORC		bilayer ORC/PCL composites		OGER	Site	ORC		composites	In vivo evaluation of bilayer ORC/PCL composites in a rabbit model for using as a dural substitute.
33793546	4	36	part_of	epitopes	605:612	arg1	S	S		epitopes		PUBTATOR	Site	S	43740568	epitopes	By mapping steric accessibility, structural rigidity, sequence conservation, and generic antibody binding signatures, we recover known epitopes on S and reveal promising epitope candidates for structure-based vaccine design.
33644618	7	75	gly	sialylation	1161:1171	arg1	the glycans				the glycans						Levothyroxin restored sialylation and sulfonation of the glycans already at low free thyroxine (FT4) levels, while degree of N-glycosylation was not restored until the FT4 levels were normal.
34165952	10	137	gly	dextran-borate-glycoprotein	1901:1927	arg1	dextran-borate-glycoprotein	dextran-borate-glycoprotein				Fterm		dextran-borate-glycoprotein			This latter gel took advantage of the dextran-borate-glycoprotein complexation.
32708063	0	75	part_of	Lipoproteins	84:95	arg1	Composition	Lipoproteins		Composition		Fterm	Site	Lipoproteins		position	Microencapsulated Pomegranate Modifies the Composition and Function of High-Density Lipoproteins (HDL) in New Zealand Rabbits.
34019926	9	43	gly	used	1133:1136	arg2	The developed nano-fiber composites			The developed nano-fiber composites						composites	The developed nano-fiber composites can be potentially used as drug-delivery vehicles due to their efficiency and sustained drug release capacity.
34817202	11	131	gly	glycoprotein	1843:1854	arg1	the native SARS-CoV-2 S glycoprotein	the native SARS-CoV-2 S glycoprotein				PUBTATOR		S glycoprotein	43740568		These findings enhance our understanding of the Golgi processing of the native SARS-CoV-2 S glycoprotein carbohydrates and could assist the design of interventions.
33139538	3	25	part_of	sequon	586:591	arg1	the three domains	sequon		the three domains						domains	Importantly, these glycans differ from those reported from the three domains of life in terms of structure and asparagine location in the sequon of the protein.
33139538	3	69	part_of	domains	517:523	arg1	the sequon	domains		the sequon						sequon	Importantly, these glycans differ from those reported from the three domains of life in terms of structure and asparagine location in the sequon of the protein.
33139538	3	71	part_of	protein	600:606	arg1	the sequon	protein		the sequon		Fterm	Site	protein		sequon	Importantly, these glycans differ from those reported from the three domains of life in terms of structure and asparagine location in the sequon of the protein.
33436218	2	31	gly	attached	523:530	arg3	t-β-D-Glcp AND the O-6 position			the O-6 position	t-β-D-Glcp					position	Structural analyses reveal that SHNP is completely composed of glucose, and its backbone consists of β-D-(1→3)-Glcp with side chains comprising t-β-D-Glcp attached at the O-6 position.
34578474	3	18	gly	glycopeptides	631:643	arg2	glycopeptides			glycopeptides						glycopeptides	Here we report zwitterionic n-dodecylphosphocholine-functionalized magnetic nanoparticles (ZIC-cHILIC@MNPs) as a highly efficient affinity nanoprobe for large-scale enrichment of glycopeptides.
32350116	1	56	gly	glycoproteins	294:306	arg1	various glycoproteins	various glycoproteins				Fterm		glycoproteins			Core fucose is an N-glycan structure synthesized by α1,6-fucosyltransferase 8 (FUT8) localized to the Golgi apparatus and critically regulates the functions of various glycoproteins.
32429482	4	4	part_of	PEM	915:917	arg1	the consecutive PEM deposition	PEM		the consecutive PEM deposition		OGER	Site	PEM	P15941	position,	Furthermore, in situ ATR-FTIR allowed to determine the detailed modulation of the PEL composition during the consecutive PEM deposition, which was interpreted as being due to both diffusion of given PEL from the PEM interior towards the outermost region and release of the PEM upon contact with the bulk oppositely charged PEL solution.
34641521	2	80	part_of	domain	431:436	arg1	the crude enzyme	enzyme		domain		Fterm	Site	enzyme		domain	We characterized the crude enzyme from bacterial culture fluid, recombinant enzyme rChit62J4, and its catalytic domain rChit62J4cat.
33962112	3	27	part_of	CDs-HQDs/HPCCS/UN	679:695	arg1	The CDs-HQDs/HPCCS/UN nanocomposites	CDs		The CDs-HQDs/HPCCS/UN nanocomposites		OGER	Site	CDs	Q92903	nanocomposites	The CDs-HQDs/HPCCS/UN nanocomposites exhibited a single-excitation (440 nm), dual-emission fluorescence property (505 nm and 628 nm for green and red light from CDs-HQDs and HPCCS/UN NPs).
33493560	2	54	part_of	CH/MCM-48	318:326	arg1	The prepared CH/MCM-48 composite	MCM		The prepared CH/MCM-48 composite		OGER	Site	MCM	P22033	composite	The prepared CH/MCM-48 composite was applied in systematic retention of U (VI) as well as Sr (II) ions from water as the commonly detected radioactive pollutants.
34200763	6	47	part_of	EC/Chs	1230:1235	arg1	the mTHPP EC/Chs nanocomposite	Chs		the mTHPP EC/Chs nanocomposite		OGER	Site	Chs	Q99698	nanocomposite	Different laser wavelengths (458; 476; 488; 515; 635 nm), powers (5-70 mW), and exposure times (15-45 min) were investigated in the antimicrobial photodynamic therapy (aPDT) experiments, with the best inhibition observed using 635 nm with the mTHPP EC/Chs nanocomposite for C. albicans (59 ± 0.21%), P. aeruginosa (71.7 ± 1.72%), and S. aureus (74.2 ± 1.26%) with illumination of only 15 min.
31981661	5	51	gly	used	887:890	arg2	prepared composite			prepared composite						composite	Desorption studies revealed that prepared composite can be used up to three cycles efficiently and thermodynamic parameters such as Gibbs free energy (ΔG0), enthalpy (ΔH0) and entropy (ΔS0) changes showed the adsorption of CR onto [poly (Gg-AAm)/ZVI] was feasible, spontaneous and endothermic.
33361843	9	40	part_of	PPS	1597:1599	arg1	their compositions	PPS		their compositions		OGER	Site	PPS	Q9BT40	positions	With the oral administration of PPS and their compositions with pectin towhite rats, 30 minutes before the administration of butadion, an increase in the processes of reparative regeneration in the cells of the covering epitheliumof the esophagus was observed.
34299652	2	69	gly	used	393:396	arg2	its composites			its composites						composites	Polylactic acid (PLA) and its composites are currently used for the construction of IMDs.
34299163	7	38	part_of	sites	1267:1271	arg1	TGF-β2	TGF-β2		sites		PUBTATOR	Site	TGF-β2	7042	sites	Interestingly, CVLS led to identification of two distinct sites of GAG binding on TGF-β2.
34817202	3	136	gly	glycoprotein	389:400	arg1	the SARS-CoV-2 S glycoprotein	the SARS-CoV-2 S glycoprotein				PUBTATOR		S glycoprotein	43740568		Approximately 35% of the SARS-CoV-2 S glycoprotein consists of carbohydrate, which can influence virus infectivity and susceptibility to antibody inhibition.
32657258	3	70	part_of	ORC/PCL	587:593	arg1	new bilayer ORC/PCL composites	ORC		new bilayer ORC/PCL composites		OGER	Site	ORC		composites	This study aimed to assess the effectiveness and safety of new bilayer ORC/PCL composites in a rabbit model.
32534088	1	17	part_of	CS-TPP/FA	324:332	arg1	a cross-linked CS-TPP/FA composite	TPP		a cross-linked CS-TPP/FA composite		OGER	Site	TPP	Q68CZ2	composite	Chitosan (CS) was physically modified with fly ash (FA) powder and subjected to chemical cross-linking reaction with tripolyphosphate (TPP) to produce a cross-linked CS-TPP/FA composite as adsorbent for removal of reactive orange 120 (RR120) dye.
34119175	2	49	part_of	multi-layer	354:364	arg1	The multi-layer wet-on-wet cellulose nanofiber composites	multi		The multi-layer wet-on-wet cellulose nanofiber composites		OGER	Site	multi		composites	The multi-layer wet-on-wet cellulose nanofiber composites were developed using a vacuum filtration process.
32764939	1	84	part_of	3D	129:130	arg1	a 3D printed composite	a 3D		a 3D printed composite		OGER	Site	a 3D	Q96AK3	composite	INTRODUCTION In this in-vitro study, we designed a 3D printed composite of zinc oxide (ZnO) nanoparticles (NPs) with photocatalytic activities encapsulated within hydrogel (alginate) constructs, for antibacterial purposes applicable towards wound healing.
33815445	1	71	gly	glycoproteins	254:266	arg1	immunomodulatory glycoproteins	immunomodulatory glycoproteins				Fterm		glycoproteins			Secretions of parasitic worms (helminths) contain a wide collection of immunomodulatory glycoproteins with the potential to treat inflammatory disorders, like autoimmune diseases.
32147344	4	38	part_of	PPS/rGO	791:797	arg1	the PPS/rGO composite	PPS		the PPS/rGO composite		OGER	Site	PPS	Q9BT40	composite	Thermal behavior of the PPS/rGO composite was evaluated by differential scanning calorimetry (DSC) and thermal gravimetric analysis (TGA).
34294810	10	38	part_of	multi-species	1398:1410	arg1	in vitro multi-species oral biofilm composition	multi		in vitro multi-species oral biofilm composition		OGER	Site	multi		position,	Overall, NADM was found to have different effects at two concentrations that beneficially modulate in vitro multi-species oral biofilm composition, metabolism, virulence and inflammatory potential.
33376510	7	54	gly	structures	1099:1108	arg1	OCT2	OCT2			structures	PUBTATOR		OCT2	6582		Furthermore, the knockdown of GnT-V caused a marked reduction in the presence of β-1,6-GlcNAc structures on OCT2 and decreased the localization of OCT2 in the cytomembrane, which were associated with a reduced uptake of oxaliplatin in wild-type and oxaliplatin-resistant CW-2 cells.
34314490	4	7	part_of	proteins	956:963	arg1	selected asparagine residues	proteins		selected asparagine residues		Fterm	AminoAcid	proteins		asparagine residues	To clarify these points, liquid chromatography-electrospray ionization mass spectrometry was employed here to revisit the composition of this glycan both when attached to selected asparagine residues of target proteins and when bound to the lipid dolichol phosphate upon which the glycan is assembled.
33169014	3	46	gly	afucosylated	597:608	arg1	afucosylated Fc glycans				afucosylated Fc glycans						Here we show that patients with severe COVID-19 produced a unique serologic signature, including an increased likelihood of IgG1 with afucosylated Fc glycans.
33169014	3	49	gly	IgG1	587:590	arg1	afucosylated Fc glycans	IgG1			afucosylated Fc glycans	OGER		IgG1	P01857		Here we show that patients with severe COVID-19 produced a unique serologic signature, including an increased likelihood of IgG1 with afucosylated Fc glycans.
33770858	10	79	part_of	SOM	1703:1705	arg1	SOM composition	SOM		SOM composition		OGER	Site	SOM	Q8TE85	position	Our results suggest that SOM composition at a local scale is closely linked with soil factors and the bacterial community.
34141584	1	15	gly	glycosylation	182:194	arg1	proteins	proteins				Fterm		proteins			Congenital disorders of glycosylation (CDG) constitute an ever-growing group of genetic diseases affecting the glycosylation of proteins.
32708305	8	30	gly	glycosylation	1216:1228	arg1	NKp30	NKp30				PUBTATOR		NKp30	259197		Overall, this study provides new insights into the structural basis of NKp30 oligomerization and explains how the stalk region and glycosylation of NKp30 affect its ligand affinity.
33615714	1	22	gly	glycoproteins	255:267	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			A series of nucleotide sugar interconversion enzymes (NSEs) generate the activated sugar donors required for biosynthesis of cell wall matrix polysaccharides and glycoproteins.
34087770	5	40	part_of	PVA	1120:1122	arg1	PVA@SOF hybrid nanocomposite	PVA		PVA@SOF hybrid nanocomposite		OGER	Site	PVA	P32926	nanocomposite	Also, the value of KSV was documented at 0.0014 and 7.16 min-1 for Cs@SOF and PVA@SOF hybrid nanocomposite.
32612952	10	51	gly	N-GlcNAc	1644:1651	arg1	EGFR	EGFR			N-GlcNAc	PUBTATOR		EGFR	1956		Taken together, we conclude that bisecting N-GlcNAc on EGFR inhibits malignant phenotype of breast cancer via down-regulation of EGFR/Erk signaling.
33652073	0	30	gly	enzymes	82:88	arg1	peptidoglycan binding	enzymes			peptidoglycan binding	Fterm		enzymes			Influence of bacterial culture medium on peptidoglycan binding of cell wall lytic enzymes.
32173440	2	7	part_of	pectin	489:494	arg1	a polymer composition	pectin		a polymer composition		Fterm	Site	pectin		position	Films with the highest mechanical properties were acquired using a polymer composition of 65.2% glycerol, 24.3% gelatin, 10.0% chitosan and 0.5% pectin.
32718597	5	6	part_of	PVA/RCS	852:858	arg1	the fabricated PVA/RCS composites	PVA		the fabricated PVA/RCS composites		OGER	Site	PVA	P32926	composites	Intriguingly, the fabricated PVA/RCS composites exhibited good pH-sensitivity due to internal hydrogen bonding.
33393184	3	12	part_of	protein	351:357	arg1	the protein compositions	protein		the protein compositions		Fterm	Site	protein		positions	This study takes the advantage of high-resolution proteomic analysis to unveil the protein compositions.
32475918	4	8	gly	PSP	529:531	arg1	The monosaccharide components	PSP			The monosaccharide components	OGER		PSP	Q96DR5		The monosaccharide components of PSP were galactose, rhamnose, arabinose, mannose, and glucose at a molar ratio of 11.72 : 1.78 : 4.15 : 1.00 : 2.48.
32475918	4	8	gly	PSP	529:531	arg1	galactose	PSP			galactose	OGER		PSP	Q96DR5		The monosaccharide components of PSP were galactose, rhamnose, arabinose, mannose, and glucose at a molar ratio of 11.72 : 1.78 : 4.15 : 1.00 : 2.48.
33712145	6	1	gly	glycoprotein	969:980	arg1	the spike glycoprotein	the spike glycoprotein				PUBTATOR		spike glycoprotein	43740568		Furthermore, we show that the spike glycoprotein of COVID-19 binds 3.5 times stronger to human lung heparan sulfate than bat lung heparan sulfate.
32599270	3	30	part_of	MCC	564:566	arg1	co-processed composite	MCC		co-processed composite		OGER	Site	MCC		composite	Physical mixture (PM) and co-processed composite (Cop) of MCC and sodium carboxymethyl cellulose (SCMC) replaced MCC as pelletization aids.
34817202	6	57	gly	glycoprotein	1033:1044	arg1	the wild-type S glycoprotein N-linked glycans				the wild-type S glycoprotein N-linked glycans						Compared with soluble or solubilized S glycoproteins modified to prevent proteolytic cleavage and to retain a prefusion conformation, more of the wild-type S glycoprotein N-linked glycans are processed to complex forms.
34817202	6	103	gly	glycoproteins	914:926	arg1	soluble or solubilized S glycoproteins	soluble or solubilized S glycoproteins				PUBTATOR		S glycoproteins	43740568		Compared with soluble or solubilized S glycoproteins modified to prevent proteolytic cleavage and to retain a prefusion conformation, more of the wild-type S glycoprotein N-linked glycans are processed to complex forms.
33571209	10	86	gly	cluster	1574:1580	arg1	Dickeya	Dickeya spp			cluster	OGER		Dickeya spp	Q8TCT9		However, comparatively less variation is observed in the putative O-antigen lipopolysaccharide cluster in Dickeya spp.
34216844	2	58	part_of	Ag-β-CD	288:294	arg1	The Ag-β-CD composite	-CD		The Ag-β-CD composite		PUBTATOR	Site	-CD	65057	composite	The Ag-β-CD composite was synthesized via a hydrothermal route, which resulted in a high product yield.
33644618	10	86	gly	sialylation	1688:1698	arg1	glycans				glycans						During levothyroxine treatment of sPH patients, the sialylation and sulfonation of glycans were restored already at low FT4 levels, while N-glycosylation of TSH was not restored until the FT4 levels were normal.
33644618	10	90	gly	N-glycosylation	1774:1788	arg1	TSH	TSH				OGER		TSH			During levothyroxine treatment of sPH patients, the sialylation and sulfonation of glycans were restored already at low FT4 levels, while N-glycosylation of TSH was not restored until the FT4 levels were normal.
34817202	14	134	gly	glycoprotein	2229:2240	arg1	The SARS-CoV-2 spike glycoprotein	The SARS-CoV-2 spike glycoprotein				PUBTATOR		spike glycoprotein	43740568		The SARS-CoV-2 spike glycoprotein consists of a trimer of two subunits covered with a coat of carbohydrates (sugars).
34955268	10	74	gly	somatotropin	1522:1533	arg1	lower blood glucose	somatotropin			lower blood glucose	PUBTATOR		somatotropin	280804		Feeding LS resulted in lower blood glucose and greater ratio of bovine somatotropin to insulin.
32793574	3	37	gly	variants	473:480	arg1	a comprehensive expression and glycan modulation profiling	variants			a comprehensive expression and glycan modulation profiling	Fterm		variants			Here, we show a comprehensive expression and glycan modulation profiling of IgG variants in planta that are identical in their antigen binding domain but differ in their subclass appearance.
34817202	1	9	gly	glycoprotein	172:183	arg1	its spike (S) glycoprotein	its spike (S) glycoprotein				Fterm		glycoprotein			The SARS-CoV-2 coronavirus, the etiologic agent of COVID-19, uses its spike (S) glycoprotein anchored in the viral membrane to enter host cells.
33139538	2	10	gly	attached	410:417	arg1	its major capsid protein AND the glycans	its major capsid protein			the glycans	Fterm		protein			Unlike many other viruses, PBCV-1 encodes most, if not all, of the enzymes involved in the synthesis of the glycans attached to its major capsid protein.
32475444	5	44	gly	ratio	1198:1202	arg1	lysine			glutamic acid, glycine, lysine, valine						glutamic acid, glycine, lysine, valine	In addition, the CS200 group had higher glutamic acid, glycine, lysine, valine, total nonessential amino acids, total essential amino acids, total amino acids, C22:0, C16:1, C18:1, C20:1, C20:2, C20:5, total monounsaturated fatty acids concentration and polyunsaturated fatty acids (PUFA), and saturated fatty acids (SFA) ratio and lower total SFA, total PUFA concentration, and total n-6:n-3 ratio in breast muscle than the control group (P < 0.05).
33361843	8	93	gly	compositions	1416:1427	arg1	polysaccharides			positions	polysaccharides					positions	At the first stage of the study, the effect of PPS andtheir compositions with polysaccharides on reparative regeneration was studied against the background of its suppression in intact and irradiated animals.
32507169	4	11	part_of	HEC/PAA-PET	800:810	arg1	chemical composition	HEC		chemical composition		OGER	Site	HEC	O14777	position,	The properties of the two treated HEC/PAA-PET membranes, including surface morphology, chemical structure, chemical composition, thermal stability, mechanical property, and membrane wettability are systematically studied and compared to each other.
33923867	5	34	gly	fucosylated	720:730	arg1	the fucosylated bi-antennary glycan HexNAc4Hex5Fuc1NeuAc2				the fucosylated bi-antennary glycan HexNAc4Hex5Fuc1NeuAc2						In total, 23 N-glycan compositions were down-regulated in the serum of colon cancer patients, mostly galactosylated forms whilst the mannose-rich HexNAc2Hex7, the fucosylated bi-antennary glycan HexNAc4Hex5Fuc1NeuAc2, and the tetra-antennary HexNAc6Hex7NeuAc3 were up-regulated in serum.
32612952	0	73	gly	N-Acetylglucosamine	10:28	arg1	EGFR	EGFR			N-Acetylglucosamine	PUBTATOR		EGFR	1956		Bisecting N-Acetylglucosamine on EGFR Inhibits Malignant Phenotype of Breast Cancer via Down-Regulation of EGFR/Erk Signaling.
34480908	8	66	part_of	CS/WS2/Ru	1231:1239	arg1	The CS/WS2/Ru composites	CS		The CS/WS2/Ru composites		PUBTATOR	Site	CS	1431	composites	The CS/WS2/Ru composites exhibit significant antibacterial action towards (S. aureus, and E. coli) bacteria.
33770858	2	27	part_of	SOM	459:461	arg1	SOM composition	SOM		SOM composition		OGER	Site	SOM	Q8TE85	position	Our aim was to describe the relationships between vegetation, bacteria, soil properties, and SOM composition in moist acidic tundra by integrating physical, chemical, and molecular methods.
34894199	7	2	gly	Kinase	1068:1073	arg1	the intestine to regulate glucose metabolite status and ageing in mice	Kinase			the intestine to regulate glucose metabolite status and ageing in mice	Fterm		Kinase			It could upregulate the Signal Transducer and Activator of Transcription 3/Forkhead Box O1 (FOXO1)/B cell lymphoma 6 (Bcl-6) pathways in the brain and the c-Jun N-terminal Kinase (JNK)/FOXO1/Bcl-6 signaling axis in the intestine to regulate glucose metabolite status and ageing in mice.
34894199	7	29	gly	Transducer	927:936	arg1	the intestine to regulate glucose metabolite status and ageing in mice	Signal Transducer and Activator of Transcription 3			the intestine to regulate glucose metabolite status and ageing in mice	PUBTATOR		Signal Transducer and Activator of Transcription 3	20848		It could upregulate the Signal Transducer and Activator of Transcription 3/Forkhead Box O1 (FOXO1)/B cell lymphoma 6 (Bcl-6) pathways in the brain and the c-Jun N-terminal Kinase (JNK)/FOXO1/Bcl-6 signaling axis in the intestine to regulate glucose metabolite status and ageing in mice.
34894199	7	33	gly	Activator	942:950	arg1	the intestine to regulate glucose metabolite status and ageing in mice	Signal Transducer and Activator of Transcription 3			the intestine to regulate glucose metabolite status and ageing in mice	PUBTATOR		Signal Transducer and Activator of Transcription 3	20848		It could upregulate the Signal Transducer and Activator of Transcription 3/Forkhead Box O1 (FOXO1)/B cell lymphoma 6 (Bcl-6) pathways in the brain and the c-Jun N-terminal Kinase (JNK)/FOXO1/Bcl-6 signaling axis in the intestine to regulate glucose metabolite status and ageing in mice.
34894199	3	85	gly	dismutase	525:533	arg1	glucose metabolism	dismutase			glucose metabolism	Fterm		dismutase			EPO could significantly improve glucose metabolism and activity of total superoxide dismutase in serum.
33035694	6	28	part_of	NCs	1053:1055	arg1	the matrix deposition	NCs		the matrix deposition		OGER	Site	NCs		position	The overall goal of this study was to assess the effects of CS incorporation into disc derived self-assembled ECM hydrogels on the matrix deposition of NCs.
34450150	6	66	part_of	MCC-MH	1261:1266	arg1	MCC-MH composites	MCC		MCC-MH composites		OGER	Site	MCC		composites	Analytical studies showed that Co(II) adsorption on MCC-MH composites is affected by chemical adsorption and involves the influence of intraparticle diffusion to a certain extent.
32017022	5	48	gly	reactions	1154:1162	arg1	decomposition			decomposition						position	By enabling short residence times (2 min) that are challenging for mixed-vessel types of reactor to establish, the glycosynthase flow reactor succeeds in an effective uncoupling of the LNT II formation (∼80-100 mM/min) from the slower side reactions (decomposition of donor substrate, enzymatic hydrolysis of LNT II) to obtain optimum synthetic efficiency.
34578474	4	19	gly	sialylated	778:787	arg1	sialylated glycopeptide			sialylated glycopeptide						glycopeptide	We demonstrate that ZIC-cHILIC@MNPs possess excellent affinity, with 80-91% specificity for glycopeptide enrichment, especially for sialylated glycopeptide (90%) from biofluid specimens.
34578474	4	48	gly	glycopeptide	738:749	arg2	glycopeptide enrichment			glycopeptide enrichment						glycopeptide	We demonstrate that ZIC-cHILIC@MNPs possess excellent affinity, with 80-91% specificity for glycopeptide enrichment, especially for sialylated glycopeptide (90%) from biofluid specimens.
34578474	4	57	gly	glycopeptide	789:800	arg2	sialylated glycopeptide			sialylated glycopeptide						glycopeptide	We demonstrate that ZIC-cHILIC@MNPs possess excellent affinity, with 80-91% specificity for glycopeptide enrichment, especially for sialylated glycopeptide (90%) from biofluid specimens.
34119424	5	42	gly	N-glycosylation	871:885	arg2	approximately 147 kDa as a dimer and multiple N-glycosylation sites			approximately 147 kDa as a dimer and multiple N-glycosylation sites						sites	However, no recombinant expression system for IgNAR, which has a molecular weight of approximately 147 kDa as a dimer and multiple N-glycosylation sites, has yet been constructed.
32560446	9	69	part_of	BPA-based	2018:2026	arg1	the BPA-based composite	BPA		the BPA-based composite		OGER	Site	BPA	Q03001	composite	The findings show a better overall carbon footprint for the biocomposite compared to the BPA-based composite at almost all times, demonstrating a good potential for marketability especially in the presence of incentives or regulations that address reducing the carbon intensity of products.
32350116	3	54	part_of	Src	448:450	arg1	an Src homology 3 (SH3) domain	Src		an Src homology 3 (SH3) domain		OGER	Site	Src	P12931	domain	At the luminal side and uncommon for Golgi proteins, FUT8 has an Src homology 3 (SH3) domain, which is usually found in cytosolic signal transduction molecules and generally mediates protein-protein interactions in the cytosol.
32350116	3	43	part_of	has	441:443	arg1	FUT8 AND an Src homology 3 (SH3) domain	FUT8		an Src homology 3 (SH3) domain		PUBTATOR	Site	FUT8	2530	domain	At the luminal side and uncommon for Golgi proteins, FUT8 has an Src homology 3 (SH3) domain, which is usually found in cytosolic signal transduction molecules and generally mediates protein-protein interactions in the cytosol.
33181207	2	24	gly	utilized	373:380	arg2	functionalized seaweed-based composites			functionalized seaweed-based composites						composites	In this work, functionalized seaweed-based composites were successfully prepared and utilized in multiple stages.
32475561	0	25	part_of	protein-carboxymethylated	15:39	arg1	Core-shell pea protein-carboxymethylated corn fiber gum composite	protein		Core-shell pea protein-carboxymethylated corn fiber gum composite		Fterm	Site	protein		composite	Core-shell pea protein-carboxymethylated corn fiber gum composite nanoparticles as delivery vehicles for curcumin.
32070532	7	36	gly	utilized	1029:1036	arg2	The developed composites			The developed composites						composites	The developed composites may be utilized as excellent supports for enzyme immobilization in industrial application.
33139538	7	47	gly	protein	1408:1414	arg1	the N-glycan	protein			the N-glycan	Fterm		protein			This study, thus, identifies two of the glycosyltransferase activities involved in the synthesis of the N-glycan of the viral major capsid protein in PBCV-1 and establishes that a single protein A064R possesses the three activities needed to synthetize the 2-OMe-α-l-Rha-(1→2)-β-l-Rha fragment.
34200653	2	20	part_of	glycerin	351:358	arg1	the composite	glycerin		the composite		Fterm	Site	glycerin		composite	Herein, the composite of carboxymethyl nanocellulose, glycerin, and acrylamide derivatives acted as the shell and chitosan/AgNPs were immobilized in the core by using coaxial 3D-printing technology.
33770858	5	16	part_of	SOM	1008:1010	arg1	their SOM compositions	SOM		their SOM compositions		OGER	Site	SOM	Q8TE85	positions	The sampling sites were grouped into three, based on their SOM compositions: Sphagnum moss-derived SOM, lipid-rich materials, and aromatic-rich materials.
33940669	1	48	part_of	dentin	197:202	arg1	chemical composition	dentin		chemical composition		Fterm	Site	dentin		position	PURPOSE To evaluate the chemical composition and morphological properties of eroded dentin after biomodification with phosphorylated chitosan (P-Chi) and carbodiimide (EDC).
33785093	0	45	gly	Heparin/Poly-L-Lysine	53:73	arg1	Intercalated Polyurethane Heparin/Poly-L-Lysine Chelates			Lysine	Intercalated Polyurethane Heparin/Poly-L-Lysine Chelates					Lysine	Novel Copper Nanoparticles Intercalated Polyurethane Heparin/Poly-L-Lysine Chelates Coated Stents: Viability Study for Coronary Vascular Cells and Aneurysms Treatments.
32248537	11	32	gly	composition	1586:1596	arg1	important determinants			position	important determinants					position	CONCLUSION Salinity level, variety and cooking method are important determinants of tuber yield and composition.
32612952	7	40	gly	glycoproteins	1056:1068	arg1	the glycoproteins	the glycoproteins				Fterm		glycoproteins			Using PHA-E (a plant lectin recognizing and combining bisecting GlcNAc) based enrichment coupled with nanoLC-MS/MS, we analyzed the glycoproteins bearing bisecting GlcNAc in various breast cancer cells.
34283570	2	84	gly	glycoprotein	380:391	arg1	Lubricin	Lubricin				PUBTATOR		Lubricin	10216		Lubricin (LUB) is an innately biocompatible glycoprotein with impressive antifouling properties.
34283570	2	84	gly	glycoprotein	380:391	arg1	an innately biocompatible glycoprotein	an innately biocompatible glycoprotein				Fterm		glycoprotein			Lubricin (LUB) is an innately biocompatible glycoprotein with impressive antifouling properties.
34817202	7	75	gly	modified	1243:1250	arg3	Asn 234 AND processed glycans			Asn 234	processed glycans					Asn 234	Even Asn 234, a significant percentage of which is decorated by high-mannose glycans on other characterized S trimer preparations, is predominantly modified in the Golgi compartment by processed glycans.
33340625	4	9	part_of	GPs + bioactive	623:637	arg1	composites	GPs		composites		OGER	Site	GPs		composites	Two different methods - slurry evaporation and spray drying - were used to prepare composites (GPs + bioactive compound) and the anti-inflammatory and antioxidative properties of the resultant products were compared.
33856781	6	44	part_of	uMSCEXOs/Gel/nHP	877:892	arg1	the uMSCEXOs/Gel/nHP composites	nHP		the uMSCEXOs/Gel/nHP composites		OGER	Site	nHP		composites	Imaging and histological evaluation indicated that the uMSCEXOs/Gel/nHP composites markedly enhanced bone regeneration in vivo, and the uMSCEXOs might play a key role in this process.
33571209	14	5	gly	heterogeneity	2028:2040	arg1	O-antigen lipopolysaccharides				O-antigen lipopolysaccharides						These multiple HGT processes might have been manifested into the current heterogeneity of O-antigen capsules and O-antigen lipopolysaccharides in Dickeya strains during its evolution.
34817202	2	8	gly	glycoprotein	243:254	arg1	The S glycoprotein	The S glycoprotein				Cterm		S glycoprotein	43740568		The S glycoprotein is the major target for neutralizing antibodies elicited by natural infection and by vaccines.
32217362	4	57	gly	have	614:617	arg1	κ-casein glycomacropeptide AND several O-glycans	lactophorin		glycomacropeptide	several O-glycans	PUBTATOR		lactophorin	282430	glycomacropeptide	In particular, κ-casein glycomacropeptide and lactophorin, which have several O-glycans, are known to exist in whey protein.
32350116	0	1	part_of	domain	8:13	arg1	the fucosyltransferase FUT8	FUT8		domain		PUBTATOR	Site	FUT8	2530	domain	The SH3 domain in the fucosyltransferase FUT8 controls FUT8 activity and localization and is essential for core fucosylation.
33691185	8	5	gly	residues	1432:1439	arg1	the monomer repeats			lysine residues	the monomer repeats					lysine residues	SELP-415K, a SELP analogue with 4 silk units, 15 elastin units, and one elastin unit with lysine residues in the monomer repeats, resulted in the highest rectal bioaccumulation.
34817202	13	12	gly	glycoprotein	2043:2054	arg1	The viral spike glycoprotein	The viral spike glycoprotein				PUBTATOR		spike glycoprotein	43740568		The viral spike glycoprotein is the main target of host neutralizing antibodies that help to control SARS-CoV-2 infection and are important for the protection provided by vaccines.
34294810	3	32	part_of	multi-species	461:473	arg1	multi-species oral biofilm composition	multi		multi-species oral biofilm composition		OGER	Site	multi		position,	Firstly, it was hypothesized that the modulatory effects of NADM are not limited to changes in multi-species oral biofilm composition, but also include effects on metabolism, virulence, and inflammatory potential.
32147344	5	19	part_of	PPS/rGO	910:916	arg1	The PPS/rGO composition	PPS		The PPS/rGO composition		OGER	Site	PPS	Q9BT40	position	The PPS/rGO composition of 90: 10 (w/w) was selected because of having the highest biocompatibility and utilized in chitosan hydrogel.
34817202	5	59	gly	glycoprotein	794:805	arg1	a wild-type SARS-CoV-2 S glycoprotein trimer	a wild-type SARS-CoV-2 S glycoprotein trimer				PUBTATOR		S glycoprotein	43740568		We used a fucose-selective lectin to purify the Golgi-modified fraction of a wild-type SARS-CoV-2 S glycoprotein trimer and determined its glycosylation and disulfide bond profile.
32959246	1	0	gly	glycoproteins	193:205	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			The outermost surface of bacterial pathogens consists primarily of complex carbohydrate structures-polysaccharides, glycolipids, and glycoproteins.
34802756	6	60	part_of	CGA	1185:1187	arg1	accessible surface active sites	CGA		accessible surface active sites		PUBTATOR	Site	CGA	1113	sites	The size, charge, and chemical structure of organic dyes along with textural features and accessible surface active sites of CGA governed the adsorption process.
34578474	7	1	gly	glycopeptides	1453:1465	arg2	sialylated glycopeptides			sialylated glycopeptides						glycopeptides	The glycoproteomics atlas also revealed the differential pattern of sialylated glycopeptides between HBV and HCC groups.
34578474	7	50	gly	sialylated	1442:1451	arg1	sialylated glycopeptides			sialylated glycopeptides						glycopeptides	The glycoproteomics atlas also revealed the differential pattern of sialylated glycopeptides between HBV and HCC groups.
34076655	5	54	part_of	containing	880:889	arg1	The complementary association peptide AND the bioactive domain	The complementary association peptide		the bioactive domain						domain	The complementary association peptide (A-peptide), containing the bioactive domain, forms a heterodimeric coiled coil complex with the T-peptide.
34817202	12	98	gly	glycoprotein	1993:2004	arg1	its spike glycoprotein	its spike glycoprotein				PUBTATOR		spike glycoprotein	43740568		IMPORTANCE The SARS-CoV-2 coronavirus, which causes COVID-19, uses its spike glycoprotein to enter host cells.
34578474	8	40	gly	glycoprotein	1616:1627	arg1	glycoprotein biomarkers	glycoprotein biomarkers				Fterm		glycoprotein			The ZIC-cHILIC@MNPs could be a generic tool for advancing the glycoproteome analysis, and contribute to the screening of glycoprotein biomarkers.
33455363	6	16	part_of	HAP/κ-CA-MA-CAS/DOX	1056:1074	arg1	the HAP/κ-CA-MA-CAS/DOX composite	HAP		the HAP/κ-CA-MA-CAS/DOX composite		OGER	Site	HAP	P10826	composite	Overall, the studies demonstrate that the HAP/κ-CA-MA-CAS/DOX composite enhances the biocompatible and cell-stimulating biointerface of Ti metallic implants.
33925509	4	46	gly	CDM	779:781	arg1	glucose	CDM			glucose	OGER		CDM	Q05682		Increased production of the capsule precursor UDP-glucose has been identified by 31P-NMR in CDM with glucose.
32612952	8	72	gly	GlcNAc	1197:1202	arg1	EGFR	EGFR			GlcNAc	PUBTATOR		EGFR	1956		Among the differentially expressed glycoproteins, levels of bisecting GlcNAc on EGFR were significantly decreased in breast cancer cells, confirmed by immunostaining and immunoprecipitation.
32612952	8	78	gly	glycoproteins	1162:1174	arg1	the differentially expressed glycoproteins	the differentially expressed glycoproteins				Fterm		glycoproteins			Among the differentially expressed glycoproteins, levels of bisecting GlcNAc on EGFR were significantly decreased in breast cancer cells, confirmed by immunostaining and immunoprecipitation.
32708063	1	8	part_of	lipoproteins	263:274	arg1	high-density lipoproteins (HDL) lipid composition	lipoproteins		high-density lipoproteins (HDL) lipid composition		Fterm	Site	lipoproteins		position	Previous studies demonstrated that pomegranate, which is a source of several bioactive molecules, induces modifications of high-density lipoproteins (HDL) lipid composition and functionality.
33815445	9	80	gly	glycoproteins	1833:1845	arg1	tailor-made helminth N-glycans	glycoproteins			tailor-made helminth N-glycans	Fterm		glycoproteins			Effective knockout of these enzymes could allow the production of therapeutically relevant glycoproteins with tailor-made helminth N-glycans in plants.
33529630	10	12	gly	used	1466:1469	arg2	This composite			This composite						composite	This composite can therefore be used to fabricate high-performance TES systems with negligible supercooling and improved thermal properties.
34200763	2	26	part_of	Chs	484:486	arg1	an ethylcellulose (EC)/chitosan (Chs) nanocomposite	Chs		an ethylcellulose (EC)/chitosan (Chs) nanocomposite		OGER	Site	Chs	Q99698	nanocomposite	Here we report the efficacy of laser-light-irradiated 5,10,15,20-tetrakis(m-hydroxyphenyl)porphyrin (mTHPP) loaded onto an ethylcellulose (EC)/chitosan (Chs) nanocomposite in eradicating multi-drug resistant Pseudomonas aeruginosa, Staphylococcus aureus, and Candida albicans.
34200763	2	53	part_of	nanocomposite	489:501	arg1	eradicating multi-drug	multi		nanocomposite		OGER	Site	multi		nanocomposite	Here we report the efficacy of laser-light-irradiated 5,10,15,20-tetrakis(m-hydroxyphenyl)porphyrin (mTHPP) loaded onto an ethylcellulose (EC)/chitosan (Chs) nanocomposite in eradicating multi-drug resistant Pseudomonas aeruginosa, Staphylococcus aureus, and Candida albicans.
34232652	8	56	part_of	gMOS	1217:1220	arg1	(variations in) gMOS composition	gMOS		(variations in) gMOS composition		Cterm	Site	gMOS	P00540	position	The results significantly contribute to the current understanding of (variations in) gMOS composition.
34817202	15	56	gly	glycoprotein	2487:2498	arg1	the glycoprotein surface	the glycoprotein surface				Fterm		glycoprotein			Here, we describe the disulfide bonds that assist the SARS-CoV-2 spike glycoprotein to assume the correct shape and the composition of the sugar moieties on the glycoprotein surface.
34817202	15	74	gly	glycoprotein	2397:2408	arg1	the SARS-CoV-2 spike glycoprotein	the SARS-CoV-2 spike glycoprotein				PUBTATOR		spike glycoprotein	43740568		Here, we describe the disulfide bonds that assist the SARS-CoV-2 spike glycoprotein to assume the correct shape and the composition of the sugar moieties on the glycoprotein surface.
32217362	3	67	gly	glycoproteins	449:461	arg1	many glycoproteins	many glycoproteins				Fterm		glycoproteins			The protein composition of bovine milk is well-studied, and many glycoproteins carrying N-glycans and O-glycans have been found in commercial whey protein products.
32217362	3	4	gly	carrying	463:470	arg1	many glycoproteins AND O-glycans	many glycoproteins			O-glycans	Fterm		glycoproteins			The protein composition of bovine milk is well-studied, and many glycoproteins carrying N-glycans and O-glycans have been found in commercial whey protein products.
32217362	3	4	gly	carrying	463:470	arg1	many glycoproteins AND N-glycans	many glycoproteins			N-glycans	Fterm		glycoproteins			The protein composition of bovine milk is well-studied, and many glycoproteins carrying N-glycans and O-glycans have been found in commercial whey protein products.
34677430	2	7	gly	used	462:465	arg2	Electrophoretic deposition			Electrophoretic deposition						position	Electrophoretic deposition (EPD) has several advantages, including its versatility, simplicity, and ability to coat substrates with complex shapes, and is used for the creation of antimicrobial or hydrophobic coatings on metallic biomaterials, among other applications.
33921906	4	75	part_of	SA/PVA/E	843:850	arg1	The compositions	PVA		The compositions		OGER	Site	PVA	P32926	positions	The compositions of SA/PVA/E.
34515629	8	23	part_of	strain	819:824	arg1	C16 	strain		C16 		Fterm	SpecificSite	strain		C16 	The major cellular fatty acids of the strain were C16 : 1 ω7c dimethylacetal (DMA), C16 : 0 DMA and C18 : 1 ω7c DMA.
32217362	2	48	gly	O-glycopeptides	367:381	arg2	O-glycopeptides			O-glycopeptides						O-glycopeptides	Whey protein products are used as a human dietary supplement and in animal feed and are a readily available resource for the preparation of O-glycopeptides.
32679321	0	23	part_of	elastin-like	15:26	arg1	Alginate/human elastin-like polypeptide	elastin		Alginate/human elastin-like polypeptide		PUBTATOR	Site	elastin	2006	polypeptide	Alginate/human elastin-like polypeptide composite films with antioxidant properties for potential wound healing application.
33848549	3	10	gly	utilized	395:402	arg2	The resulting composite			The resulting composite						composite	The resulting composite was characterized and utilized as a catalyst for degradation of methylene blue both in dark condition and under visible light irradiation.
34087770	9	52	part_of	PVA/SOF	1658:1664	arg1	PVA/SOF hybrid nanocomposites	PVA		PVA/SOF hybrid nanocomposites		OGER	Site	PVA	P32926	nanocomposites	From the results, we suggest Cs/SOF and PVA/SOF hybrid nanocomposites have spectroscopic results that make them promising candidate drugs, but need to the clinical trials.
31904979	2	47	part_of	CNC	336:338	arg1	the CNC deposition	CNC		the CNC deposition		PUBTATOR	Site	CNC	5573	position	Quartz crystal microbalance with dissipation monitoring (QCM-D) was used to probe the bilayer formation and to show for the first time the CNC deposition onto the SLB.
32248230	8	2	gly	sialylated	1548:1557	arg1	sialylated and/or fucosylated HMOs	sialylated and/or fucosylated HMOs				OGER		HMOs	P00540		Our ultimate goal is to create a simple, high-throughput method, which can be used for full characterization of sialylated and/or fucosylated HMOs.
32248230	8	75	gly	fucosylated	1566:1576	arg1	sialylated and/or fucosylated HMOs	sialylated and/or fucosylated HMOs				OGER		HMOs	P00540		Our ultimate goal is to create a simple, high-throughput method, which can be used for full characterization of sialylated and/or fucosylated HMOs.
33393184	4	13	part_of	glue	375:378	arg1	chitin-binding motifs	glue protein		chitin-binding motifs		PUBTATOR	Site	glue protein	39288	motifs	A glue protein group is identified as chitin-binding motifs by bioinformatic analysis.
33393184	4	19	part_of	protein	380:386	arg1	chitin-binding motifs	glue protein		chitin-binding motifs		PUBTATOR	Site	glue protein	39288	motifs	A glue protein group is identified as chitin-binding motifs by bioinformatic analysis.
34893233	2	14	part_of	CS-NAC/alginate/tilapia	304:326	arg1	CS-NAC/alginate/tilapia collagen peptide	NAC		CS-NAC/alginate/tilapia collagen peptide		OGER	Site	NAC		peptide	In this paper, the gastric acid-responsive hydrogel of CS-NAC/alginate/tilapia collagen peptide (CS-NAC/ALG/TCP) was developed.
32217362	5	53	gly	O-glycopeptides	713:727	arg2	O-glycopeptides			O-glycopeptides						O-glycopeptides	Here, we report an isolation method of O-glycopeptides bearing disialyl core 1 type and core 2 type glycan moieties from commercially available whey protein products using proteose peptone extraction, enzymatic digestion (with trypsin or thermolysin), and sequential high-performance liquid chromatography purification.
34734702	7	46	part_of	PMETAC/CNC-COONa	1240:1255	arg1	the PMETAC/CNC-COONa nanocomposite	PMETAC/CNC		the PMETAC/CNC-COONa nanocomposite		PUBTATOR	Site	PMETAC/CNC	5573	nanocomposite	At this high CNC content, the reinforcement achieved in the PMETAC/CNC-COONa nanocomposite is much more pronounced than that observed for a reference nanocomposite made with unmodified CNCs (CNC-OH).
32562257	0	10	part_of	Impact	0:5	arg1	oil composition	Impact		oil composition		OGER	Site	Impact	Q9P2X3	position	Impact of exogenously applied trehalose on leaf biochemistry, achene yield and oil composition of sunflower under drought stress.
34817202	4	1	gly	glycoproteins	623:635	arg1	spike glycoproteins	spike glycoproteins				PUBTATOR		spike glycoproteins	43740568		We found that virus-like particles produced by coexpression of SARS-CoV-2 S, M, E, and N proteins contained spike glycoproteins that were extensively modified by complex carbohydrates.
34817202	4	123	gly	modified	659:666	arg3	spike glycoproteins AND complex carbohydrates	spike glycoproteins			complex carbohydrates	PUBTATOR		spike glycoproteins	43740568		We found that virus-like particles produced by coexpression of SARS-CoV-2 S, M, E, and N proteins contained spike glycoproteins that were extensively modified by complex carbohydrates.
32972156	8	43	part_of	GPs	962:964	arg1	The composites	GPs		The composites		OGER	Site	GPs		composites	The composites of GPs with diplacone significantly decreased the activity of pro-inflammatory transcription factors nuclear factor &#954;B (NF-&#954;B) and activator protein 1 (AP-1).
34874163	8	31	part_of	DMBC/SPI	1194:1201	arg1	DMBC/SPI composites	DMBC/SPI		DMBC/SPI composites		OGER	Site	DMBC/SPI	P10645	composites	In addition, FT-IR spectroscopy, SEM, static contact angle measurements, mechanical property investigation, and cell experiments were also performed to characterize the properties of DMBC/SPI composites.
32240692	1	57	part_of	site	374:377	arg1	enzymes	enzymes		site		Fterm	Site	enzymes		site	Development of mobile composition of matter (MCM)-41 silica nanoparticles faces challenges, e.g. surface charge properties, antigen loading efficiency, protecting from enzymes and harsh GIT environment and effective release at target mucosal site.
34500709	14	15	gly	used	1886:1889	arg2	These composites			These composites						composites	These composites can be used for various industrial applications, including packaging.
33087105	0	15	part_of	PVA-based	19:27	arg1	PVA-based compositions	PVA		PVA-based compositions		OGER	Site	PVA	P32926	positions	Preparation and of PVA-based compositions with embedded silver, copper and zinc oxide nanoparticles and assessment of their antibacterial properties.
32248230	7	4	gly	sialylated	1419:1428	arg1	higher molecular weight sialylated HMOs	higher molecular weight sialylated HMOs				OGER		HMOs	P00540		Here we report an easily implemented method developed for the separation, characterization and relative quantitation of large arrays of HMOs, including higher molecular weight sialylated HMOs.
33063290	2	76	gly	Asn-linked	528:537	arg1	(Man)5(GlcNAc)2 Asn-linked glycans			Asn	(Man)5(GlcNAc)2 Asn-linked glycans					Asn	In this study, recombinant human lactoferrin carrying humanized glycosylation (rhLf-h-glycan) expressed in the yeast Pichia pastoris SuperMan5, which is genetically glycoengineered to efficiently produce functional humanized glycoproteins inclosing (Man)5(GlcNAc)2 Asn-linked glycans, was analyzed, inspecting its potential toxicity against cancer cells.
33063290	2	93	gly	glycoproteins	488:500	arg1	functional humanized glycoproteins	functional humanized glycoproteins				Fterm		glycoproteins			In this study, recombinant human lactoferrin carrying humanized glycosylation (rhLf-h-glycan) expressed in the yeast Pichia pastoris SuperMan5, which is genetically glycoengineered to efficiently produce functional humanized glycoproteins inclosing (Man)5(GlcNAc)2 Asn-linked glycans, was analyzed, inspecting its potential toxicity against cancer cells.
33063290	2	85	gly	carrying	308:315	arg1	recombinant human lactoferrin AND rhLf-h-glycan	recombinant human lactoferrin			rhLf-h-glycan	PUBTATOR		lactoferrin	280846		In this study, recombinant human lactoferrin carrying humanized glycosylation (rhLf-h-glycan) expressed in the yeast Pichia pastoris SuperMan5, which is genetically glycoengineered to efficiently produce functional humanized glycoproteins inclosing (Man)5(GlcNAc)2 Asn-linked glycans, was analyzed, inspecting its potential toxicity against cancer cells.
34216844	3	42	part_of	Ag-β-CD	440:446	arg1	the Ag-β-CD composite	-CD		the Ag-β-CD composite		PUBTATOR	Site	-CD	65057	composite	Morphological and spectral characterizations of the Ag-β-CD composite were carried out.
34076655	2	73	part_of	ECM	400:402	arg1	the biochemical composition	ECM		the biochemical composition		OGER	Site	ECM	Q13201	position	With the biochemical composition of the ECM constantly in flux, the development of platforms that allow for user-defined control of bioactivity is desired.
33774369	11	13	gly	N-acetylglucosamine	2074:2092	arg1	the tail region			the tail region	the tail region		Site			region	Compared with controls, SP treated samples displayed: 1) the appearance of bisected di-triantennary complex-type N-glycans (PHA-E), terminating with lactosamine, as well as an increase of O-glycans terminating with Tn and T antigens in both the acrosomal and tail regions; 2) an increase in glycans containing α2,6-linked sialic acid, N-acetylglucosamine, and αgalactose in the tail region.
33774369	11	76	gly	αgalactose	2099:2108	arg1	the tail region			the tail region	the tail region		Site			region	Compared with controls, SP treated samples displayed: 1) the appearance of bisected di-triantennary complex-type N-glycans (PHA-E), terminating with lactosamine, as well as an increase of O-glycans terminating with Tn and T antigens in both the acrosomal and tail regions; 2) an increase in glycans containing α2,6-linked sialic acid, N-acetylglucosamine, and αgalactose in the tail region.
34817202	8	118	gly	glycosylation	1345:1357	arg2	Three incompletely occupied sites			Three incompletely occupied sites						sites	Three incompletely occupied sites of O-linked glycosylation were detected.
32817943	6	27	part_of	trimer	850:855	arg1	the biochemically purified ectodomain	trimer		the biochemically purified ectodomain		Fterm	Site	trimer		ectodomain	It is structurally homologous to that obtained previously from the biochemically purified ectodomain of HCoV-NL63 S trimer, which displays a 3-fold symmetric trimer in a single conformation.
32070509	4	11	part_of	CNC	729:731	arg1	the Fe-Cu@CNC composite	Fe-Cu@CNC		the Fe-Cu@CNC composite		OGER	Site	Fe-Cu@CNC	P32418	composite	Meanwhile, the Fe-Cu@CNC composite showed quick Pb2+ ion removal, reaching a 70.76 % removal within 5 min, a total removal of 93.98 % after 1 h, and excellent reusability (retaining removal efficiency of 80.41 % after six cycles).
32070509	4	15	part_of	@	728:728	arg1	the Fe-Cu@CNC composite	Fe-Cu@CNC		the Fe-Cu@CNC composite		OGER	Site	Fe-Cu@CNC	P32418	composite	Meanwhile, the Fe-Cu@CNC composite showed quick Pb2+ ion removal, reaching a 70.76 % removal within 5 min, a total removal of 93.98 % after 1 h, and excellent reusability (retaining removal efficiency of 80.41 % after six cycles).
32070509	4	52	part_of	Fe-Cu	723:727	arg1	the Fe-Cu@CNC composite	Fe-Cu@CNC		the Fe-Cu@CNC composite		OGER	Site	Fe-Cu@CNC	P32418	composite	Meanwhile, the Fe-Cu@CNC composite showed quick Pb2+ ion removal, reaching a 70.76 % removal within 5 min, a total removal of 93.98 % after 1 h, and excellent reusability (retaining removal efficiency of 80.41 % after six cycles).