doc_id	sent_index	relation_id	relation	trigger	trigger_offset	arg_num	arg_base_np	arg_protein	arg_domain	arg_site	arg_sugar	PSource	SiteSource	NProtein	NID	SiteName	sent_text
34074422	5	50	gly	1737 N-glycosites	1083:1099	arg2	1737 N-glycosites			1737 N-glycosites						1737 N-glycosites	With control of spectrum-level FDR≤1%, 5515 intact N-glycopeptides were identified (1737 N-glycosites, 1705 peptide backbones and 1516 intact N-glycoproteins; 181 putative N-glycan linkages and 68 monosaccharide compositions).
34074422	5	53	gly	identified	1071:1080	arg1	1737 N-glycosites			1737 N-glycosites						1737 N-glycosites	With control of spectrum-level FDR≤1%, 5515 intact N-glycopeptides were identified (1737 N-glycosites, 1705 peptide backbones and 1516 intact N-glycoproteins; 181 putative N-glycan linkages and 68 monosaccharide compositions).
34074422	5	65	gly	N-glycoproteins	1141:1155	arg1	1516 intact N-glycoproteins	1516 intact N-glycoproteins				Fterm		N-glycoproteins			With control of spectrum-level FDR≤1%, 5515 intact N-glycopeptides were identified (1737 N-glycosites, 1705 peptide backbones and 1516 intact N-glycoproteins; 181 putative N-glycan linkages and 68 monosaccharide compositions).
34074422	5	95	gly	N-glycopeptides	1050:1064	arg2	5515 intact N-glycopeptides			5515 intact N-glycopeptides						N-glycopeptides	With control of spectrum-level FDR≤1%, 5515 intact N-glycopeptides were identified (1737 N-glycosites, 1705 peptide backbones and 1516 intact N-glycoproteins; 181 putative N-glycan linkages and 68 monosaccharide compositions).
34872779	2	36	gly	used	447:450	arg2	The chitosan composite			The chitosan composite						composite	The chitosan composite of the iron metal-organic framework (CS/MOF-235), MOF-235 and chitosan were used for the removal of methylene blue (MB) and methyl orange (MO) from aqueous solutions.
34973768	5	8	gly	sequence	784:791	arg1	the monosaccharide composition, sequence and linkage pattern				the monosaccharide composition, sequence and linkage pattern						Applying this combinatorial approach, the monosaccharide composition, sequence and linkage pattern of this novel polymer was determined via HPLC-MS, GC-MS and NMR.
32649905	6	20	gly	glycosylation	1202:1214	arg1	a receptor	a receptor				Fterm		receptor			The combined data show that in situ cell-surface fucosylation can be exploited to regulate a specific signaling pathway via endocytosis promoted by a fucose-binding protein, thereby linking glycosylation of a receptor with its intracellular signaling.
32607666	2	80	gly	Cal+	354:357	arg1	Calcofluor-binding polysaccharides	Cal			Calcofluor-binding polysaccharides	OGER		Cal	Q9HD26		Its major surface glycopolymers consist of lipopolysaccharides (LPS) and Calcofluor-binding polysaccharides (Cal+ phenotype).
31936588	8	64	gly	fucosylation	1215:1226	arg1	the N-glycan structures				the N-glycan structures						Combinations of both xylosylation and aGal and fucosylation and aGal were also found on the N-glycan structures.
32649905	0	9	gly	Fucosylation	8:19	arg1	the Wnt Co-receptor LRP6	the Wnt Co-receptor LRP6				PUBTATOR		LRP6	O75581		In Situ Fucosylation of the Wnt Co-receptor LRP6 Increases Its Endocytosis and Reduces Wnt/β-Catenin Signaling.
32649905	0	40	gly	LRP6	44:47	arg1	In Situ Fucosylation	LRP6			In Situ Fucosylation	PUBTATOR		LRP6	O75581		In Situ Fucosylation of the Wnt Co-receptor LRP6 Increases Its Endocytosis and Reduces Wnt/β-Catenin Signaling.
33058985	6	1	gly	A-6-5	979:983	arg1	the O-polysaccharide			A-6-5	the O-polysaccharide					A-6-5	Formation of a new coordination bond between uranyl and the O-polysaccharide from P. veronii A-6-5 was demonstrated using FTIR spectroscopy; it may affect uranyl migration in the groundwaters due to its immobilization on microbial biofilms.
33338254	8	71	gly	glycoproteins	1638:1650	arg1	the Ulva lactuca AGP-like glycoproteins	the Ulva lactuca AGP-like glycoproteins				Fterm		glycoproteins			The exceptional structure of the Ulva lactuca AGP-like glycoproteins implies a specialized adaptation to the marine environment and might bring new insight into the evolution of the plant cell wall.
33668637	5	49	gly	glycoprotein	1675:1686	arg1	glycoprotein composition	glycoprotein composition				Fterm		glycoprotein			Overall, dietary Slab51® induces morphological and region-specific changes in glycoprotein composition of guinea fowl intestine, promoting gut health.
34960836	5	1	gly	glycosylated	811:822	arg1	highly glycosylated glycoproteins	highly glycosylated glycoproteins				Fterm		glycoproteins			To do this, different aqueous fractions were extracted, analyzed by classical carbohydrate analysis methods (GC-FID/MS, colorimetric assay and elemental analysis), and purified by ion-exchange chromatography, as well as selective precipitation with a detecting agent for highly glycosylated glycoproteins.
34960836	5	13	gly	glycoproteins	824:836	arg1	highly glycosylated glycoproteins	highly glycosylated glycoproteins				Fterm		glycoproteins			To do this, different aqueous fractions were extracted, analyzed by classical carbohydrate analysis methods (GC-FID/MS, colorimetric assay and elemental analysis), and purified by ion-exchange chromatography, as well as selective precipitation with a detecting agent for highly glycosylated glycoproteins.
32408264	3	10	gly	used	669:672	arg2	lipid raft compositions			lipid raft compositions						positions	In this study, we demonstrate that effects from chitosans on Langmuir monolayers are considerably higher if lipid raft compositions (ternary mixtures of dipalmitoyl phosphatidyl choline (DPPC), sphingomyelin (SM) and cholesterol) are used.
34646811	5	23	gly	glycoproteins	971:983	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			An amine reactive slide is used to immobilize glycoproteins from a few microliters of spotted samples, followed by peptide N-glycosidase digestion.
32610141	5	2	gly	N-glycosylated	882:895	arg1	the N-glycosylated GRP94 variant	the N-glycosylated GRP94 variant				PUBTATOR		GRP94 variant	22027		We show in cells, human specimens, and mouse xenografts that proteome connectivity is restorable by inhibition of the N-glycosylated GRP94 variant.
33978738	5	4	gly	glycosylation	1443:1455	arg2	glycosylation sites			glycosylation sites						sites	The PDB Exchange MacroMolecular Crystallographic Information File data dictionary now supports (i) standardized atom nomenclature that conforms to International Union of Pure and Applied Chemistry-International Union of Biochemistry and Molecular Biology (IUPAC-IUBMB) recommendations for carbohydrates, (ii) uniform representation of branched entities for oligosaccharides, (iii) commonly used linear descriptors of carbohydrates developed by the glycoscience community and (iv) annotation of glycosylation sites in proteins.
34248864	7	34	gly	O-antigen	1400:1408	arg1	LPS core biosynthesis activity encoding genes	O-antigen			LPS core biosynthesis activity encoding genes	Cterm		O-antigen			The transcriptome analysis also indicated that A. muciniphila was less affected by the environmental changes and was able to sustain its abundance in the presence of B. thetaiotaomicron while increasing the expression of LPS core biosynthesis activity encoding genes (O-antigen ligase, Lipid A and Glycosyl transferases) as well as ABC transporters.
32649905	3	1	gly	-fucosylation	547:559	arg1	the Galβ(1-4)-GlcNAc sequences				GlcNAc						Using a combination of Chinese hamster ovary cell mutants with different fucosylation levels and cell-surface fucose editing (in situ fucosylation [ISF]), we report that α(1-3)-fucosylation of N-acetylglucosamine (GlcNAc) in the Galβ(1-4)-GlcNAc sequences of complex N-glycans modulates Wnt/β-catenin activity by regulating the endocytosis of low-density lipoprotein receptor-related protein 6 (LRP6).
32649905	3	1	gly	-fucosylation	547:559	arg1	the Galβ(1-4)-GlcNAc sequences				N-acetylglucosamine						Using a combination of Chinese hamster ovary cell mutants with different fucosylation levels and cell-surface fucose editing (in situ fucosylation [ISF]), we report that α(1-3)-fucosylation of N-acetylglucosamine (GlcNAc) in the Galβ(1-4)-GlcNAc sequences of complex N-glycans modulates Wnt/β-catenin activity by regulating the endocytosis of low-density lipoprotein receptor-related protein 6 (LRP6).
32649905	3	2	gly	-fucosylation	547:559	arg1	the Galβ(1-4)-GlcNAc sequences				the Galβ(1-4)-GlcNAc sequences						Using a combination of Chinese hamster ovary cell mutants with different fucosylation levels and cell-surface fucose editing (in situ fucosylation [ISF]), we report that α(1-3)-fucosylation of N-acetylglucosamine (GlcNAc) in the Galβ(1-4)-GlcNAc sequences of complex N-glycans modulates Wnt/β-catenin activity by regulating the endocytosis of low-density lipoprotein receptor-related protein 6 (LRP6).
34758705	8	58	gly	used	1286:1289	arg2	GO/CMC composites			GO/CMC composites						composites	Furthermore, GO/CMC composites can be used as a renewable and eco-friendly adsorbent for the removal of UDMH wastewater.
32399726	3	23	gly	glycopeptides	568:580	arg2	glycopeptides			glycopeptides						glycopeptides	Based on the multivalent hydrophilic interactions between glycan moieties on glycopeptides and amino groups and hydroxyl groups on chitosan, the glycopeptides were enriched and separated by pGC beads.
32399726	3	32	gly	moieties	556:563	arg1	glycopeptides			glycopeptides	glycopeptides		Site			glycopeptides	Based on the multivalent hydrophilic interactions between glycan moieties on glycopeptides and amino groups and hydroxyl groups on chitosan, the glycopeptides were enriched and separated by pGC beads.
32399726	3	55	gly	glycopeptides	636:648	arg2	the glycopeptides			the glycopeptides						glycopeptides	Based on the multivalent hydrophilic interactions between glycan moieties on glycopeptides and amino groups and hydroxyl groups on chitosan, the glycopeptides were enriched and separated by pGC beads.
33128033	0	63	gly	aglycosylated	42:54	arg1	aglycosylated antibody-lectin	aglycosylated antibody-lectin				Fterm		antibody-lectin			Aglycosylated antibody-producing mice for aglycosylated antibody-lectin coupled immunoassay for the quantification of tumor markers (ALIQUAT).
34649174	7	24	gly	resolution	841:850	arg1	the disaccharide region			the disaccharide region	the disaccharide region						Oligosaccharide resolution, especially in the disaccharide region, is significantly improved and can be routinely achieved.
34074422	8	42	gly	N-glycoproteins	1638:1652	arg1	these 153 intact N-glycoproteins	these 153 intact N-glycoproteins				Fterm		N-glycoproteins			For these 153 intact N-glycoproteins, the molecular functions and biological processes of were comprehensively discussed, and side-to-side comparison of differential expression results with other method were also made.
32399726	0	41	gly	glycopeptides	131:143	arg2	glycopeptides			glycopeptides						glycopeptides	Porous graphene oxide/chitosan beads with honeycomb-biomimetic microchannels as hydrophilic adsorbent for the selective capture of glycopeptides.
31936588	7	42	gly	1,6-difucosylations	1097:1115	arg1	the core mannose				the core mannose						These CCDs include xylosylation of the core mannose, 1,3-mono and 1,3- and 1,6-difucosylations of the basal GlcNac and mono- or diantennary aGal.
34070741	2	8	gly	sites	311:315	arg1	Vacant N-glycosylation sites			Vacant N-glycosylation sites						sites	Vacant N-glycosylation sites (N220 and N229) of Kv3, voltage-gated K+ channels of high-firing neurons, deeply perturb channel activity in neuroblastoma (NB) cells.
34070741	2	59	gly	N-glycosylation	295:309	arg1	Kv3, voltage-gated K+ channels	channels		sites		Fterm		channels		sites	Vacant N-glycosylation sites (N220 and N229) of Kv3, voltage-gated K+ channels of high-firing neurons, deeply perturb channel activity in neuroblastoma (NB) cells.
33551170	6	106	gly	glycosylation	1079:1091	arg1	the major whey proteins	the major whey proteins				Fterm		proteins			In the current study, we evaluated intercow differences and the effects of macronutrient supply on the N-linked glycosylation profiles of the major whey proteins in milk samples of Holstein-Friesian cows.
32921414	1	28	gly	glycoprotein	141:152	arg1	a highly O-glycosylated glycoprotein	a highly O-glycosylated glycoprotein				Fterm		glycoprotein			Podoplanin (PDPN) is a highly O-glycosylated glycoprotein that is utilized as a specific lymphatic endothelial marker under pathophysiological conditions.
32921414	1	28	gly	glycoprotein	141:152	arg1	Podoplanin	Podoplanin				PUBTATOR		Podoplanin	10630		Podoplanin (PDPN) is a highly O-glycosylated glycoprotein that is utilized as a specific lymphatic endothelial marker under pathophysiological conditions.
32921414	1	34	gly	O-glycosylated	126:139	arg1	a highly O-glycosylated glycoprotein	a highly O-glycosylated glycoprotein				Fterm		glycoprotein			Podoplanin (PDPN) is a highly O-glycosylated glycoprotein that is utilized as a specific lymphatic endothelial marker under pathophysiological conditions.
32921414	1	34	gly	O-glycosylated	126:139	arg1	Podoplanin	Podoplanin				PUBTATOR		Podoplanin	10630		Podoplanin (PDPN) is a highly O-glycosylated glycoprotein that is utilized as a specific lymphatic endothelial marker under pathophysiological conditions.
34408229	3	67	gly	sugars	439:444	arg1	The chemical composition			The chemical composition	The chemical composition		Site			position	The chemical composition of S. latifolium is rich in total sugars (41.08%) and uronic acids (47.4%); while, proteins, lipids and sulfates contents are 4.61, 1.13 and 0.09%, respectively.
34807566	0	81	gly	Heterogeneity	68:80	arg1	Complex Bacterial Lipopolysaccharides				Complex Bacterial Lipopolysaccharides						Nanoflow LC-MS Method Allowing In-Depth Characterization of Natural Heterogeneity of Complex Bacterial Lipopolysaccharides.
33604750	0	42	gly	G11	50:52	arg1	Exopolysaccharide	G11			Exopolysaccharide	OGER		G11	P49842		Exopolysaccharide of Anoxybacillus pushchinoensis G11 has antitumor and antibiofilm activities.
34436648	3	74	gly	glycoprotein	432:443	arg1	the glycoprotein AXC-MEC	the glycoprotein AXC-MEC				Fterm		glycoprotein			In this work, the glycoprotein AXC-MEC, composed of subunits of amylolytic, xylanolytic, and cellulolytic enzymes, was isolated from crude extracellular enzyme of the mesophilic anaerobic bacterium Clostridium manihotivorum CT4, grown on cassava pulp, using a milled cassava pulp column and Sephacryl S-500 gel filtration chromatography.
32781125	11	83	gly	used	1743:1746	arg2	the composite			the composite						composite	Furthermore, the composite was used for the removal of methylene blue (MB) from water.
32128391	4	12	gly	fucosylated	694:704	arg1	fucosylated glycans				fucosylated glycans						We confirmed in vitro that knockdown of IKZF1 decreases the expression of fucosyltransferase FUT8, resulting in increased levels of fucosylated glycans, and suggest that RUNX1 and RUNX3, together with SMARCB1, regulate expression of glycosyltransferase MGAT3.
32637953	5	50	gly	epitope	806:812	arg1	the spike S2 domain			the spike S2 domain	the spike S2 domain		Site			domain	A 3.1 Å resolution cryo-EM structure of the S protein ectodomain bound to glycan-dependent HIV-1 bnAb 2G12 revealed a quaternary glycan epitope on the spike S2 domain involving multiple protomers.
33463166	3	69	gly	utilized	420:427	arg2	Antimicrobial peptides			Antimicrobial peptides						peptides	Antimicrobial peptides (AMPs) have been utilized to address the limitations of antiseptics and antibiotics.
32657144	3	65	gly	contained	785:793	arg1	TSP-3a AND GlcA	TSP-3a			GlcA	OGER		TSP	P07996		TSP-3a (758.6 kDa) mainly contained Man, GalN, GlcA, Rha, Glc, Gal, Ara, and Fuc in a molar ratio of 0.26:0.24:0.19:1.80:0.45:12.56:1.09:0.21.
32657144	3	65	gly	contained	785:793	arg1	TSP-3a AND Fuc	TSP-3a			Fuc	OGER		TSP	P07996		TSP-3a (758.6 kDa) mainly contained Man, GalN, GlcA, Rha, Glc, Gal, Ara, and Fuc in a molar ratio of 0.26:0.24:0.19:1.80:0.45:12.56:1.09:0.21.
32657144	3	65	gly	contained	785:793	arg1	TSP-3a AND Ara	TSP-3a			Ara	OGER		TSP	P07996		TSP-3a (758.6 kDa) mainly contained Man, GalN, GlcA, Rha, Glc, Gal, Ara, and Fuc in a molar ratio of 0.26:0.24:0.19:1.80:0.45:12.56:1.09:0.21.
32657144	3	65	gly	contained	785:793	arg1	TSP-3a AND Man	TSP-3a			Man	OGER		TSP	P07996		TSP-3a (758.6 kDa) mainly contained Man, GalN, GlcA, Rha, Glc, Gal, Ara, and Fuc in a molar ratio of 0.26:0.24:0.19:1.80:0.45:12.56:1.09:0.21.
32657144	3	65	gly	contained	785:793	arg1	TSP-3a AND Rha	TSP-3a			Rha	OGER		TSP	P07996		TSP-3a (758.6 kDa) mainly contained Man, GalN, GlcA, Rha, Glc, Gal, Ara, and Fuc in a molar ratio of 0.26:0.24:0.19:1.80:0.45:12.56:1.09:0.21.
32657144	3	65	gly	contained	785:793	arg1	TSP-3a AND GalN	TSP-3a			GalN	OGER		TSP	P07996		TSP-3a (758.6 kDa) mainly contained Man, GalN, GlcA, Rha, Glc, Gal, Ara, and Fuc in a molar ratio of 0.26:0.24:0.19:1.80:0.45:12.56:1.09:0.21.
32657144	3	65	gly	contained	785:793	arg1	TSP-3a AND Glc	TSP-3a			Glc	OGER		TSP	P07996		TSP-3a (758.6 kDa) mainly contained Man, GalN, GlcA, Rha, Glc, Gal, Ara, and Fuc in a molar ratio of 0.26:0.24:0.19:1.80:0.45:12.56:1.09:0.21.
32349995	7	2	gly	fucosylated	962:972	arg1	fucosylated and fucosylated disialylated structures				fucosylated and fucosylated disialylated structures						Bisecting GlcNAc in fucosylated and fucosylated disialylated structures and monosialylation of fucosylated digalactosylated structures were associated with a faster decrease of eGFR.
32349995	7	17	gly	monosialylation	1018:1032	arg1	fucosylated digalactosylated structures				fucosylated digalactosylated structures						Bisecting GlcNAc in fucosylated and fucosylated disialylated structures and monosialylation of fucosylated digalactosylated structures were associated with a faster decrease of eGFR.
32349995	7	24	gly	fucosylated	978:988	arg1	fucosylated and fucosylated disialylated structures				fucosylated and fucosylated disialylated structures						Bisecting GlcNAc in fucosylated and fucosylated disialylated structures and monosialylation of fucosylated digalactosylated structures were associated with a faster decrease of eGFR.
32349995	7	35	gly	disialylated	990:1001	arg1	fucosylated and fucosylated disialylated structures				fucosylated and fucosylated disialylated structures						Bisecting GlcNAc in fucosylated and fucosylated disialylated structures and monosialylation of fucosylated digalactosylated structures were associated with a faster decrease of eGFR.
32349995	7	50	gly	fucosylated	1037:1047	arg1	fucosylated digalactosylated structures				fucosylated digalactosylated structures						Bisecting GlcNAc in fucosylated and fucosylated disialylated structures and monosialylation of fucosylated digalactosylated structures were associated with a faster decrease of eGFR.
32399726	8	3	gly	glycopeptides	1447:1459	arg2	capturing and identifying low-abundant glycopeptides			capturing and identifying low-abundant glycopeptides						glycopeptides	The pGC was successfully applied to capturing and identifying low-abundant glycopeptides from biological samples.
32518941	8	93	gly	glycopeptide	1240:1251	arg2	glycopeptide			glycopeptide						glycopeptide	MS/MS fragmentation clearly established the glycopeptide identities.
33013929	6	59	gly	O-glycosylation	1340:1354	arg2	3 O-glycosylation sites			3 O-glycosylation sites						sites	In addition, we detected 9 predicted N-glycosylation sites and 3 O-glycosylation sites unique to SARS-CoV-2, but no evidently observed variation of the glycan sites so far.
33013929	6	87	gly	N-glycosylation	1312:1326	arg2	predicted N-glycosylation sites			predicted N-glycosylation sites						sites	In addition, we detected 9 predicted N-glycosylation sites and 3 O-glycosylation sites unique to SARS-CoV-2, but no evidently observed variation of the glycan sites so far.
33338254	6	21	gly	glycosylation	1335:1347	arg1	the Ulva lactuca AGP-like glycoproteins	the Ulva lactuca AGP-like glycoproteins				Fterm		glycoproteins			While the amino acid analysis of the AGP-like glycoproteins purified by the β-d-glucosyl Yariv reagent showed a similarity between algal and land plant AGP-like glycoproteins, neutral saccharide analysis revealed unique glycosylation of the Ulva lactuca AGP-like glycoproteins.
33338254	6	32	gly	glycoproteins	1161:1173	arg1	the AGP-like glycoproteins	the AGP-like glycoproteins				Fterm		glycoproteins			While the amino acid analysis of the AGP-like glycoproteins purified by the β-d-glucosyl Yariv reagent showed a similarity between algal and land plant AGP-like glycoproteins, neutral saccharide analysis revealed unique glycosylation of the Ulva lactuca AGP-like glycoproteins.
33338254	6	50	gly	glycoproteins	1276:1288	arg1	plant AGP-like glycoproteins	plant AGP-like glycoproteins				Fterm		glycoproteins			While the amino acid analysis of the AGP-like glycoproteins purified by the β-d-glucosyl Yariv reagent showed a similarity between algal and land plant AGP-like glycoproteins, neutral saccharide analysis revealed unique glycosylation of the Ulva lactuca AGP-like glycoproteins.
33338254	6	58	gly	glycoproteins	1378:1390	arg1	the Ulva lactuca AGP-like glycoproteins	the Ulva lactuca AGP-like glycoproteins				Fterm		glycoproteins			While the amino acid analysis of the AGP-like glycoproteins purified by the β-d-glucosyl Yariv reagent showed a similarity between algal and land plant AGP-like glycoproteins, neutral saccharide analysis revealed unique glycosylation of the Ulva lactuca AGP-like glycoproteins.
33418875	7	27	gly	sialylated-fucosylated	1102:1123	arg1	biantennary neutral, sialylated but nonfucosylated, and sialylated-fucosylated structures				biantennary neutral, sialylated but nonfucosylated, and sialylated-fucosylated structures						Altered distribution of biantennary neutral, sialylated but nonfucosylated, and sialylated-fucosylated structures were found to be the most significant changes.
33418875	7	62	gly	sialylated	1067:1076	arg1	biantennary neutral, sialylated but nonfucosylated, and sialylated-fucosylated structures				biantennary neutral, sialylated but nonfucosylated, and sialylated-fucosylated structures						Altered distribution of biantennary neutral, sialylated but nonfucosylated, and sialylated-fucosylated structures were found to be the most significant changes.
31970866	9	83	gly	glycopeptides	1111:1123	arg2	88.15% glycopeptides			88.15% glycopeptides						glycopeptides	Boronic acid@fibrous cellulose is selective up to 1:250 for spiked horseradish peroxidase in bovine serum albumin digest, sensitive down to 0.1 femtomol and recovering 88.15% glycopeptides.
32475601	3	51	gly	contains	440:447	arg1	The chemical composition AND glucose			The chemical composition	glucose					position	The chemical composition of the extracted polysaccharide contains fructose and glucose with protein-free identified by gas chromatography-mass spectrometer (GC-MS) method.
32475601	3	51	gly	contains	440:447	arg1	The chemical composition AND fructose			The chemical composition	fructose					position	The chemical composition of the extracted polysaccharide contains fructose and glucose with protein-free identified by gas chromatography-mass spectrometer (GC-MS) method.
31970866	1	27	gly	glycoproteins	107:119	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			Enrichment of glycoproteins has been important because of their dynamicity and role in biological systems.
32399726	5	25	gly	N-glycosylated	1010:1023	arg1	152 N-glycosylated proteins	152 N-glycosylated proteins				Fterm		proteins			By combing pGC beads and nano LC-MS/MS analysis, a total of 325 N-glycosylated peptides corresponding to 152 N-glycosylated proteins were identified from 2 μL human serum.
32399726	5	49	gly	N-glycosylated	965:978	arg1	325 N-glycosylated peptides			325 N-glycosylated peptides						peptides	By combing pGC beads and nano LC-MS/MS analysis, a total of 325 N-glycosylated peptides corresponding to 152 N-glycosylated proteins were identified from 2 μL human serum.
34782210	6	4	gly	DP	984:985	arg1	galactooligosaccharides	DP 2-4			galactooligosaccharides	OGER		DP 2-4	Q14188		This approach is shown to work for the preparation of food-grade fructooligosaccharides of DP 3 and 4, galactooligosaccharides of DP 3 and 4, and xylooligosaccharides of DP 2-4.
34782210	6	4	gly	DP	984:985	arg1	xylooligosaccharides	DP 2-4			xylooligosaccharides	OGER		DP 2-4	Q14188		This approach is shown to work for the preparation of food-grade fructooligosaccharides of DP 3 and 4, galactooligosaccharides of DP 3 and 4, and xylooligosaccharides of DP 2-4.
34782210	6	4	gly	DP	984:985	arg1	food-grade fructooligosaccharides	DP 2-4			food-grade fructooligosaccharides	OGER		DP 2-4	Q14188		This approach is shown to work for the preparation of food-grade fructooligosaccharides of DP 3 and 4, galactooligosaccharides of DP 3 and 4, and xylooligosaccharides of DP 2-4.
34782210	6	8	gly	DP	905:906	arg1	galactooligosaccharides	DP 3 and 4			galactooligosaccharides	PUBTATOR		DP 3 and 4	324		This approach is shown to work for the preparation of food-grade fructooligosaccharides of DP 3 and 4, galactooligosaccharides of DP 3 and 4, and xylooligosaccharides of DP 2-4.
34782210	6	8	gly	DP	905:906	arg1	xylooligosaccharides	DP 3 and 4			xylooligosaccharides	PUBTATOR		DP 3 and 4	324		This approach is shown to work for the preparation of food-grade fructooligosaccharides of DP 3 and 4, galactooligosaccharides of DP 3 and 4, and xylooligosaccharides of DP 2-4.
34782210	6	8	gly	DP	905:906	arg1	food-grade fructooligosaccharides	DP 3 and 4			food-grade fructooligosaccharides	PUBTATOR		DP 3 and 4	324		This approach is shown to work for the preparation of food-grade fructooligosaccharides of DP 3 and 4, galactooligosaccharides of DP 3 and 4, and xylooligosaccharides of DP 2-4.
34782210	6	34	gly	DP	944:945	arg1	galactooligosaccharides	DP 3 and 4			galactooligosaccharides	PUBTATOR		DP 3 and 4	324		This approach is shown to work for the preparation of food-grade fructooligosaccharides of DP 3 and 4, galactooligosaccharides of DP 3 and 4, and xylooligosaccharides of DP 2-4.
34782210	6	34	gly	DP	944:945	arg1	xylooligosaccharides	DP 3 and 4			xylooligosaccharides	PUBTATOR		DP 3 and 4	324		This approach is shown to work for the preparation of food-grade fructooligosaccharides of DP 3 and 4, galactooligosaccharides of DP 3 and 4, and xylooligosaccharides of DP 2-4.
34782210	6	34	gly	DP	944:945	arg1	food-grade fructooligosaccharides	DP 3 and 4			food-grade fructooligosaccharides	PUBTATOR		DP 3 and 4	324		This approach is shown to work for the preparation of food-grade fructooligosaccharides of DP 3 and 4, galactooligosaccharides of DP 3 and 4, and xylooligosaccharides of DP 2-4.
34661088	3	20	gly	N-glycosylation	460:474	arg1	S1 protein	S1 protein				Cterm		S1 protein	Q15517		In this study, we investigated the effect of different N-glycosylation of S1 protein on its binding to ACE2.
35087313	6	40	gly	glycoproteins	845:857	arg1	Pharmaceutical glycoproteins	Pharmaceutical glycoproteins				Fterm		glycoproteins			Pharmaceutical glycoproteins with these characteristics would be valuable for cellular delivery through the MR, and safe for human therapy.
32511389	1	44	gly	fully-glycosylated	165:182	arg1	a fully-glycosylated full-length SARS-CoV-2 spike (S) protein	a fully-glycosylated full-length SARS-CoV-2 spike (S) protein				Fterm		protein			This technical study describes all-atom modeling and simulation of a fully-glycosylated full-length SARS-CoV-2 spike (S) protein in a viral membrane.
32511389	1	30	gly	protein	217:223	arg1	all-atom modeling and simulation	protein			all-atom modeling and simulation	Fterm		protein			This technical study describes all-atom modeling and simulation of a fully-glycosylated full-length SARS-CoV-2 spike (S) protein in a viral membrane.
31954790	3	15	gly	utilized	488:495	arg2	The synthesized sodium alginate cross-linked acrylic acid/graphite (NaA-cl-AAc/GP) hydrogel composite			The synthesized sodium alginate cross-linked acrylic acid/graphite (NaA-cl-AAc/GP) hydrogel composite						composite	The synthesized sodium alginate cross-linked acrylic acid/graphite (NaA-cl-AAc/GP) hydrogel composite was utilized in the removal of malachite green (MG) dye from aqueous solution using batch adsorption experiments.
31970866	2	64	gly	glycoproteins	209:221	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			Study of glycoproteins is complex because of the simultaneous glycosylation and deglycosylation inside the body.
32902634	0	15	gly	glycoproteins	64:76	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			Sparse isotope labeling for nuclear magnetic resonance (NMR) of glycoproteins using 13C-glucose.
34074422	7	19	gly	N-glycoproteins	1538:1552	arg1	153 intact N-glycoproteins	153 intact N-glycoproteins				Fterm		N-glycoproteins			With the three technical replicates and the criteria of fold change≥1.5 and p value<0.05, 380 DEGPs (corresponding to 153 intact N-glycoproteins) were found along with 293 down-regulated and 87 up-regulated.
32507236	6	0	gly	glycans	999:1005	arg1	Asn112			Asn112	Asn112		AminoAcid	AZGP1	563	Asn109 and Asn112	Our results revealed 10 glycan compositions for salivary AZGP1, including core fucosylated glycans on Asn128 and sialylated glycans on Asn109 and Asn112.
32507236	6	0	gly	glycans	999:1005	arg1	Asn109			Asn109	Asn109		AminoAcid	AZGP1	563	Asn109 and Asn112	Our results revealed 10 glycan compositions for salivary AZGP1, including core fucosylated glycans on Asn128 and sialylated glycans on Asn109 and Asn112.
32507236	6	0	gly	glycans	999:1005	arg1	Asn128			Asn128	Asn128		AminoAcid	AZGP1	563	Asn128	Our results revealed 10 glycan compositions for salivary AZGP1, including core fucosylated glycans on Asn128 and sialylated glycans on Asn109 and Asn112.
32507236	6	39	gly	glycans	1032:1038	arg1	Asn112			Asn112	Asn112		AminoAcid	AZGP1	563	Asn109 and Asn112	Our results revealed 10 glycan compositions for salivary AZGP1, including core fucosylated glycans on Asn128 and sialylated glycans on Asn109 and Asn112.
32507236	6	39	gly	glycans	1032:1038	arg1	Asn109			Asn109	Asn109		AminoAcid	AZGP1	563	Asn109 and Asn112	Our results revealed 10 glycan compositions for salivary AZGP1, including core fucosylated glycans on Asn128 and sialylated glycans on Asn109 and Asn112.
32507236	6	39	gly	glycans	1032:1038	arg1	Asn128			Asn128	Asn128		AminoAcid	AZGP1	563	Asn128	Our results revealed 10 glycan compositions for salivary AZGP1, including core fucosylated glycans on Asn128 and sialylated glycans on Asn109 and Asn112.
32507236	6	65	gly	sialylated	1021:1030	arg1	sialylated glycans				sialylated glycans						Our results revealed 10 glycan compositions for salivary AZGP1, including core fucosylated glycans on Asn128 and sialylated glycans on Asn109 and Asn112.
32507236	6	78	gly	fucosylated	987:997	arg1	core fucosylated glycans				core fucosylated glycans						Our results revealed 10 glycan compositions for salivary AZGP1, including core fucosylated glycans on Asn128 and sialylated glycans on Asn109 and Asn112.
33125939	2	4	gly	content	310:316	arg1	lignin	lignin			content	Fterm		lignin			Its chemical characterization revealed to have an interesting composition, with a high polysaccharides content and low content in lignin, which makes it particularly relevant for the biorefinery's biochemical platform.
32541028	7	1	gly	Tn-glycoproteins	1388:1403	arg1	multiple Tn-glycoproteins	multiple Tn-glycoproteins				Fterm		Tn-glycoproteins			Selection with a noncognate human antigen, Tn-MUC1, yielded scFv variants that were broadly reactive with multiple Tn-glycoproteins.
32804173	7	4	gly	derived	1069:1075	arg1	dextrin AND the glucose units	dextrin			the glucose units	Fterm		dextrin			GUI values for glycan compositions were calculated with respect to the glucose units derived from dextrin, which was employed as an elution standard.
33125195	11	49	gly	used	1848:1851	arg2	starch-clay biocomposites			starch-clay biocomposites						biocomposites	CONCLUSIONS The study showed that starch-clay biocomposites could be used in the controlled release of tramadol.
32478036	3	34	gly	glycopeptides	802:814	arg2	structure-defined homogeneous N-linked glycopeptides			structure-defined homogeneous N-linked glycopeptides						glycopeptides	This glycosylation strategy is highly compatible with the free carboxylic acids and hydroxyl groups of peptides and carbohydrates, and readily available for the assembly of structure-defined homogeneous N-linked glycopeptides, such as segments derived from glycoprotein EPO and IL-5.
32478036	3	36	gly	glycoprotein	847:858	arg1	glycoprotein EPO	glycoprotein EPO				Fterm		glycoprotein			This glycosylation strategy is highly compatible with the free carboxylic acids and hydroxyl groups of peptides and carbohydrates, and readily available for the assembly of structure-defined homogeneous N-linked glycopeptides, such as segments derived from glycoprotein EPO and IL-5.
32478036	3	44	gly	peptides	693:700	arg1	carbohydrates			peptides	carbohydrates					peptides	This glycosylation strategy is highly compatible with the free carboxylic acids and hydroxyl groups of peptides and carbohydrates, and readily available for the assembly of structure-defined homogeneous N-linked glycopeptides, such as segments derived from glycoprotein EPO and IL-5.
31915902	11	27	gly	N-glycoforms	1608:1619	arg1	IgG N-glycoforms	IgG N-glycoforms				Cterm		IgG			• BSA's skewing of IgG N-glycoforms should be considered in IgG production.
32306780	7	77	gly	horses	1679:1684	arg1	r2 = 0.85			r2 = 0.85						r2 	SF and serum proteoglycan-4 concentrations were correlated in normal horses (r2 = 0.85, p < 0.05), but not in clinical groups.
32070555	2	21	gly	used	367:370	arg2	Compositional			Compositional						position	Compositional and FTIR analysis were initially used to confirm the removal of impurities.
34925283	8	65	gly	N-glycosylation	1342:1356	arg1	Hbt	Hbt				OGER		Hbt	Q9Y6M7		Moreover, this study demonstrated how compromised N-glycosylation affects various facets of Hbt.
31915902	7	19	gly	N-glycoforms	1182:1193	arg1	IgG N-glycoforms	IgG N-glycoforms				Cterm		IgG			Together, our finding suggests that BSA increases the complexity of IgG N-glycoforms, thus raising the difficulty in maintaining glycoforms consistency during antibody production.
33445487	9	70	gly	glycosylation	1091:1103	arg2	most sites			sites						sites	However, while glycosylation at most sites was dispensable for gB expression and fusogenicity, inactivation of N154 and N700 affected gB processing by furin cleavage and surface localization.
31970866	3	44	gly	glycopeptides	343:355	arg2	glycopeptides			glycopeptides						glycopeptides	Often employed affinities for glycopeptides are hydrazide, boronic acid, or physiosorbed lectin on support materials.
32942073	2	11	gly	fucosylated	266:276	arg1	fucosylated glycosaminoglycan				fucosylated glycosaminoglycan						A depolymerized fraction of fucosylated glycosaminoglycan from sea cucumber Holothuria fuscopunctata, dHG-5 (Mw 5.2 kDa), showed potent and selective inhibition of iXase (IC50, 14 nM).
33256221	8	36	gly	fucosylated	1008:1018	arg1	The fucosylated and NeuAc-containing O-glycans				The fucosylated and NeuAc-containing O-glycans						The fucosylated and NeuAc-containing O-glycans were inversely proportional, with infected fish on the lower scale of NeuAc abundance and high on fucosylated structures.
33256221	8	47	gly	fucosylated	1149:1159	arg1	fucosylated structures				fucosylated structures						The fucosylated and NeuAc-containing O-glycans were inversely proportional, with infected fish on the lower scale of NeuAc abundance and high on fucosylated structures.
34074422	4	22	gly	N-glycopeptides	916:930	arg2	differentially expressed intact N-glycopeptides			differentially expressed intact N-glycopeptides						N-glycopeptides	To investigate the differentially expressed N-glycosylation in adriamycin-resistant breast cancer stem cells MCF-7/ADR CSCs (relative to MCF-7 CSCs) and find the putative biomarkers, 1:1 paired ZIC-HILIC-enriched and stable isotopic diethyl labelled (SIDE) intact N-glycopeptides from MCF-7/ADR CSCs and MCF-7 CSCs were analyzed with C18-RPLC-ESI-MS/MS (HCD with stepped NCE); differentially expressed intact N-glycopeptides (DEGPs) were identified and quantified via search engine GPSeeker.
34074422	4	73	gly	N-glycopeptides	771:785	arg2	1:1 paired ZIC-HILIC-enriched and stable isotopic diethyl labelled (SIDE) intact N-glycopeptides			1:1 paired ZIC-HILIC-enriched and stable isotopic diethyl labelled (SIDE) intact N-glycopeptides						N-glycopeptides	To investigate the differentially expressed N-glycosylation in adriamycin-resistant breast cancer stem cells MCF-7/ADR CSCs (relative to MCF-7 CSCs) and find the putative biomarkers, 1:1 paired ZIC-HILIC-enriched and stable isotopic diethyl labelled (SIDE) intact N-glycopeptides from MCF-7/ADR CSCs and MCF-7 CSCs were analyzed with C18-RPLC-ESI-MS/MS (HCD with stepped NCE); differentially expressed intact N-glycopeptides (DEGPs) were identified and quantified via search engine GPSeeker.
32172856	1	14	gly	Col/HA-Tyr	224:233	arg1	enzymatically-crosslinked Collagen/Tyramine hyaluronan derivative (Col/HA-Tyr) hydrogels			Tyr	enzymatically-crosslinked Collagen/Tyramine hyaluronan derivative (Col/HA-Tyr) hydrogels					Tyr	A platform of enzymatically-crosslinked Collagen/Tyramine hyaluronan derivative (Col/HA-Tyr) hydrogels with tunable compositions and gelation conditions was developed to evaluate the impact of the preparation conditions on their physical, chemical and biological properties.
32066333	6	67	gly	used	912:915	arg2	The synthesized Ag NPs-alginate composite			The synthesized Ag NPs-alginate composite						composite	The synthesized Ag NPs-alginate composite was further used to develop a paper-based sensor for the detection of H2O2.
33256221	9	1	gly	fucosylated	1177:1187	arg1	The fucosylated epitopes			The fucosylated epitopes						epitopes	The fucosylated epitopes were of three types: Fuc-HexNAc-R, Gal-[Fuc-]HexNAc-R and HexNAc-[Fuc-]HexNAc-R.
32128391	2	1	gly	glycosylation	268:280	arg1	IgG	IgG				PUBTATOR		IgG	16059		Aberrant glycosylation of IgG has been observed in many diseases, but little is understood about the underlying mechanisms.
32902634	5	54	gly	sequence	1009:1016	arg1	partially occupied N-glycan sites			sequence	partially occupied N-glycan sites					sequence	We demonstrate an ability to detect partially occupied N-glycan sites, sites less susceptible to processing by an endoglycosidase, and some unexpected truncation of the amino acid sequence.
31970866	0	73	gly	glycopeptides	78:90	arg2	glycopeptides			glycopeptides						glycopeptides	Boronic acid functionalized fibrous cellulose for the selective enrichment of glycopeptides.
33381142	1	15	gly	glycoproteins	152:164	arg1	Plant cell wall associated hydroxyproline-rich glycoproteins	Plant cell wall associated hydroxyproline-rich glycoproteins				Fterm		glycoproteins			Plant cell wall associated hydroxyproline-rich glycoproteins (HRGPs) are involved in several aspects of plant growth and development, including wood formation in trees.
34960836	7	56	gly	glycoproteins	1007:1019	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			Only low amounts of glycoproteins, as well as medium amounts of the characteristic apiogalacturonan were likely to be present, while xylan seemed to be the most abundant polysaccharide in most fractions.
34354534	1	16	gly	glycosylated	354:365	arg1	glycosylated proteins	glycosylated proteins				Fterm		proteins			α-L-Rhamnosidases (α-L-Rha-ases, EC 3.2.1.40) are glycosyl hydrolases (GHs) that hydrolyze a terminal α-linked L-rhamnose residue from a wide spectrum of substrates such as heteropolysaccharides, glycosylated proteins, and natural flavonoids.
34925283	3	13	gly	glycoprotein	620:631	arg1	S-layer glycoprotein	S-layer glycoprotein				Fterm		glycoprotein			Following deletion of each encoding gene, the impact on N-glycosylation of the S-layer glycoprotein and archaellins, major glycoproteins in this organism, was assessed by mass spectrometry.
34925283	3	25	gly	glycoproteins	656:668	arg1	major glycoproteins	major glycoproteins				Fterm		glycoproteins			Following deletion of each encoding gene, the impact on N-glycosylation of the S-layer glycoprotein and archaellins, major glycoproteins in this organism, was assessed by mass spectrometry.
32507236	2	30	gly	glycoprotein	405:416	arg1	a model glycoprotein	a model glycoprotein				Fterm		glycoprotein			AZGP1 is a potential biomarker for salivary diagnostics of lung cancer, which is used as a model glycoprotein in this study for method development.
33748076	9	75	gly	glycoproteins	1213:1225	arg1	The N-glycans	glycoproteins			The N-glycans	Fterm		glycoproteins			The N-glycans from DSA-enriched glycoproteins were released by PNGase F and further identified by MALDI-TOF/TOF-MS to obtain the precise structural information of the altered glycans.
32902634	6	38	gly	glycosylated	1302:1313	arg1	the many glycosylated proteins	the many glycosylated proteins				Fterm		proteins			The labeling of both the protein (through alanines) and the glycans in a single culture requiring no additional technical expertise past standard mammalian expression requirements is anticipated to have several applications, including structural and functional screening of the many glycosylated proteins important to human health.
33020657	1	44	gly	glycopeptides	163:175	arg2	intact glycopeptides			intact glycopeptides						glycopeptides	Recent advances in methods for enrichment and mass spectrometric analysis of intact glycopeptides have produced large-scale glycoproteomics datasets, but interpreting these data remains challenging.
33664475	2	23	gly	sialylated	203:212	arg1	sialylated human milk oligosaccharides	HMOs			sialylated human milk oligosaccharides	OGER		HMOs	P00540		While sialylated human milk oligosaccharides (HMOs) have been implicated in phenotypic programming, their selective role and underlying mechanisms remained elusive.
32719787	1	30	gly	glycoproteins	275:287	arg1	N-glycans	glycoproteins			N-glycans	Fterm		glycoproteins			Peptide-N 4-(N-acetyl-β-glucosaminyl) asparagine amidases (PNGases, N-glycanases, EC 3.5.1.52) are indispensable tools in releasing N-glycans from glycoproteins.
35164571	8	7	gly	precursors	1462:1471	arg1	the UDP-MurNAc-monopeptide	precursors			the UDP-MurNAc-monopeptide	Fterm		precursors			Through X-ray crystallographic and biochemical analyses, we demonstrate that YfiH is a hydrolase with a previously unknown activity specific for the UDP-MurNAc-monopeptide, one of the nucleotide precursors from the cytoplasmic steps of the PG biosynthesis pathway.
33223210	2	8	gly	peroxidase	544:553	arg1	polysaccharide	peroxidase			polysaccharide	Fterm		peroxidase			Therefore, the aim of this study was to investigate the mechanism by which AM fungi immobilize Pb within the cell wall by measuring the Pb content in the cell wall, the polysaccharide and the uronic acid contents of different cell wall fractions, and the activity of cell wall peroxidase.
31915902	4	77	gly	N-glycoforms	489:500	arg1	IgG N-glycoforms	IgG N-glycoforms				Cterm		IgG			Here, we studied the effects on IgG N-glycoforms of different components in hybridoma culture media, specifically compared bovine serum albumin (BSA) with other small molecules, using a matrix-assisted laser desorption/ionization quadrupole ion trap time-of-flight multistage mass spectrometry (MALDI-QIT-TOF MSn)-based approach.
33551170	4	37	gly	glycosylation	730:742	arg1	whey proteins	whey proteins				Fterm		proteins			It is therefore highly relevant to understand whether and how the glycosylation of whey proteins (and their functionality) can be modulated.
32511307	2	9	gly	glycoproteins	368:380	arg1	the nascent glycoproteins	the nascent glycoproteins				Fterm		glycoproteins			We also analyze structures for glycoforms representing those present in the nascent glycoproteins (prior to enzymatic modifications in the Golgi), as well as those that are commonly observed on antigens present in other viruses.
32541028	5	0	gly	Tn-OTS8-glycopeptide	971:990	arg2	the 237 Fab:Tn-OTS8-glycopeptide complex			the 237 Fab:Tn-OTS8-glycopeptide complex						Tn-OTS8-glycopeptide	Guided by the structure of the 237 Fab:Tn-OTS8-glycopeptide complex, here we conducted a deep mutational scan showing that residues flanking the Tn-glycan contributed significant binding energy to the interaction.
33551170	0	62	gly	glycosylation	23:35	arg1	glycosylation-dependent cell adhesion molecule 1 (GlyCAM-1) whey protein	glycosylation-dependent cell adhesion molecule 1 (GlyCAM-1) whey protein				Fterm		protein			Variations in N-linked glycosylation of glycosylation-dependent cell adhesion molecule 1 (GlyCAM-1) whey protein: Intercow differences and dietary effects.
31970866	12	81	gly	glycoproteins	1526:1538	arg1	secreted glycoproteins	secreted glycoproteins				Fterm		glycoproteins			Enrichment from human serum recovers 18% extracellular and 72% secreted glycoproteins via bottom-up approach and online tools.
32511307	3	27	gly	glycoprotein	672:683	arg1	the S glycoprotein	the S glycoprotein				PUBTATOR		S glycoprotein	43740568		These models were subjected to molecular dynamics (MD) simulation to determine the extent to which glycan microheterogeneity impacts the antigenicity of the S glycoprotein.
33551170	7	26	gly	pool	1215:1218	arg1	milk protein	milk protein			pool	PUBTATOR		milk protein	281099		Overall, approximately 60% of the N-glycan pool in milk protein was sialylated, or fucosylated, or both; GlyCAM-1 contributed approximately 78% of the total number of glycans in the overall whey protein N-linked glycan pool.
33551170	7	66	gly	sialylated	1240:1249	arg1	the N-glycan pool				the N-glycan pool						Overall, approximately 60% of the N-glycan pool in milk protein was sialylated, or fucosylated, or both; GlyCAM-1 contributed approximately 78% of the total number of glycans in the overall whey protein N-linked glycan pool.
33551170	7	76	gly	protein	1228:1234	arg1	the N-glycan pool	milk protein			the N-glycan pool	PUBTATOR		milk protein	281099		Overall, approximately 60% of the N-glycan pool in milk protein was sialylated, or fucosylated, or both; GlyCAM-1 contributed approximately 78% of the total number of glycans in the overall whey protein N-linked glycan pool.
33551170	7	123	gly	fucosylated	1255:1265	arg1	the N-glycan pool				the N-glycan pool						Overall, approximately 60% of the N-glycan pool in milk protein was sialylated, or fucosylated, or both; GlyCAM-1 contributed approximately 78% of the total number of glycans in the overall whey protein N-linked glycan pool.
32511307	4	45	gly	glycoprotein	731:742	arg1	the S glycoprotein	the S glycoprotein				Cterm		S glycoprotein	43740568		Lastly, we have identified peptides in the S glycoprotein that are likely to be presented in human leukocyte antigen (HLA) complexes, and discuss the role of S protein glycosylation in potentially modulating the adaptive immune response to the SARS-CoV-2 virus or to a related vaccine.
32902634	3	56	gly	glycosylated	451:462	arg1	glycosylated proteins	glycosylated proteins				Fterm		proteins			However, it can be expensive for glycosylated proteins expressed in mammalian culture where more costly isotopically enriched amino acids are usually used.
32810535	8	12	gly	FGF2	1165:1168	arg1	GalNAc 4S	FGF2			GalNAc 4S	OGER		FGF2	P09038		GalNAc 4S of YG-1 could be the binding sites of FGF2 and FGFR.
31896257	5	32	gly	composition	1013:1023	arg1	the purified cell wall polysaccharides			position	the purified cell wall polysaccharides					position	However, the intact cell sample had a shape more similar to microbiota composition with the purified cell wall polysaccharides, rather than the damaged cells.
32355733	8	29	gly	P-glycoprotein	1179:1192	arg1	P-glycoprotein	P-glycoprotein				PUBTATOR		P-glycoprotein	5243		Cisplatin-resistant variants were confirmed by higher half maximal inhibitory concentration (IC50) values and increased P-glycoprotein (ABCB1, P-gp) expression compared to A2780 cells.
32541028	2	73	gly	O-glycoprotein	368:381	arg1	aberrant O-glycoprotein epitopes	aberrant O-glycoprotein epitopes				Fterm		O-glycoprotein			It has been difficult to identify appropriate targets in nonhematopoietic tumors, but one class of antigens that have shown promise is aberrant O-glycoprotein epitopes.
33389854	0	18	gly	Tail	7:10	arg1	Crude Exopolysaccharides				Crude Exopolysaccharides						Turkey Tail Medicinal Mushroom, Trametes versicolor (Agaricomycetes), Crude Exopolysaccharides with Antioxidative Activity.
32478036	1	4	gly	glycopeptides	183:195	arg2	homogeneous complex N-linked glycopeptides			homogeneous complex N-linked glycopeptides						glycopeptides	Chemical synthesis is an attractive approach allows for the assembly of homogeneous complex N-linked glycopeptides and glycoproteins, but the limited coupling efficiency between glycans and peptides hampered the synthesis and research in the related field.
32478036	1	8	gly	glycoproteins	201:213	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			Chemical synthesis is an attractive approach allows for the assembly of homogeneous complex N-linked glycopeptides and glycoproteins, but the limited coupling efficiency between glycans and peptides hampered the synthesis and research in the related field.
32478036	2	15	gly	glycopeptide	410:421	arg2	N-linked glycopeptide			N-linked glycopeptide						glycopeptide	Herein we developed an alternative glycosylation to construct N-linked glycopeptide via efficient selenoester-assisted aminolysis, which employs the peptidyl ω-asparagine selenoester and unprotected glycosylamine to perform rapid amide-bond ligation.
35087313	1	10	gly	glycoproteins	191:203	arg1	pharmaceutical glycoproteins	pharmaceutical glycoproteins				Fterm		glycoproteins			N-Glycosylation is essential for protein stability, activity and characteristics, and is often needed to deliver pharmaceutical glycoproteins to target cells.
33006278	10	33	gly	moieties	1705:1712	arg1	the heparosan chain	chain			moieties	OGER		chain	Q9Y251		This analytical tool could be applied towards heparosan chain mapping and analysis of unnatural sugar moieties in the heparosan chain.
31970866	11	11	gly	glycopeptides	1304:1316	arg2	18 glycopeptides			18 glycopeptides						glycopeptides	Total of 18 glycopeptides are enriched from immunoglobulin digest showing ability of boronic acid@fibrous cellulose to enrich glycoproteins from multiglycoforms.
31970866	11	34	gly	glycoproteins	1418:1430	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			Total of 18 glycopeptides are enriched from immunoglobulin digest showing ability of boronic acid@fibrous cellulose to enrich glycoproteins from multiglycoforms.
34646811	2	36	gly	glycoproteins	345:357	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			These fluids contain an abundant number of glycoproteins and extracellular vesicles secreted by the prostate gland, and the ability to detect changes in their N-glycans composition as a reflection of disease state represents potential new biomarker candidates.
32128391	0	35	gly	Glycosylation	0:12	arg1	immunoglobulin G	immunoglobulin G				Cterm		immunoglobulin G	16059		Glycosylation of immunoglobulin G is regulated by a large network of genes pleiotropic with inflammatory diseases.
34768961	0	34	gly	Heterogeneity	82:94	arg1	Glycosaminoglycans				Glycosaminoglycans						The Influences of Sulphation, Salt Type, and Salt Concentration on the Structural Heterogeneity of Glycosaminoglycans.
32027903	11	39	gly	used	1527:1530	arg2	cellulose/clay composite			cellulose/clay composite						composite	The results showed that cellulose/clay composite are efficient for the removal dyes and could possibly be used for the treatment of textile effluents.
34925283	2	51	gly	glycoproteins	488:500	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			Toward expanding the number of delineated archaeal N-glycosylation pathways, the involvement of the putative Halobacterium salinarum glycosyltransferases VNG1067G, VNG1066C, and VNG1062G in the assembly of an N-linked tetrasaccharide decorating glycoproteins in this species was addressed.
33338254	4	17	gly	glycoproteins	735:747	arg1	AGP-like glycoproteins	AGP-like glycoproteins				Fterm		glycoproteins			This article presents the first experimental confirmation of AGP-like glycoproteins in Ulva species and provides a simple extraction protocol of Ulva lactuca AGP-like glycoproteins, their partial characterization and unique comparison to scarcely described Solanum lycopersicum AGPs.
33338254	4	35	gly	glycoproteins	832:844	arg1	Ulva lactuca AGP-like glycoproteins	Ulva lactuca AGP-like glycoproteins				Fterm		glycoproteins			This article presents the first experimental confirmation of AGP-like glycoproteins in Ulva species and provides a simple extraction protocol of Ulva lactuca AGP-like glycoproteins, their partial characterization and unique comparison to scarcely described Solanum lycopersicum AGPs.
33013929	7	3	gly	glycosylation	1577:1589	arg2	glycosylation sites			glycosylation sites						sites	Our findings provided an important snapshot of temporal and geographical distributions on SARS-CoV-2 S protein cell epitopes and glycosylation sites, which would be an essential basis for the selection of vaccine candidates.
33013929	7	3	gly	glycosylation	1577:1589	arg2	SARS-CoV-2 S protein cell epitopes			SARS-CoV-2 S protein cell epitopes						epitopes	Our findings provided an important snapshot of temporal and geographical distributions on SARS-CoV-2 S protein cell epitopes and glycosylation sites, which would be an essential basis for the selection of vaccine candidates.
34255124	0	13	gly	synthesis	50:58	arg1	Lactiplantibacillus plantarum VAL6			Lactiplantibacillus plantarum VAL6	Lactiplantibacillus plantarum VAL6		AminoAcid			VAL6	Expression of genes involved in exopolysaccharide synthesis in Lactiplantibacillus plantarum VAL6 under environmental stresses.
32473217	5	47	gly	TFP	1361:1363	arg1	monosaccharide composition	TFP			monosaccharide composition	OGER		TFP	Q9HCM9		High performance liquid chromatography, Fourier-transform infrared spectroscopy, Carbon-13 nuclear magnetic resonance, scanning electron microscopy, atomic force microscopy, and Congo red results indicated that the treatment could break down the polysaccharide chains, hinder the aggregation, and improve the conformation flexibility of the TFP molecules without changing the primary structure and monosaccharide composition of TFP.
32921414	0	7	gly	disialylated	60:71	arg1	a disialylated O-linked glycopeptide			a disialylated O-linked glycopeptide						glycopeptide	Crystal structure of an anti-podoplanin antibody bound to a disialylated O-linked glycopeptide.
32921414	0	41	gly	glycopeptide	82:93	arg2	a disialylated O-linked glycopeptide			a disialylated O-linked glycopeptide						glycopeptide	Crystal structure of an anti-podoplanin antibody bound to a disialylated O-linked glycopeptide.
33391325	2	68	gly	glycoproteins	159:171	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			Since the majority of them are glycoproteins, their N-glycosylation profiles are major determinants for their activity, structural properties and safety.
32902634	4	3	gly	glycosylated	798:809	arg1	the highly glycosylated protein	the highly glycosylated protein				Fterm		protein			We describe a simple, relatively inexpensive procedure in which standard commercial media is supplemented with 13C-enriched glucose to achieve labeling of all glycans plus all alanines of the N-terminal domain of the highly glycosylated protein, CEACAM1.
32902634	4	3	gly	glycosylated	798:809	arg1	CEACAM1	CEACAM1				PUBTATOR		CEACAM1	634		We describe a simple, relatively inexpensive procedure in which standard commercial media is supplemented with 13C-enriched glucose to achieve labeling of all glycans plus all alanines of the N-terminal domain of the highly glycosylated protein, CEACAM1.
34661088	4	58	gly	de-N-glycosylated	655:671	arg1	de-N-glycosylated S1 proteins	de-N-glycosylated S1 proteins				Cterm		de-N-glycosylated S1 proteins	Q15517		Using real-time surface plasmon resonance assay the negative effects were demonstrated by the considerable increase of binding affinities of de-N-glycosylated S1 proteins produced from three different expression systems including baculovirus-insect, Chinese hamster ovarian and two variants of human embryonic kidney 293 cells.
31961483	4	67	gly	fucosylated	710:720	arg1	fucosylated N-glycans				fucosylated N-glycans						In the present study, matrix-assisted laser desorption/ionization-time-of-flight-mass spectrometry (MALDI-TOF-MS) analysis revealed that the composition profiling of fucosylated N-glycans differed between high metastatic C8161 and low metastatic A375P cells.
32507236	3	12	gly	300 N-glycoproteins	557:575	arg1	300 N-glycoproteins	300 N-glycoproteins				Fterm		300 N-glycoproteins			We initially analyzed salivary N-glycoproteome by using lectin affinity chromatography and more than 300 N-glycoproteins were identified, including AZGP1.
32431565	8	29	gly	fucosylated	1530:1540	arg1	complex fucosylated N-linked glycans				complex fucosylated N-linked glycans						The utilization of this β-mannosylation was demonstrated by an efficient synthesis of the hexasaccharide core of complex fucosylated N-linked glycans.
35087313	2	32	gly	glycoproteins	316:328	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			A paucimannosidic structure, Man3GlcNAc2 (M3), has been reported to enable cellular uptake of glycoproteins through the mannose receptor (MR) in humans, and such uptake has been exploited for the treatment of certain diseases.
32507236	7	58	gly	AZGP1	1116:1120	arg1	the glycan structures	AZGP1			the glycan structures	PUBTATOR		AZGP1	563		We further compared the glycan structures of salivary AZGP1 from lung cancer group and control group.
34515908	9	52	gly	heparin	1409:1415	arg1	glycan composition	heparin			glycan composition	Fterm		heparin			The above results demonstrated that compared with the sulfate location and glycan composition of heparin, the content of sulfate was the most essential factor for the MB binding.
33125195	5	77	gly	used	1084:1087	arg2	The starch-clay composites			The starch-clay composites						composites	The starch-clay composites were characterized and used as direct compression excipients for the preparation of tramadol tablets.
33128033	2	74	gly	N-glycans	302:310	arg1	Fc region			Fc region	Fc region		Site			region	Because N-glycans in Fc region of antibodies show cross-reactivity with various lectins, high-quality aglycosylated antibodies are exceptionally important for immunoassay platform-based quantitative measurements.
32399726	1	1	gly	glycopeptides	356:368	arg2	glycopeptides			glycopeptides						glycopeptides	A porous hydrophilic affinity bead consisting of graphene oxide and chitosan (pGC) with the honeycomb-biomimetic microchannels has been synthesized and applied as hydrophilic adsorbent for selective capture of glycopeptides.
32804173	6	47	gly	glycoproteins	824:836	arg1	model glycoproteins fetuin and ribonuclease B (RNase B)	model glycoproteins fetuin and ribonuclease B (RNase B)				Fterm		glycoproteins			We evaluated this method with reduced and permethylated glycans derived from model glycoproteins fetuin and ribonuclease B (RNase B), and then implemented it to human blood serum to generate C18 and PGC column-based isomeric glycan libraries.
32804173	6	47	gly	glycoproteins	824:836	arg1	fetuin	fetuin				Fterm		fetuin			We evaluated this method with reduced and permethylated glycans derived from model glycoproteins fetuin and ribonuclease B (RNase B), and then implemented it to human blood serum to generate C18 and PGC column-based isomeric glycan libraries.
32804173	6	47	gly	glycoproteins	824:836	arg1	ribonuclease B	ribonuclease B				Cterm		ribonuclease B			We evaluated this method with reduced and permethylated glycans derived from model glycoproteins fetuin and ribonuclease B (RNase B), and then implemented it to human blood serum to generate C18 and PGC column-based isomeric glycan libraries.
33256116	3	53	gly	isolated	510:517	arg2	porcine heparin AND specifically glucuronic acids	porcine heparin			specifically glucuronic acids	Fterm		heparin			Uronic NRE (specifically glucuronic acids) have been isolated from porcine heparin, with GlcA-GlcNS,3S,6S identified as a porcine-specific NRE marker.
33674390	9	37	gly	C-Pro	1451:1455	arg1	the C-Pro N-glycan			Pro	the C-Pro N-glycan					Pro	Finally, we show that the C-Pro N-glycan is actually critical for the folding and secretion of even wild-type procollagen under ER stress conditions.
34074422	6	46	gly	N-glycopeptide	1244:1257	arg2	5515 intact N-glycopeptide IDs			5515 intact N-glycopeptide IDs						N-glycopeptide	Among 5515 intact N-glycopeptide IDs, 3864 were identified with glycoform score≥1, i.e., one or more structure-diagnostic fragment ions were observed to distinguish sequence isomers.
32541028	4	58	gly	Tn-glycopeptide	875:889	arg2	its cognate Tn-glycopeptide epitope			its cognate Tn-glycopeptide epitope						Tn-glycopeptide epitope	Previously, we used the scFv fragment of antibody 237 as a chimeric antigen receptor (CAR) to mediate recognition of mouse tumor cells that bear its cognate Tn-glycopeptide epitope in podoplanin, also called OTS8.
32518941	1	14	gly	coat	227:230	arg1	their spike glycoproteins	spike glycoproteins			coat	PUBTATOR		spike glycoproteins	43740568		Coronaviruses hijack human enzymes to assemble the sugar coat on their spike glycoproteins.
32518941	1	76	gly	glycoproteins	247:259	arg1	their spike glycoproteins	their spike glycoproteins				PUBTATOR		spike glycoproteins	43740568		Coronaviruses hijack human enzymes to assemble the sugar coat on their spike glycoproteins.
35087313	5	11	gly	glycoproteins	703:715	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			Arabidopsis alg3 cell culture produced glycoproteins with predominantly M3 and GlcNAc-terminal structures, while the amount of plant-specific N-glycans was very low.
34074422	0	38	gly	N-glycoprotein	9:22	arg1	N-glycoprotein	N-glycoprotein				Fterm		N-glycoprotein			Putative N-glycoprotein markers of MCF-7/ADR cancer stem cells from N-glycoproteomics characterization of the whole cell lysate.
34661088	0	55	gly	N-glycosylation	14:28	arg1	SARS-CoV-2 spike protein	SARS-CoV-2 spike protein				PUBTATOR		spike protein	43740568		The effect of N-glycosylation of SARS-CoV-2 spike protein on the virus interaction with the host cell ACE2 receptor.
32172856	7	20	gly	Col/HA-Tyr	1172:1181	arg1	Those Col/HA-Tyr hydrogels			Tyr	Those Col/HA-Tyr hydrogels					Tyr	Those Col/HA-Tyr hydrogels appear promising for novel tissue engineering applications following a biomimetic approach.
35164571	9	60	gly	PG	1662:1663	arg1	UDP-MurNAc-Ala	PG			UDP-MurNAc-Ala	Cterm		PG			YfiH selectively hydrolyzes UDP-MurNAc-Ser, an incorrect by-product of the biosynthesis reaction, to ensure that only the correct PG precursor, UDP-MurNAc-Ala, is incorporated.
33838822	5	21	gly	contained	792:800	arg1	MPS-1 AND glucose based sugar residues	MPS-1			glucose based sugar residues	OGER		However, MPS-1	P42677		However, MPS-1 contained glucose based sugar residues such as 3-Glcp and 4-Glcp which were not shown on MPS-2.
31908039	1	2	gly	glycoprotein	153:164	arg1	a glycoprotein	a glycoprotein				Fterm		glycoprotein			Fms-like tyrosine kinase 3 (FLT3) is a glycoprotein, that is a member of the class III receptor tyrosine kinase family.
33338254	5	5	gly	glycoproteins	1100:1112	arg1	AGP-like glycoproteins	AGP-like glycoproteins				Fterm		glycoproteins			The reactivity with primary anti-AGP antibodies as well as Yariv reagent showed a great variety between Ulva lactuca and Solanum lycopersicum AGP-like glycoproteins.
32719787	2	12	gly	glycoproteins	386:398	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			So far, only a limited number of PNGase candidates are available for the structural analysis of glycoproteins and their glycan moieties.
33020657	3	14	gly	glycopeptide	537:548	arg2	80% more glycopeptide spectrum matches			80% more glycopeptide spectrum matches						glycopeptide	Reanalysis of recent N-glycoproteomics data resulted in annotation of 80% more glycopeptide spectrum matches (glycoPSMs) than previously reported.
34354349	13	86	gly	used	2111:2114	arg2	the electrospun PVA NFs composites			the electrospun PVA NFs composites						composites	CONCLUSION The obtained results suggest that the electrospun PVA NFs composites containing 0.9% PE-CS-Au NPs can be used as antibacterial agents against antibiotic-resistant bacteria, and as suitable scaffolds for cell adhesion, growth and proliferation of fibroblast populations.
32928385	1	31	gly	glycoprotein	202:213	arg1	Recombinant human erythropoietin	Recombinant human erythropoietin				PUBTATOR		erythropoietin	2056		Recombinant human erythropoietin (rhEPO) is a glycoprotein that acts as the main hormone involved in regulating red blood cell production to treat anemia caused by chronic kidney disease or chemotherapy.
32928385	1	31	gly	glycoprotein	202:213	arg1	a glycoprotein	a glycoprotein				Fterm		glycoprotein			Recombinant human erythropoietin (rhEPO) is a glycoprotein that acts as the main hormone involved in regulating red blood cell production to treat anemia caused by chronic kidney disease or chemotherapy.
33978738	7	31	gly	glycoproteins	2007:2019	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			The uniform representation of carbohydrate molecules in the PDB described herein will facilitate broader usage of the resource by the glycoscience community and researchers studying glycoproteins.
32541028	3	4	gly	containing	575:584	arg1	cell surface proteins AND O-glycans	cell surface proteins			O-glycans	Fterm		proteins			It has long been known that dysregulated synthesis of O-linked (threonine or serine) sugars occurs in many cancers, and that this can lead to the expression of cell surface proteins containing O-glycans comprised of a single N-acetylgalactosamine (GalNAc, known as Tn antigen) rather than the normally extended carbohydrate.
32637953	0	1	gly	cluster	9:15	arg1	the SARS-CoV-2 spike ectodomain			the SARS-CoV-2 spike ectodomain	the SARS-CoV-2 spike ectodomain		Site			ectodomain	A glycan cluster on the SARS-CoV-2 spike ectodomain is recognized by Fab-dimerized glycan-reactive antibodies.
32637953	3	27	gly	glycosylated	449:460	arg1	The S protein	The S protein				OGER		S protein	Q15517		The S protein, like many other viral fusion proteins such as HIV-1 envelope (Env) and influenza hemagglutinin, is glycosylated with both complex and high mannose glycans.
32518941	0	41	gly	N-glycosites	21:32	arg2	22 N-glycosites			22 N-glycosites						N-glycosites	Identification of 22 N-glycosites on spike glycoprotein of SARS-CoV-2 and accessible surface glycopeptide motifs: Implications for vaccination and antibody therapeutics.
32518941	0	79	gly	glycopeptide	93:104	arg2	SARS-CoV-2 and accessible surface glycopeptide motifs			SARS-CoV-2 and accessible surface glycopeptide motifs						glycopeptide motifs	Identification of 22 N-glycosites on spike glycoprotein of SARS-CoV-2 and accessible surface glycopeptide motifs: Implications for vaccination and antibody therapeutics.
32518941	0	91	gly	glycoprotein	43:54	arg1	spike glycoprotein	spike glycoprotein				PUBTATOR		spike glycoprotein	43740568		Identification of 22 N-glycosites on spike glycoprotein of SARS-CoV-2 and accessible surface glycopeptide motifs: Implications for vaccination and antibody therapeutics.
33551170	11	72	gly	glycosylation	1917:1929	arg1	GlyCAM-1	GlyCAM-1				PUBTATOR		GlyCAM-1	282430		Overall, these data demonstrate that the glycosylation, and particularly fucosylation, of GlyCAM-1 was variable, although these shifts appear to be related more to individual cow variation than to nutrient supply.
33551170	12	96	gly	glycoprotein	2173:2184	arg1	a milk glycoprotein	a milk glycoprotein				Fterm		glycoprotein			To our knowledge, this is the first report of variation in glycosylation of a milk glycoprotein in mature, noncolostral milk.
33551170	12	102	gly	glycosylation	2149:2161	arg1	a milk glycoprotein	a milk glycoprotein				Fterm		glycoprotein			To our knowledge, this is the first report of variation in glycosylation of a milk glycoprotein in mature, noncolostral milk.
32511307	1	20	gly	glycoprotein	161:172	arg1	the spike (S) glycoprotein	the spike (S) glycoprotein				Fterm		glycoprotein			Here we have generated 3D structures of glycoforms of the spike (S) glycoprotein from SARS-CoV-2, based on reported 3D structures and glycomics data for the protein produced in HEK293 cells.
32511307	1	47	gly	glycoforms	133:142	arg1	the spike (S) glycoprotein	the spike (S) glycoprotein				Fterm		glycoprotein			Here we have generated 3D structures of glycoforms of the spike (S) glycoprotein from SARS-CoV-2, based on reported 3D structures and glycomics data for the protein produced in HEK293 cells.
33551170	1	16	gly	glycoprotein	360:371	arg1	GlyCAM-1	GlyCAM-1				PUBTATOR		GlyCAM-1	282430		In bovine milk serum, the whey proteins with the highest N-glycan contribution are lactoferrin, IgG, and glycosylation-dependent cellular adhesion molecule 1 (GlyCAM-1); GlyCAM-1 is the dominant N-linked glycoprotein in bovine whey protein products.
33551170	1	16	gly	glycoprotein	360:371	arg1	the dominant N-linked glycoprotein	the dominant N-linked glycoprotein				Fterm		glycoprotein			In bovine milk serum, the whey proteins with the highest N-glycan contribution are lactoferrin, IgG, and glycosylation-dependent cellular adhesion molecule 1 (GlyCAM-1); GlyCAM-1 is the dominant N-linked glycoprotein in bovine whey protein products.
33551170	1	56	gly	proteins	187:194	arg1	the highest N-glycan contribution	proteins			the highest N-glycan contribution	Fterm		proteins			In bovine milk serum, the whey proteins with the highest N-glycan contribution are lactoferrin, IgG, and glycosylation-dependent cellular adhesion molecule 1 (GlyCAM-1); GlyCAM-1 is the dominant N-linked glycoprotein in bovine whey protein products.
33748076	8	38	gly	glycoproteins	1105:1117	arg1	the GlcNAc or Galβ1-4GlcNA-containing glycoproteins	the GlcNAc or Galβ1-4GlcNA-containing glycoproteins				Fterm		glycoproteins			Datura stramonium (DSA) was selected to isolate the GlcNAc or Galβ1-4GlcNA-containing glycoproteins due to the distinct difference between ESCC patients and HVs.
32541028	0	66	gly	Tn-glycopeptides	77:92	arg2	Tn-glycopeptides			Tn-glycopeptides						Tn-glycopeptides	Structure-guided engineering of the affinity and specificity of CARs against Tn-glycopeptides.
33445487	10	14	gly	N-glycosylation	1386:1400	arg2	all six N-glycosylation sites			all six N-glycosylation sites						sites	Although all single mutants were functional in cell-cell fusion and viral entry, simultaneous inactivation of all six N-glycosylation sites severely impaired fusion activity and viral entry, suggesting a critical role of N-glycans for maintaining gB structure and function.
32355733	11	61	gly	fucosylated	1829:1839	arg1	fucosylated glycans				fucosylated glycans						RESULTS Compared to the A2780 cells, MS analysis indicated that α2,3-linked sialic structures and N-glycan gal-ratios were significantly higher, while fucosylated glycans were lower in three cisplatin-resistant variants.
32460635	4	15	gly	containing	756:765	arg1	a new neural-differentiation inductive nanocomposite AND 2-methacrylamido glucopyranose-co-3-sulfopropyl acrylate			a new neural-differentiation inductive nanocomposite	2-methacrylamido glucopyranose-co-3-sulfopropyl acrylate					nanocomposite	Here we proposed a new neural-differentiation inductive nanocomposite, containing gold nanoparticles (AuNPs), poly(2-methacrylamido glucopyranose-co-3-sulfopropyl acrylate) (PMS), and basic fibroblast growth factor (FGF2), for the high efficient directional neural-specific differentiation of mouse embryonic stem cells (mESCs).
32460635	4	15	gly	containing	756:765	arg1	a new neural-differentiation inductive nanocomposite AND poly			a new neural-differentiation inductive nanocomposite	poly					nanocomposite	Here we proposed a new neural-differentiation inductive nanocomposite, containing gold nanoparticles (AuNPs), poly(2-methacrylamido glucopyranose-co-3-sulfopropyl acrylate) (PMS), and basic fibroblast growth factor (FGF2), for the high efficient directional neural-specific differentiation of mouse embryonic stem cells (mESCs).
35011343	7	74	gly	used	1565:1568	arg2	the composition			the composition						position	Furthermore, in eluent mixtures, enantioselectivity depends on the direction from which the composition of the eluent is approached, regardless of the eluent pair used on amylose-based columns.
33445487	5	60	gly	N-glycosylation	687:701	arg2	N-glycosylation sites			N-glycosylation sites						sites	Here, we investigated the occupancy and functional relevance of N-glycosylation sites in PrV gB.
33445487	5	82	gly	occupancy	649:657	arg2	N-glycosylation sites			N-glycosylation sites						sites	Here, we investigated the occupancy and functional relevance of N-glycosylation sites in PrV gB.
33677972	4	16	gly	fucosylated	668:678	arg1	total and fucosylated HMOs	total and fucosylated HMOs				OGER		HMOs	P00540		The amount of total and fucosylated HMOs were higher in secretor than non-secretor mothers, while Bifidobacterium genus were highly enriched in infants fed by non-secretor mothers.
33992776	0	25	gly	Sequence	40:47	arg1	Glycosaminoglycan Sequence Ranking				Glycosaminoglycan Sequence Ranking						GAGrank: Software for Glycosaminoglycan Sequence Ranking Using a Bipartite Graph Model.
33445487	1	22	gly	glycoprotein	104:115	arg1	Envelope glycoprotein	glycoprotein (g				OGER		glycoprotein (g	P07996		Envelope glycoprotein (g)B is conserved throughout the Herpesviridae and mediates fusion of the viral envelope with cellular membranes for infectious entry and spread.
33973638	3	43	gly	C-type	495:500	arg1	Lectin-galC1	C-type			Lectin-galC1	Cterm		C-type			Using the Drosophila neuromuscular junction (NMJ) as a model glutamatergic synapse, we identify a new Ca2+-binding (C-type) lectin, Lectin-galC1 (LGC1), which modulates presynaptic function and neurotransmission strength.
33973638	3	45	gly	Ca2+-binding	481:492	arg1	Lectin-galC1	Ca2			Lectin-galC1	OGER		Ca2	P00918		Using the Drosophila neuromuscular junction (NMJ) as a model glutamatergic synapse, we identify a new Ca2+-binding (C-type) lectin, Lectin-galC1 (LGC1), which modulates presynaptic function and neurotransmission strength.
32172856	5	26	gly	Col/HA-Tyr	945:954	arg1	Col/HA-Tyr hydrogels			Tyr	Col/HA-Tyr hydrogels					Tyr	Unlike HA-Tyr hydrogels, encapsulation of human dermal fibroblasts within Col/HA-Tyr hydrogels allowed for high cell viability.
33445487	6	26	gly	N-glycosylation	747:761	arg2	all predicted N-glycosylation sites			all predicted N-glycosylation sites						sites	To this end, all predicted N-glycosylation sites were inactivated either singly or in combination by the introduction of conservative mutations (N➔Q).
32388896	2	4	gly	derived	410:416	arg2	antithrombin III-binding sites AND these tetrasaccharides	heparin		sites	these tetrasaccharides	Fterm		heparin		sites	Because these tetrasaccharides are derived from antithrombin III-binding sites of heparin, we examined whether this method could be applied to estimate the anticoagulant activity of heparin.
33674390	3	25	gly	N-glycosylation	503:517	arg2	a single N-glycosylation site			a single N-glycosylation site						site	The procollagen C-Pro domain possesses a single N-glycosylation site that is widely conserved in all the fibrillar procollagens across humans and diverse other species.
31970866	10	3	gly	glycosylation	1262:1274	arg2	all eight glycosylation sites			all eight glycosylation sites						sites	Moreover, protein binding capacity is determined as 213 mg/g and 41% sequence coverage of horseradish peroxidase protein with all eight glycosylation sites detected.
34661088	1	50	gly	glycosylated	129:140	arg1	The densely glycosylated spike (S) protein	The densely glycosylated spike (S) protein				Fterm		protein			The densely glycosylated spike (S) protein highly exposed on severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) surface mediates host cell entry by binding to the receptor angiotensin-converting enzyme 2 (ACE2).
32518941	7	20	gly	N-glycosylated	1121:1134	arg1	All 22 N-glycosylated sites	SARS		sites		OGER		SARS	P49591	sites	All 22 N-glycosylated sites of SARS-CoV-2 are modified by high-mannose N-glycans.
32518941	7	40	gly	modified	1160:1167	arg1	All 22 N-glycosylated sites AND high-mannose N-glycans	SARS		sites	high-mannose N-glycans	OGER		SARS	P49591	sites	All 22 N-glycosylated sites of SARS-CoV-2 are modified by high-mannose N-glycans.
32349995	2	15	gly	Glycosylation	215:227	arg1	IgG	IgG				PUBTATOR		IgG	668542		Glycosylation of immunoglobulin G (IgG) is an important post-translation process affecting the inflammatory potential of IgG.
32349995	2	15	gly	Glycosylation	215:227	arg1	immunoglobulin G	immunoglobulin G				Cterm		immunoglobulin G			Glycosylation of immunoglobulin G (IgG) is an important post-translation process affecting the inflammatory potential of IgG.
32518941	5	15	gly	N-glycosylated	904:917	arg1	all 22 predicted N-glycosylated sites			all 22 predicted N-glycosylated sites						sites	We acquired tandem mass spectrometry (MS/MS) spectrums for glycopeptides of all 22 predicted N-glycosylated sites.
32518941	5	49	gly	glycopeptides	870:882	arg1	all 22 predicted N-glycosylated sites			all 22 predicted N-glycosylated sites						sites	We acquired tandem mass spectrometry (MS/MS) spectrums for glycopeptides of all 22 predicted N-glycosylated sites.
32518941	5	49	gly	glycopeptides	870:882	arg2	glycopeptides			glycopeptides						glycopeptides	We acquired tandem mass spectrometry (MS/MS) spectrums for glycopeptides of all 22 predicted N-glycosylated sites.
33058985	7	30	gly	strain	1210:1215	arg1	the O-polysaccharide	strain			the O-polysaccharide	Fterm		strain			Applied importance of this work is that the structure of the O-polysaccharide of a strain isolated from uranium-contaminated groundwater was determined and the character of interaction between the polysaccharide and the uranyl ion was established.
33058985	2	48	gly	A-6-5	336:340	arg1	the lipopolysaccharide			A-6-5	the lipopolysaccharide					A-6-5	The O-polysaccharide (OPS) was isolated by mild acid degradation of the lipopolysaccharide of P. veronii A-6-5 and studied using sugar analysis and 1D and 2D 1H and 13C NMR spectroscopy.
32921414	4	31	gly	glycopeptide	876:887	arg2	the synthesized glycopeptide			the synthesized glycopeptide						glycopeptide	In this study, we synthesized the binding epitope region of LpMab-3 that includes the peptide (-67LVATSVNSV-T-GIRIEDLP84-) possessing a disialyl-core-1 O-glycan at Thr76, and we determined the crystal structure of the LpMab-3 Fab fragment that was bound to the synthesized glycopeptide at a 2.8 Å resolution.
32921414	4	33	gly	possessing	726:735	arg1	the peptide AND a disialyl-core-1 O-glycan			the peptide	a disialyl-core-1 O-glycan					peptide	In this study, we synthesized the binding epitope region of LpMab-3 that includes the peptide (-67LVATSVNSV-T-GIRIEDLP84-) possessing a disialyl-core-1 O-glycan at Thr76, and we determined the crystal structure of the LpMab-3 Fab fragment that was bound to the synthesized glycopeptide at a 2.8 Å resolution.
34070741	4	36	gly	glycosylated	855:866	arg1	partially glycosylated (N220Q) Kv3.1b	partially glycosylated (N220Q) Kv3.1b				Cterm		Kv3.1b			We showed that caudal primary (CaP) motor neurons of zebrafish spinal cord transiently expressing fully glycosylated (WT) Kv3.1b have stereotypical morphology, while CaP neurons expressing partially glycosylated (N220Q) Kv3.1b showed severe maldevelopment with incomplete axonal branching and extension around the ventral musculature.
34070741	4	77	gly	glycosylated	760:771	arg1	fully glycosylated (WT) Kv3.1b	fully glycosylated (WT) Kv3.1b				Cterm		Kv3.1b			We showed that caudal primary (CaP) motor neurons of zebrafish spinal cord transiently expressing fully glycosylated (WT) Kv3.1b have stereotypical morphology, while CaP neurons expressing partially glycosylated (N220Q) Kv3.1b showed severe maldevelopment with incomplete axonal branching and extension around the ventral musculature.
33551170	8	125	gly	GlyCAM-1	1523:1530	arg1	the glycans	GlyCAM-1			the glycans	PUBTATOR		GlyCAM-1	282430		The degree of fucosylation ranged from 44.8 to 73.3% between cows, and this variation was mainly attributed to the glycans of GlyCAM-1.
32507236	5	16	gly	AZGP1	803:807	arg1	The isomeric glycan structures	AZGP1			The isomeric glycan structures	PUBTATOR		AZGP1	563		The isomeric glycan structures of AZGP1 in these spots were systematically characterized both at composition level and at structure level.
32507236	11	47	gly	glycoprotein	1626:1637	arg1	a target glycoprotein biomarker	a target glycoprotein biomarker				Fterm		glycoprotein			Our developed strategy holds promise for thorough identification of glycan structures on a target glycoprotein biomarker.
31915902	10	40	gly	N-glycoforms	1550:1561	arg1	IgG N-glycoforms	IgG N-glycoforms				Cterm		IgG			• BSA significantly changes IgG N-glycoforms as a medium additive.
34925283	7	57	gly	glycoproteins	1277:1289	arg1	salinarum glycoproteins	salinarum glycoproteins				Fterm		glycoproteins			salinarum glycoproteins.
34574138	9	7	gly	glycopeptides	1357:1369	arg2	glycopeptides	CMP		peptides and glycopeptides		OGER		CMP	P21941	peptides and glycopeptides	Overall, this novel approach provides comprehensive characterization of CMP and CMP-derived peptides and glycopeptides, and it can be applied in future studies of product quality, digestive survival and bioactivity.
34574138	9	7	gly	glycopeptides	1357:1369	arg1	CMP-derived peptides	CMP		peptides and glycopeptides		OGER		CMP	P21941	peptides and glycopeptides	Overall, this novel approach provides comprehensive characterization of CMP and CMP-derived peptides and glycopeptides, and it can be applied in future studies of product quality, digestive survival and bioactivity.
34574138	9	7	gly	glycopeptides	1357:1369	arg1	CMP-derived peptides			peptides and glycopeptides						peptides and glycopeptides	Overall, this novel approach provides comprehensive characterization of CMP and CMP-derived peptides and glycopeptides, and it can be applied in future studies of product quality, digestive survival and bioactivity.
33020657	2	9	gly	glycopeptides	418:430	arg2	O-linked glycopeptides			O-linked glycopeptides						glycopeptides	We present MSFragger-Glyco, a glycoproteomics mode of the MSFragger search engine, for fast and sensitive identification of N- and O-linked glycopeptides and open glycan searches.