doc_id	sent_index	relation_id	relation	trigger	trigger_offset	arg_num	arg_base_np	arg_protein	arg_domain	arg_site	arg_sugar	PSource	SiteSource	NProtein	NID	SiteName	sent_text
30518374	9	21	gly	sialylation	1775:1785	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			CONCLUSIONS Together, our data demonstrate that neonatal LPS exposure results in specific and sustained induction of Neu1 and Neu4, causing long-lasting negative changes in sialylation of glycoproteins on brain cells.
30518374	9	85	gly	glycoproteins	1790:1802	arg1	sialylation	glycoproteins			sialylation	Fterm		glycoproteins			CONCLUSIONS Together, our data demonstrate that neonatal LPS exposure results in specific and sustained induction of Neu1 and Neu4, causing long-lasting negative changes in sialylation of glycoproteins on brain cells.
30769335	6	54	part_of	proteins	1164:1171	arg1	a complex composition	proteins		a complex composition		Fterm	Site	proteins		position	RESULTS On the biochemical level, a complex composition of native proteins was detected.
31987167	10	29	gly	glycoproteins	1597:1609	arg1	81 glycoproteins	81 glycoproteins				Fterm		glycoproteins			Liquid chromatography-tandem mass spectrometry (LC-MS/MS) analysis clearly demonstrated that after enriching with CPBA-Ni6PW9/SA, 81 glycoproteins are identified and 79.4% recognition selectivity is achieved.
29783150	0	44	part_of	gelatin	51:57	arg1	Electrophoretic deposition	gelatin		Electrophoretic deposition		Fterm	Site	gelatin		position	Electrophoretic deposition of dexamethasone-loaded gelatin nanospheres/chitosan coating and its dual function in anti-inflammation and osteogenesis.
29578067	2	64	part_of	composition	453:463	arg1	growing pigs	pigs		composition		OGER	Site	pigs	Q96S52	position	The objective of this study was to characterize the impact of parenteral antibiotics administration on the composition and diversity of the resident fecal microbiota in growing pigs.
29584947	3	58	part_of	CNC-based	507:515	arg1	CNC-based nanocomposites	CNC		CNC-based nanocomposites		OGER	Site	CNC	P32418	nanocomposites	CNC-based nanocomposites having zinc oxide (ZnO), titanium dioxide (TiO2), and silver oxide (Ag2O) have been obtained through evaporation-induced self-assembly (EISA) in acqueous solution.
31924036	1	71	part_of	NBent-NTiO2-Chit	153:168	arg1	A novel NBent-NTiO2-Chit nanocomposite	Chit		A novel NBent-NTiO2-Chit nanocomposite		PUBTATOR	Site	Chit	1118	nanocomposite	A novel NBent-NTiO2-Chit nanocomposite has been synthesized from the crosslinking combination of nanotitanium oxide-chitosan (NTiO2-Chit) and nanotitanium oxide-bentonite (NTiO2-Bent) via formaldehyde.
30851844	0	64	gly	N-glycopeptides	46:60	arg2	intact tryptic N-glycopeptides			intact tryptic N-glycopeptides						N-glycopeptides	A practical approach to enrich intact tryptic N-glycopeptides through size exclusion chromatography and hydrophilicity (SELIC) using an acrylamide-agarose composite gel system.
30940835	0	27	gly	glycopeptides	88:100	arg2	amyloid-beta glycopeptides			amyloid-beta glycopeptides						glycopeptides	Synthetic standard aided quantification and structural characterization of amyloid-beta glycopeptides enriched from cerebrospinal fluid of Alzheimer's disease patients.
31078975	5	54	part_of	MWNT-PEG/β-CD	1097:1109	arg1	MWNT-PEG/β-CD nanocomposite	-CD		MWNT-PEG/β-CD nanocomposite		PUBTATOR	Site	-CD	65057	nanocomposite	Moreover, the kinetic, isotherm equilibrium, and thermodynamic parameters of adsorption of TCS on MWNT-PEG/β-CD nanocomposite was examined.
29549767	10	108	part_of	composition	1982:1992	arg1	PMPC	PMPC		composition		OGER	Site	PMPC		position	Unlike PDMA brush, the flow conditions did not affect the composition of protein corona on PMPC and PHPMA brushes.
29391424	4	2	gly	glycopeptides	538:550	arg2	O-linked glycopeptides			O-linked glycopeptides						glycopeptides	Automated annotation of both N- and O-linked glycopeptides was proven using standard glycoproteins.
29391424	4	20	gly	glycoproteins	578:590	arg1	standard glycoproteins	standard glycoproteins				Fterm		glycoproteins			Automated annotation of both N- and O-linked glycopeptides was proven using standard glycoproteins.
30398401	11	121	part_of	ECM	1689:1691	arg1	ECM biochemical composition	ECM		ECM biochemical composition		OGER	Site	ECM	Q13201	position	ECM biochemical composition was characterized both in the fresh porcine pancreas and all decellularized pECM hydrogels by quantitative mass spectrometry analysis.
31544955	1	48	gly	glycoproteins	154:166	arg1	glycoproteins	glycoproteins			N-glycans	Fterm		glycoproteins			Chinese hamster ovary (CHO) cells typically produce glycoproteins with N-glycans terminating in α-2,3 sialylation.
30848905	4	65	part_of	protein	943:949	arg1	the composition	protein		the composition		Fterm	Site	protein		position	We show that each protein has a unique pattern of interaction with the surrounding membrane, which is influenced by the composition of the protein, the level of LPS in the outer leaflet, and the differing mobilities of the lipids in the two leaflets of the membrane.
31013774	0	14	part_of	Hemp-Straw	0:9	arg1	Hemp-Straw Composites	Hemp		Hemp-Straw Composites		OGER	Site	Hemp	Q7L5Y9	Composites	Hemp-Straw Composites: Gluing Study and Multi-Physical Characterizations.
31212920	7	77	part_of	HMOs	1446:1449	arg1	HMOs composition	HMOs		HMOs composition		OGER	Site	HMOs	P00540	position	Differences in HMOs composition attributed to maternal SeLe phenotype do not impact infant growth, but higher concentrations of specific HMOs may protect against excessive weight gain.
31423772	6	12	part_of	MOF	1386:1388	arg1	functional MOF composites	MOF		functional MOF composites		OGER	Site	MOF	Q9H7Z6	composites	Therefore, it was expected that this work could provide new insights and inspirations for the screening of clinical antidiabetic drugs and for further exploration of functional MOF composites.
29423317	10	56	gly	glycosylation	1671:1683	arg2	the glycosylation site sequon			site sequon						site sequon	Modification of the glycosylation site sequon provides a potential approach for the development of next-generation "precise conjugate vaccines."
30500765	1	2	part_of	composition	303:313	arg1	SMS	SMS		composition		OGER	Site	SMS	P52788	position	Hot-air (75-100 °C) pasteurisation (HAP) of birch-wood-based substrate was compared to conventional autoclaving (steam at 121 °C) with regard to shiitake growth and yield, chemical composition of heat-pretreated material and spent mushroom substrate (SMS), enzymatic digestibility of glucan in SMS, and theoretical bioethanol yield.
31312254	7	6	part_of	rhLF	1254:1257	arg1	the three typical N-glycosylation sites	rhLF		the three typical N-glycosylation sites		OGER	Site	rhLF	P02788	sites	Eight types of N-glycans which dominated by the GlcNAc (4) Man (3) (61.15%) and the GlcNAc (3) Man (3) (17.98%) were identified at the three typical N-glycosylation sites of the rhLF.
31726154	0	25	part_of	gelatin-TiO2	39:50	arg1	gelatin-TiO2 nanocomposite	gelatin		gelatin-TiO2 nanocomposite		Fterm	Site	gelatin		nanocomposite	Hydroxypropyl methylcellulose-TiO2 and gelatin-TiO2 nanocomposite films: Physicochemical and structural properties.
30625558	4	43	part_of	proteins	792:799	arg1	hisitidine residues	proteins		hisitidine residues		Fterm	Site	proteins		residues	The adsorption was governed by strong metal affinity binding force between hisitidine residues of proteins and immobilized Cu2+ ions of MGCI-Cu composite.
29793112	11	131	part_of	gelatin	1763:1769	arg1	all the examined compositions	gelatin		all the examined compositions		Fterm	Site	gelatin		positions,	RESULTS Among all the examined compositions, a blend of 8% w/v gelatin, 2% w/v elastin and 0.5% w/v sodium hyaluronate was found to be appropriate for printing.
31987167	5	82	gly	glycoproteins	873:885	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			The moiety of sodium alginate (SA) in the hybrid further improves the isolation/enrichment capacity for glycoproteins through hydrophilic interaction.
31687407	11	87	part_of	KI	1581:1582	arg1	the KI composition	KI		the KI composition		PUBTATOR	Site	KI	21941	position	RESULTS Daily use of the KI composition significantly decreased levels of blood glucose and blood triglycerides, as well as improved the insulin production in islets or reduced development of obesity in STZ-induced diabetic rats or in db/db mice.
29423317	7	80	gly	glycosylation	1255:1267	arg2	Ser			Ser						Ser	Furthermore, we replaced the peptides after the glycosylation site (Ser) with an antigenic peptide (P2).
29423317	7	80	gly	glycosylation	1255:1267	arg2	the glycosylation site			the glycosylation site						site	Furthermore, we replaced the peptides after the glycosylation site (Ser) with an antigenic peptide (P2).
31848088	0	81	part_of	PEI-β-CD	92:99	arg1	Fe3O4-g-CN@PEI-β-CD nanocomposite	-CD		Fe3O4-g-CN@PEI-β-CD nanocomposite		PUBTATOR	Site	-CD	65057	nanocomposite	Bio-inspired, high, and fast adsorption of tetracycline from aqueous media using Fe3O4-g-CN@PEI-β-CD nanocomposite: Modeling by response surface methodology (RSM), boosted regression tree (BRT), and general regression neural network (GRNN).
29778838	7	64	part_of	pectin	857:862	arg1	alcohol-insoluble residues	pectin		alcohol-insoluble residues		Fterm	Site	pectin		residues	Biochemical analysis showed a decrease in galacturonic acid (GalA) in alcohol-insoluble residues (AIR) and water-soluble pectin concomitant to softening, paralleled by an increase in polygalacturonase (PG) activity.
31676555	1	13	gly	glycoprotein	192:203	arg1	O-linked glycoprotein carbohydrates				O-linked glycoprotein carbohydrates						The generation of free N-glycans, or unconjugated oligosaccharides derived from N-linked glycoproteins, is well understood, but whether a similar fate awaits O-linked glycoprotein carbohydrates was unknown.
31676555	1	15	gly	glycoproteins	114:126	arg1	N-linked glycoproteins	N-linked glycoproteins				Fterm		glycoproteins			The generation of free N-glycans, or unconjugated oligosaccharides derived from N-linked glycoproteins, is well understood, but whether a similar fate awaits O-linked glycoprotein carbohydrates was unknown.
31676555	1	21	gly	derived	92:98	arg1	N-linked glycoproteins AND unconjugated oligosaccharides	N-linked glycoproteins			unconjugated oligosaccharides	Fterm		glycoproteins			The generation of free N-glycans, or unconjugated oligosaccharides derived from N-linked glycoproteins, is well understood, but whether a similar fate awaits O-linked glycoprotein carbohydrates was unknown.
30033277	8	67	part_of	CNT-β-CD-HPG	1209:1220	arg1	CNT-β-CD-HPG composites	-CD		CNT-β-CD-HPG composites		PUBTATOR	Site	-CD	65057	composites	The successful preparation of CNT-β-CD-HPG composites could be confirmed via a series of characterization techniques.
30035760	2	19	gly	glycoproteins	274:286	arg1	these glycoproteins	these glycoproteins				Fterm		glycoproteins			On leukocytes, several of these glycoproteins possess immunoglobulin (Ig) folds and are central to immune recognition and regulation.
30035760	5	20	gly	glycoproteins	761:773	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			Two suspension human embryonic kidney (HEK) cell lines, HEK293F and HEK293S, are used to express glycoproteins harbouring complex and high-mannose glycans, respectively.
31659420	8	26	gly	sialylated	1745:1754	arg1	the sialylated lactulose groups				the sialylated lactulose groups						The results of the intestinal microbiota sample composition indicated that there were differences between the sialylated lactulose groups and the normal control group.
31234557	10	90	part_of	pectin	1618:1623	arg1	the HG domain	pectin		the HG domain		Fterm	Site	pectin		domain	Ultra-performance liquid chromatography - tandem mass spectrometer (UPLC-MS) and monosaccharide composition analyses demonstrated that PpPel9a worked as an endo-pectate lyase, which acted primarily on the HG domain of citrus pectin.
30719912	3	58	part_of	globulin	632:639	arg1	the extension region (ER) fragments	globulin		the extension region (ER) fragments		Fterm	Site	globulin		fragments	In vitro fermentation experiments showed that the extension region (ER) fragments of soybean 7S globulin selectively suppressed proinflammatory Gram-negative bacteria.
30717102	1	14	part_of	saponin	97:103	arg1	The saponin composition	saponin		The saponin composition		Fterm	Site	saponin		position	The saponin composition of a specimen of black sea cucumber, Holothuria atra collected in the Persian Gulf was studied by a combined approach including LC-MS/MS, Molecular Networking, pure compound isolation, and NMR spectroscopy.
30844259	2	11	gly	residues	465:472	arg1	guluronic acid (G) residues			residues	guluronic acid (G) residues					residues	Recently, we have shown that alginate from algal sources all contain a fraction of very long G-blocks (VLG), that is, consecutive sequences of guluronic acid (G) residues of more than 100 residues.
30265981	2	25	gly	used	356:359	arg2	This composite			This composite						composite	This composite was then used in the electrode modification for the determination of theophylline.
30398401	3	95	part_of	ECM	520:522	arg1	the ECM composition	ECM		the ECM composition		OGER	Site	ECM	Q13201	position	Tissue-derived decellularized biomaterials can preserve the ECM composition of the native tissue making it an ideal scaffold for 3D tissue engineering applications.
29778476	2	44	part_of	IgE-binding	354:364	arg1	IgE-binding epitopes	IgE		IgE-binding epitopes		OGER	Site	IgE	P01854	epitopes	One potential approach to decrease protein allergenicity is to block IgE-binding epitopes of the protein allergen by attachment of polysaccharides via the Maillard reaction (i.e., glycation).
29969488	4	2	part_of	milk	809:812	arg1	milk composition	milk		milk composition		PUBTATOR	Site	milk	100532204	position	Their faecal microbiota and milk composition were determined and the colonic microbiota, short-chain fatty acids (SCFA) production and gut health related parameters of the piglets were measured two days before weaning.
31923961	5	14	part_of	cellulose/PAH-CuHARS	989:1008	arg1	the cellulose/PAH-CuHARS composites	PAH		the cellulose/PAH-CuHARS composites		OGER	Site	PAH	P00439	composites	Based on these characteristics, the cellulose/PAH-CuHARS composites are promising for potential biomedical applications as implants or wound dressing materials.
31785876	2	57	gly	attachment	335:344	arg2	proteins AND polysaccharides	proteins			polysaccharides	Fterm		proteins			Hydrolysis of food proteins reduces their allergenicity, but another novel approach is the covalent attachment of polysaccharides to proteins via the Maillard reaction (i.e., glycation), which blocks some IgE binding epitopes on the protein allergen.
29524801	5	64	gly	domain	768:773	arg1	the cell-wall pectic polysaccharide domain rhamnogalacturonan-II				the cell-wall pectic polysaccharide domain rhamnogalacturonan-II						Membrane ATPase activity and the cell-wall pectic polysaccharide domain rhamnogalacturonan-II (RG-II) were analysed to find out interspecific differences.
31074612	3	5	part_of	PPy	497:499	arg1	PPy deposition	PPy		PPy deposition		OGER	Site	PPy	P01298	position	PPy deposition was achieved via in situ polymerization of pyrrole using ammonium persulfate as an oxidant and laccase as a catalyst.
31482162	0	45	gly	glycopeptide	21:32	arg2	Trehalose-functional glycopeptide			Trehalose-functional glycopeptide						glycopeptide	Trehalose-functional glycopeptide enhances glycerol-free cryopreservation of red blood cells.
29391424	6	41	gly	glycopeptide	877:888	arg2	O-linked glycopeptide spectra			O-linked glycopeptide spectra						glycopeptide	Thus, a single tool was developed that collectively allows the (i) elucidation of N- and O-linked glycopeptide spectra, (ii) matching glycopeptides to known protein sequences, and (iii) high-throughput, batch-wise analysis of large-scale glycoproteomics data sets.
29391424	6	59	gly	glycopeptides	913:925	arg2	glycopeptides			glycopeptides						glycopeptides	Thus, a single tool was developed that collectively allows the (i) elucidation of N- and O-linked glycopeptide spectra, (ii) matching glycopeptides to known protein sequences, and (iii) high-throughput, batch-wise analysis of large-scale glycoproteomics data sets.
30593802	10	37	gly	used	1473:1476	arg2	bentonite/chitosan@Co3O4 green composite			bentonite/chitosan@Co3O4 green composite						composite	Besides that, bentonite/chitosan@Co3O4 green composite was used in purification of realistic water samples which make it one of the promising adsorbents.
30851844	2	30	gly	glycoprotein	405:416	arg1	the glycoprotein	the glycoprotein				Fterm		glycoprotein			Specially, site-specific glycosylation and its associated heterogeneity are closely related to the function and activity of the glycoprotein.
29969488	0	72	part_of	milk	97:100	arg1	their faecal microbiota and milk composition	milk		their faecal microbiota and milk composition		PUBTATOR	Site	milk	100532204	position	Feeding sows resistant starch during gestation and lactation impacts their faecal microbiota and milk composition but shows limited effects on their progeny.
30350625	7	35	gly	N-glycopeptides	979:993	arg2	N-glycopeptides			N-glycopeptides						N-glycopeptides	The de-N-deglycosylation decreased the abundance of N-glycopeptides, the desialylation simplified the O-glycans and the enzymatic oxidization conferred the enrichment specificity.
31482162	8	65	gly	glycopeptides	1317:1329	arg2	biocompatible glycopeptides			biocompatible glycopeptides						glycopeptides	The combined usage of biocompatible glycopeptides and trehalose could potentially be applied in the glycerol-free cryopreservation of cells and tissues in biomedicine.
31482162	5	52	gly	glycopeptide	844:855	arg2	the glycopeptide			the glycopeptide						glycopeptide	Cryopreservation via membrane stabilization was proposed such that the glycopeptide could attach on the cell membrane surface of RBCs to protect the cell membrane from osmotic injury by electrostatic interactions, π-π stacking and hydrogen bonding.
31248580	4	68	gly	position	599:606	arg1	glycans			position	glycans					position	Due to their abundance and their terminal position in glycans, sialic acids are implicated in many physiological and pathological functions.
31217009	5	7	gly	used	1000:1003	arg2	the composites			the composites						composites	The release of Er was greatly accelerated under near infrared laser (NIR) irradiation, showing that the composites can be used as responsive systems, with Er release controllable through NIR irradiation.
30903686	3	38	gly	glycosylation	608:620	arg2	human and mouse glycosylation sites			human and mouse glycosylation sites						sites	Here, we constructed the largest dataset of human and mouse glycosylation sites to train deep learning neural networks and support vector machine classifiers to predict N-/O-linked glycosylation sites, respectively.
30903686	3	50	gly	glycosylation	729:741	arg2	N-/O-linked glycosylation sites			N-/O-linked glycosylation sites						sites	Here, we constructed the largest dataset of human and mouse glycosylation sites to train deep learning neural networks and support vector machine classifiers to predict N-/O-linked glycosylation sites, respectively.
30635335	3	19	gly	pole	590:593	arg1	the expected growth sites			the expected growth sites						sites	We also show that the major outer membrane protein Omp25 and peptidoglycan are incorporated at the new pole and the division site, the expected growth sites.
31079452	4	25	part_of	glycoprotein	885:896	arg1	multiple N-glycosylation sites	glycoprotein		multiple N-glycosylation sites		Fterm	Site	glycoprotein		sites	Using the AXL receptor tyrosine kinase (AXL) as a model glycoprotein with multiple N-glycosylation sites, we show that those LCMS features that could be grouped into graph networks on the basis of glycan mass and retention time differences were actually N-glycopeptides with the same peptide backbone but different N-glycan compositions.
31786303	3	32	part_of	CUR/FCt-NPs	383:393	arg1	CUR/FCt-NPs composite	CUR/FCt-NPs		CUR/FCt-NPs composite		OGER	Site	CUR/FCt-NPs	P0C0P6	composite	The synthesis of CUR/FCt-NPs composite was succeeded as evidenced from their FTIR spectra.
31010593	2	65	part_of	stage	488:492	arg1	local matrix composition	age		local matrix composition		PUBTATOR	Site	age	516214	position	However, variations in micromechanics among arterial layers (i.e. intima, media, adventitia), as well as dependency on local matrix composition and/or structure, anatomical location or developmental stage remain largely unknown.
31987167	1	59	gly	glycoproteins	167:179	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			Boronate affinity is widely used for the isolation of glycoproteins at alkaline conditions.
30035760	6	17	gly	glycoproteins	852:864	arg1	These recombinant glycoproteins	These recombinant glycoproteins				Fterm		glycoproteins			These recombinant glycoproteins with different glycoforms allow investigating the effect of glycan size and composition on ligand binding.
31350933	6	54	part_of	pectin	845:850	arg1	pectin composition	pectin		pectin composition		Fterm	Site	pectin		position	Our data demonstrate changes in pectin composition during dehydration/rehydration which is suggested to affect cell wall properties.
31687407	12	115	part_of	KI	1821:1822	arg1	KI composition	KI		KI composition		PUBTATOR	Site	KI	21941	position	Such effects from KI composition were better than single ingredient of konjac or inulin extract.
31659420	5	1	gly	sialylated	988:997	arg1	the sialylated lactulose groups				the sialylated lactulose groups						At the phylum level, the relative abundance of Firmicutes was increased in the sialylated lactulose groups, while the abundance of Bacteroidetes was decreased.
30210478	1	11	gly	linked	326:331	arg1	other proteins AND a unique, complex decasaccharide	other proteins			a unique, complex decasaccharide	Fterm		proteins			The cell surface of the oral pathogen Tannerella forsythia is heavily glycosylated with a unique, complex decasaccharide that is O-glycosidically linked to the bacterium's abundant surface (S-) layer, as well as other proteins.
31079452	4	36	gly	glycoprotein	885:896	arg1	a model glycoprotein	a model glycoprotein				Fterm		glycoprotein			Using the AXL receptor tyrosine kinase (AXL) as a model glycoprotein with multiple N-glycosylation sites, we show that those LCMS features that could be grouped into graph networks on the basis of glycan mass and retention time differences were actually N-glycopeptides with the same peptide backbone but different N-glycan compositions.
31079452	4	67	gly	N-glycosylation	912:926	arg2	multiple N-glycosylation sites			multiple N-glycosylation sites						sites	Using the AXL receptor tyrosine kinase (AXL) as a model glycoprotein with multiple N-glycosylation sites, we show that those LCMS features that could be grouped into graph networks on the basis of glycan mass and retention time differences were actually N-glycopeptides with the same peptide backbone but different N-glycan compositions.
31079452	4	93	gly	N-glycopeptides	1083:1097	arg2	N-glycopeptides			N-glycopeptides						N-glycopeptides	Using the AXL receptor tyrosine kinase (AXL) as a model glycoprotein with multiple N-glycosylation sites, we show that those LCMS features that could be grouped into graph networks on the basis of glycan mass and retention time differences were actually N-glycopeptides with the same peptide backbone but different N-glycan compositions.
31677578	2	73	gly	occupied	378:385	arg2	the adsorptive sites			the adsorptive sites						sites	However, graphene adsorbents are seldom used in soil remediation, because the adsorptive sites on graphene would be occupied by soil components.
31565939	6	25	gly	residue	1083:1089	arg1	the hexasaccharide analogue			residue in	the hexasaccharide analogue					residue in	More importantly, the results also proved that the reducing-end glucose residue in the hexasaccharide analogue of Lewis Y was probably not involved in its interaction with the immune system, whose discovery can have a broad impact on the design of new cancer vaccines.
31394143	3	11	part_of	receptors	595:603	arg1	composition	receptors		composition		Fterm	Site	receptors		position	Palatable food consumption and food-seeking is associated with changes in the abundance and composition of AMPA receptors in the nucleus accumbens (NAc) but differing results have been reported.
31539460	2	31	gly	enzymes	412:418	arg1	soluble saccharides	enzymes			soluble saccharides	Fterm		enzymes			This study characterized amylolytic enzymes activities, including α-amylase, β-amylase, and α-glucosidase, and soluble saccharides from germinated rice cultivars of four rice cultivars, including waxy, short grain, medium grain, and long grain, under aerobic and anaerobic germination conditions over 4 days and then mashed at 55, 65, 75, and 85 °C.
31659420	7	7	gly	sialylated	1413:1422	arg1	the sialylated lactulose groups				the sialylated lactulose groups						Diversity analysis indicated that the index of Chao was higher in the sialylated lactulose groups than in the normal control group, and the Shannon and Simpson diversity indices were higher in the Kdnα-2,6-lactulose group and the Neu5Ac-α2,3-lactulose group than in the normal control group.
30035760	3	72	part_of	CD22	517:520	arg1	the extracellular domain	B cell receptor CD22		the extracellular domain		PUBTATOR	Site	B cell receptor CD22	933	domain	Here, we present a platform for the design, expression and biophysical characterization of the extracellular domain of human B cell receptor CD22.
29391228	5	40	part_of	Cht	764:766	arg1	the composition	Cht		the composition		OGER	Site	Cht	Q9GZV3	position	It was observed that the properties of the coated papers were strongly dependent on the composition of Cht:St-AgNPs.
31690047	4	53	part_of	extensin	827:834	arg1	extensin epitopes	extensin		extensin epitopes		PUBTATOR	Site	extensin	108215144	epitopes	So far, especially for the carrot, a model species for in vitro cultures, it has not been specified what pectic, arabinogalactan protein (AGP) and extensin epitopes are involved in the reconstruction of the wall in protoplast-derived cells.
29605717	10	100	part_of	ECM	1621:1623	arg1	ECM composition	ECM		ECM composition		OGER	Site	ECM	Q13201	position,	Overall a strong patient-to-patient variability was evident in the ECM composition, structure and biomechanics of individual colon carcinoma tissues.
30614079	5	60	gly	acid	912:915	arg1	residues			residues						alanine residues	Cell body peptidoglycan contained primarily DD-crosslinks between meso-diaminopimelic acid and D-alanine residues, whereas stalk peptidoglycan had more LD-transpeptidation (meso-diaminopimelic acid-meso-diaminopimelic acid), mediated by LdtD.
29649136	9	40	part_of	PNN	1311:1313	arg1	PNN composition	PNN		PNN composition		PUBTATOR	Site	PNN	Q9H307	position	The results indicate that (1) aggrecan labels spinal PNNs better than WFA, and (2) there are differences in PNN composition and their associated neuronal populations between the spinal cord and cortex.
29649519	7	6	part_of	BDP	1422:1424	arg1	BDP deposition	BDP		BDP deposition		OGER	Site	BDP	Q8IVW6	position	BDP present within the multi-layer did not disperse as individual primary particles but as dense agglomerates, which led to a decrease in aerosol performance and increased percentage of BDP deposition within the Apparatus E induction port and pre-separator.
29584947	5	76	part_of	CNC	893:895	arg1	CNC based nanocomposites	CNC		CNC based nanocomposites		OGER	Site	CNC	P32418	nanocomposites	Furthermore, disintegrability in composting condition of CNC based nanocomposites was here investigated for the first time.
31079452	2	43	gly	peptide	553:559	arg1	unexpected glycan or peptide sequences				unexpected glycan or peptide sequences						Such database-dependent approaches come with challenges such as needing high-quality informative MS/MS spectra, ignoring unexpected glycan or peptide sequences, and making incorrect assignments because some glycan combinations are equivalent in mass to amino acids.
30423717	8	23	part_of	PAP-SF/COL/HA	966:978	arg1	the PAP-SF/COL/HA composite	PAP		the PAP-SF/COL/HA composite		OGER	Site	PAP	P15309	composite	The defects were almost completely repaired after 13 weeks in the PAP-SF/COL/HA group, thereby indicating that the PAP-SF/COL/HA composite had a favorable effect on articular cartilage repair.
31350933	3	22	part_of	pectin	389:394	arg1	cell wall pectin composition	pectin		cell wall pectin composition		Fterm	Site	pectin		position,	To understand this process changes in cell wall pectin composition, and the role of the apoplastic glycine-rich protein 1 (CpGRP1) were analysed.
30902717	1	44	part_of	HCCS	321:324	arg1	hydrocalumite-chitosan (HCCS) composite	HCCS		hydrocalumite-chitosan (HCCS) composite		OGER	Site	HCCS	P53701	composite	A magnetic adsorbent namely magnetic iron oxide encrusted hydrocalumite-chitosan (Fe3O4@HCCS) composite was prepared by the fabrication of magnetic iron oxide (Fe3O4) particles on hydrocalumite-chitosan (HCCS) composite for fluoride sorption studies in batch mode.
31378498	1	18	part_of	protein	194:200	arg1	Amino acid composition	protein		Amino acid composition		Fterm	Site	protein		position	Amino acid composition of metabolizable protein (MP) is important in dairy cattle diets, but effects of AA imbalances on energy and N utilization are unclear.
31776786	12	40	part_of	rhBMP-2-loaded	1820:1833	arg1	rhBMP-2-loaded hollow HA microspheres/CS composite	rhBMP-2		rhBMP-2-loaded hollow HA microspheres/CS composite		OGER	Site	rhBMP-2	P12643	composite	CONCLUSION The BMP-2-TAK1-p38-OSX signaling pathway may play an important role in bone formation and repair mediated by rhBMP-2-loaded hollow HA microspheres/CS composite.
30930265	2	31	part_of	multi-walled	373:384	arg1	Three multi-walled carbon nanotube (MWCNT) biocomposites	multi		Three multi-walled carbon nanotube (MWCNT) biocomposites		OGER	Site	multi		biocomposites	Three multi-walled carbon nanotube (MWCNT) biocomposites based on H1 were also prepared.
31853645	16	55	gly	used	1849:1852	arg2	The nanocomposite			The nanocomposite						nanocomposite	The nanocomposite was used to construct a chemiluminescence (CL) assay for tetracycline.
30728244	3	93	gly	terminus	564:571	arg1	the first mannose			terminus	the first mannose					terminus	To investigate free GPIs in cultured cell lines and mouse tissues, here we used the T5-4E10 mAb (T5 mAb), which recognizes unlinked GPIs having an N-acetylgalactosamine (GalNAc) side chain linked to the first mannose at the nonreducing terminus.
31079452	5	66	gly	unglycosylated	1179:1192	arg1	unglycosylated peptides			unglycosylated peptides						peptides	Conversely, unglycosylated peptides did not exhibit this grouping behavior.
30940587	10	64	gly	utilized	1407:1414	arg2	The synthesized n-GO@HTCS biocomposite			The synthesized n-GO@HTCS biocomposite						biocomposite	The synthesized n-GO@HTCS biocomposite was also utilized in the field conditions.
30717102	2	32	part_of	saponin	328:334	arg1	The saponin composition	saponin		The saponin composition		Fterm	Site	saponin		position	The saponin composition of Holothuria atra turned out to be more complex than previously reported.
29393589	10	4	part_of	PEG	1210:1212	arg1	PEG reagent composition	PEG		PEG reagent composition		OGER	Site	PEG	P09466	position	Selectivity of over 2000 is obtained by proper adjustment of PEG reagent composition.
31434476	1	94	gly	origin	222:227	arg1	a polysaccharide	origin			a polysaccharide	Fterm		origin			Among the many nonviral gene delivery vectors, chitosan, being a polysaccharide of natural origin, has gained special importance.
30851844	4	8	gly	N-glycopeptide	679:692	arg2	a practical intact tryptic N-glycopeptide enrichment method			a practical intact tryptic N-glycopeptide enrichment method						N-glycopeptide	In the present study, we developed a practical intact tryptic N-glycopeptide enrichment method using acrylamide-agarose composite gel that combined the size exclusion chromatography and hydrophilic (named SELIC) effects, aimed to remove the detergent rapidly and effectively, as well as enrich intact N-glycopeptides while extracting peptides.
30851844	4	10	gly	N-glycopeptides	918:932	arg2	enrich intact N-glycopeptides			enrich intact N-glycopeptides						N-glycopeptides	In the present study, we developed a practical intact tryptic N-glycopeptide enrichment method using acrylamide-agarose composite gel that combined the size exclusion chromatography and hydrophilic (named SELIC) effects, aimed to remove the detergent rapidly and effectively, as well as enrich intact N-glycopeptides while extracting peptides.
29055059	10	101	gly	glycopeptides	1804:1816	arg2	O-linked glycopeptides			O-linked glycopeptides						glycopeptides	The results also demonstrate the ability of this approach to allow the identification of glycan composition in N- and O-linked glycopeptides, in positive ion mode.
29558455	3	4	gly	glycoproteins	470:482	arg1	S-layer glycoproteins	S-layer glycoproteins				Fterm		glycoproteins			Here, we describe S-layer glycoproteins found in multiple Haloferax strains and perform comparative genomics analyses of major and alternative glycosylation clusters of isolates from two coastal sites.
31107901	5	59	gly	glycans	1677:1683	arg1	A solvent-exposed peptide			A solvent-exposed peptide	A solvent-exposed peptide		Site			peptide	A solvent-exposed peptide (smugS peptide) from the Gp35/50 kDa mucins protein scaffolds and a branched, Galf-containing trisaccharide (Galfβ1-4[Galpβ1-6]GlcNAcα) from their O-linked glycans were identified as main adhesion determinants for these molecules.
31107901	5	59	gly	glycans	1677:1683	arg1	smugS peptide			smugS peptide	smugS peptide		Site			peptide	A solvent-exposed peptide (smugS peptide) from the Gp35/50 kDa mucins protein scaffolds and a branched, Galf-containing trisaccharide (Galfβ1-4[Galpβ1-6]GlcNAcα) from their O-linked glycans were identified as main adhesion determinants for these molecules.
31107901	5	137	gly	trisaccharide	1615:1627	arg1	A solvent-exposed peptide			A solvent-exposed peptide	A solvent-exposed peptide		Site			peptide	A solvent-exposed peptide (smugS peptide) from the Gp35/50 kDa mucins protein scaffolds and a branched, Galf-containing trisaccharide (Galfβ1-4[Galpβ1-6]GlcNAcα) from their O-linked glycans were identified as main adhesion determinants for these molecules.
31107901	5	137	gly	trisaccharide	1615:1627	arg1	smugS peptide			smugS peptide	smugS peptide		Site			peptide	A solvent-exposed peptide (smugS peptide) from the Gp35/50 kDa mucins protein scaffolds and a branched, Galf-containing trisaccharide (Galfβ1-4[Galpβ1-6]GlcNAcα) from their O-linked glycans were identified as main adhesion determinants for these molecules.
31207953	4	97	gly	moieties	969:976	arg1	position			position	position		Site			position	Psolusosides E (2), F (3), and G (4) contain holostane aglycones identical to each other and differ in their sugar compositions and the quantity and position of sulfate groups in linear tetrasaccharide carbohydrate moieties.
31207953	4	110	gly	position	903:910	arg1	linear tetrasaccharide carbohydrate moieties			position	linear tetrasaccharide carbohydrate moieties					position	Psolusosides E (2), F (3), and G (4) contain holostane aglycones identical to each other and differ in their sugar compositions and the quantity and position of sulfate groups in linear tetrasaccharide carbohydrate moieties.
31848088	6	5	part_of	PEI-β-CD	1633:1640	arg1	Fe3O4-g-CN@PEI-β-CD nanocomposite	-CD		Fe3O4-g-CN@PEI-β-CD nanocomposite		PUBTATOR	Site	-CD	65057	nanocomposite	The comparison of the models indicated good predictions of all, however, the BRT model was more accurate compared to the others, with R2 = 0.9992, RMSE = 0.0026, MAE = 0.0014, and AAD = 0.0028, proving that it is a powerful approach for modeling TC adsorption by Fe3O4-g-CN@PEI-β-CD nanocomposite.
30690438	9	43	gly	used	1697:1700	arg2	the mHA@Chi-g-PMMA composite			the mHA@Chi-g-PMMA composite						composite	These experimental results demonstrated that the mHA@Chi-g-PMMA composite can be utilized as a scaffold for bone cells ingrowth and also be used for drug delivery during the bone repairing.
30690438	9	65	gly	utilized	1638:1645	arg2	the mHA@Chi-g-PMMA composite			the mHA@Chi-g-PMMA composite						composite	These experimental results demonstrated that the mHA@Chi-g-PMMA composite can be utilized as a scaffold for bone cells ingrowth and also be used for drug delivery during the bone repairing.
30797108	2	61	part_of	Chit-Naf	562:569	arg1	Chit-Naf composite	Chit		Chit-Naf composite		PUBTATOR	Site	Chit	1118	composite	The electrochemical impedance spectroscopy (EIS) investigations surprisingly revealed that the glassy carbon electrode (GC) electrode modified with Chit-Naf composite had higher electron transfer kinetics compared the bare GC, GC/Naf and GC/Chit electrodes, which promises a great potential as an efficient platform in construction of biosensing assays.
30518374	2	41	gly	sialylation	508:518	arg1	cerebral glycoproteins	cerebral glycoproteins				Fterm		glycoproteins			In this study, we demonstrate how neonatal neuroinflammation following postnatal E. coli lipopolysaccharide (LPS) exposure in rat pups results in persistent reduction in sialylation of cerebral glycoproteins.
30518374	2	76	gly	glycoproteins	532:544	arg1	sialylation	glycoproteins			sialylation	Fterm		glycoproteins			In this study, we demonstrate how neonatal neuroinflammation following postnatal E. coli lipopolysaccharide (LPS) exposure in rat pups results in persistent reduction in sialylation of cerebral glycoproteins.
31544955	2	47	gly	glycoproteins	237:249	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			Human cells produce glycoproteins that include α-2,3 and α-2,6 sialic acids.
31332537	4	23	gly	α-chitin	631:638	arg1	the GlcNAc bioproduction	α-chitin			the GlcNAc bioproduction	Fterm		α-chitin			In this study we demonstrate the GlcNAc bioproduction from colloidal α-chitin using an enzyme cocktail containing endochitinases and exochitinases (chitobiosidases and N-acetyl-glucosaminidases).
29215790	1	61	gly	fucosylated	191:201	arg1	sialyl-Lewis X/A				sialyl-Lewis X/A						Breast cancer tissue overexpresses fucosylated glycans, such as sialyl-Lewis X/A (sLeX/A ), and α-1,3/4-fucosyltransferases (FUTs) in relation to increased disease progression and metastasis.
29215790	1	61	gly	fucosylated	191:201	arg1	fucosylated glycans				fucosylated glycans						Breast cancer tissue overexpresses fucosylated glycans, such as sialyl-Lewis X/A (sLeX/A ), and α-1,3/4-fucosyltransferases (FUTs) in relation to increased disease progression and metastasis.
29735050	6	45	part_of	proteins	902:909	arg1	R2 = 0.83	proteins		R2 = 0.83		Fterm	SpecificSite	proteins		R2 	Increasing temperature from 115 to 165 °C decreased proteins soluble in SDS from 95 to 35% (R2 = 0.83) of total proteins, whereas the proteins soluble in DTE increased from 5 to 45% (R2 = 0.75) of total proteins.
31324524	5	17	part_of	strain	797:802	arg1	the cell wall composition	strain		the cell wall composition		Fterm	Site	strain		position	Dendritic cells (DC) are professional antigen presenting cells whose maturation can vary depending on the cell wall composition of each particular Mtb strain being critical for the onset of the immune response against Mtb.
31248580	3	86	gly	attached	509:516	arg1	membrane proteins AND glycan chains	membrane proteins			glycan chains	Fterm		proteins			Sialic acids are widely allocated at the outermost ends of glycan chains, attached to membrane proteins and lipids below.
30902717	2	47	part_of	HCCS	410:413	arg1	The prepared magnetic Fe3O4@HCCS composite	HCCS		The prepared magnetic Fe3O4@HCCS composite		OGER	Site	HCCS	P53701	composite	The prepared magnetic Fe3O4@HCCS composite possesses an enhanced defluoridation capacity (DC) of 6.8mg/g compared to hydrocalumite (HC) which possesses the DC of 2.4mg/g.
31525601	4	63	part_of	PCL/CHT	993:999	arg1	the PCL/CHT blend composition	CHT		the PCL/CHT blend composition		OGER	Site	CHT	Q9GZV3	position	We varied the mean macrovoid size, effective surface area and surface morphology by varying the PCL/CHT blend composition (100/0, 90/10, 80/20, 70/30).
35021376	6	45	gly	glycoprotein	897:908	arg1	The optimized glycoprotein microarray platform	The optimized glycoprotein microarray platform				Fterm		glycoprotein			The optimized glycoprotein microarray platform describes specific lectin-recognition patterns of glycoproteins of interest in E. coil lysate and fetal bovine serum (FBS), which encourages us for direct monitoring of glycan patterns from human sera without tedious sample preparation.
35021376	6	70	gly	glycoproteins	980:992	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			The optimized glycoprotein microarray platform describes specific lectin-recognition patterns of glycoproteins of interest in E. coil lysate and fetal bovine serum (FBS), which encourages us for direct monitoring of glycan patterns from human sera without tedious sample preparation.
30903686	2	3	gly	glycosylation	456:468	arg2	glycosylation sites			glycosylation sites						sites	However, due to the poor ionization efficiency and microheterogeneity of glycopeptides identifying glycosylation sites is a challenging task, and there is a demand for computational methods.
30903686	2	11	gly	glycopeptides	430:442	arg2	glycopeptides			glycopeptides						glycopeptides	However, due to the poor ionization efficiency and microheterogeneity of glycopeptides identifying glycosylation sites is a challenging task, and there is a demand for computational methods.
30903686	2	16	gly	microheterogeneity	408:425	arg1	glycopeptides			glycopeptides						glycopeptides	However, due to the poor ionization efficiency and microheterogeneity of glycopeptides identifying glycosylation sites is a challenging task, and there is a demand for computational methods.
31853645	8	25	gly	used	1060:1063	arg2	The composite			The composite						composite	The composite was used to construct a CL assay for tetracycline.
31284011	1	25	gly	used	246:249	arg2	A magnetic chitosan-based biocomposite			A magnetic chitosan-based biocomposite						biocomposite	A magnetic chitosan-based biocomposite, MnFe2O4@GO@Chitosan/Cu, was prepared and used as an efficient heterogeneous catalyst for the synthesis of triazoles.
29440901	0	78	part_of	BMP2-related	111:122	arg1	BMP2-related peptide	BMP2		BMP2-related peptide		PUBTATOR	Site	BMP2	29373	peptide	Guided osteoporotic bone regeneration with composite scaffolds of mineralized ECM/heparin membrane loaded with BMP2-related peptide.
31075335	2	49	part_of	CDF	357:359	arg1	The newly synthesized magnetic nanocomposite	CDF		The newly synthesized magnetic nanocomposite		OGER	Site	CDF	P05231	nanocomposite	The newly synthesized magnetic nanocomposite (CDF@MF) was characterized using several analytical techniques including Fourier transform infrared spectroscopy (FTIR), scanning electron microscopy (SEM), transmission electron microscopy (TEM), and X-ray diffraction (XRD) and etc.
35021376	3	75	gly	glycoproteins	338:350	arg1	glycan patterns	glycoproteins			glycan patterns	Fterm		glycoproteins			Therefore, direct monitoring of glycan patterns of glycoproteins is closely related to cancer progression as well as metastasis.
30794378	4	4	gly	glycosylated	713:724	arg1	glycosylated peptides			glycosylated peptides						peptides	The introduction of carrageenan provided the composite not only a perfect surface charge but also a greater ability to enrich glycosylated peptides.
30035760	10	64	gly	glycoproteins	1568:1580	arg1	mammalian glycoproteins	mammalian glycoproteins				Fterm		glycoproteins			The experimental protocols discussed here hold promise for the characterization of mammalian glycoproteins to give insight into their function and investigate the mechanism of action of therapeutics.
29391424	2	51	gly	glycopeptide	239:250	arg2	intact glycopeptide mass spectra			intact glycopeptide mass spectra						glycopeptide	We present an approach for automated annotation of intact glycopeptide mass spectra.
31334644	2	6	gly	sialylated	427:436	arg1	sialylated oligosaccharides	HMOs			sialylated oligosaccharides	OGER		HMOs			However, a detailed analysis of HMOs is difficult because neutral oligosaccharides (NHMOs) are mixed with sialylated oligosaccharides (SHMOs) in milk.
30035760	7	51	gly	glycoprotein	1042:1053	arg1	glycoprotein binding	glycoprotein binding				Fterm		glycoprotein			We discuss protocols for studying the kinetics and thermodynamics of glycoprotein binding to biologically relevant ligands and therapeutic antibody candidates.
30337494	2	52	part_of	chitin	368:373	arg1	molecular composition	chitin		molecular composition		Fterm	Site	chitin		position	However, bona fide immune receptors directly binding chitin and signaling immune activation and inflammation have not been clearly identified because polymeric crude chitin with unknown purity and molecular composition has been used.
29391424	5	70	part_of	containing	646:655	arg1	257 glycoproteins AND 970 unique glycosylation sites	257 glycoproteins		970 unique glycosylation sites		Fterm	Site	glycoproteins		sites	In a large-scale study, a total of 257 glycoproteins containing 970 unique glycosylation sites and 3447 non-redundant N-linked glycopeptide variants were identified in 24 serum samples.
29995974	0	62	gly	residues	13:20	arg1	the lipopolysaccharide exporter			residues in	the lipopolysaccharide exporter					residues in	A cluster of residues in the lipopolysaccharide exporter that selects substrate variants for transport to the outer membrane.
31482162	7	20	gly	glycopeptide	1253:1264	arg2	glycopeptide			glycopeptide						glycopeptide	Thus, membrane protection for preventing osmotic stress and ice injury could be boosted via synergistic interaction between the glycopeptide and trehalose.
30950465	0	7	part_of	Impact	0:5	arg1	the chemical composition	Impact		the chemical composition		OGER	Site	Impact	Q9P2X3	position,	Impact of in vitro gastrointestinal digestion on the chemical composition, bioactive properties, and cytotoxicity of Vitis vinifera L. cv.
30794378	9	47	gly	glycopeptides	1647:1659	arg2	glycopeptides enrichment			glycopeptides enrichment						glycopeptides	It also performed a higher sensitivity (1 fmol/μL IgG), a better enrichment capacity (up to ∼300 mg/g), and an ideal enrichment recovery (90.8% and 109.5%) for glycopeptides enrichment, indicating a great potential for the application of glycoproteomic research.
31945552	4	36	part_of	MWCNT-CNC/ZnO	835:847	arg1	MWCNT-CNC/ZnO NR nanocomposite	MWCNT-CNC		MWCNT-CNC/ZnO NR nanocomposite		OGER	Site	MWCNT-CNC	P32418	nanocomposite	The UV-Vis spectroscopy studies confirmed the presence of native hemin on MWCNT-CNC/ZnO NR nanocomposite.
31544955	5	37	gly	di-sialylated	787:799	arg1	bi-antennary di-sialylated glycans				bi-antennary di-sialylated glycans						Both 23BChE and 26BChE exhibited comparable antennarity distributions with bi-antennary di-sialylated glycans representing the most abundant glycoform.
30901847	3	1	part_of	composition	373:383	arg1	an enzyme	enzyme		composition		Fterm	Site	enzyme		position,	To this aim, the phenolic composition, the activity on protein tyrosine phosphatase 1B (PTP1B), an enzyme overexpressed in type-II diabetes, the in vitro prebiotic properties on Lactobacillus reuteri and the microbial composition were investigated.
30901847	3	12	part_of	composition	565:575	arg1	an enzyme	enzyme		composition		Fterm	Site	enzyme		position	To this aim, the phenolic composition, the activity on protein tyrosine phosphatase 1B (PTP1B), an enzyme overexpressed in type-II diabetes, the in vitro prebiotic properties on Lactobacillus reuteri and the microbial composition were investigated.
30901847	3	1	part_of	composition	373:383	arg1	protein tyrosine phosphatase 1B	1B (PTP1B		position,		PUBTATOR	Site	1B (PTP1B	5770	position,	To this aim, the phenolic composition, the activity on protein tyrosine phosphatase 1B (PTP1B), an enzyme overexpressed in type-II diabetes, the in vitro prebiotic properties on Lactobacillus reuteri and the microbial composition were investigated.
30901847	3	12	part_of	composition	565:575	arg1	protein tyrosine phosphatase 1B	1B (PTP1B		position		PUBTATOR	Site	1B (PTP1B	5770	position	To this aim, the phenolic composition, the activity on protein tyrosine phosphatase 1B (PTP1B), an enzyme overexpressed in type-II diabetes, the in vitro prebiotic properties on Lactobacillus reuteri and the microbial composition were investigated.
30663787	5	5	part_of	TMA-LA/CP	1054:1062	arg1	buffer composition	TMA-LA/CP		buffer composition		PUBTATOR	Site	TMA-LA/CP	1356	position	Several crucial parameters such as type and proportion of organic modifier, buffer composition and pH, and concentration of TMA-LA/CP were systematically investigated to achieve satisfied enantioseparation.
31147012	2	51	gly	used	421:424	arg2	pulse electrochemical deposition			pulse electrochemical deposition						position	In this research, pulse electrochemical deposition was used as a method to make chitosan regulate Ag+ and Ca2+ in situ, achieving ions' dual regulations and coprecipitation of HA nanoparticles (HA-NPs) and Ag nanoparticles (Ag-NPs) on the surface of Ti.
30851844	6	19	part_of	sites	1297:1301	arg1	191 glycoproteins	glycoproteins		sites		Fterm	Site	glycoproteins		sites	Using this method, we successfully identified 700 site-specific intact tryptic N-glycopeptides corresponding to 261 glycosylation sites on 191 glycoproteins from FFPE thymoma tissues.
31079452	1	3	gly	N-glycosylated	186:199	arg1	N-glycosylated peptides			N-glycosylated peptides						peptides	The leading proteomic method for identifying N-glycosylated peptides is liquid chromatography coupled with tandem fragmentation mass spectrometry (LCMS/MS) followed by spectral matching of MS/MS fragment masses to a database of possible glycan and peptide combinations.
31079452	1	84	gly	peptide	389:395	arg1	possible glycan and peptide combinations				possible glycan and peptide combinations						The leading proteomic method for identifying N-glycosylated peptides is liquid chromatography coupled with tandem fragmentation mass spectrometry (LCMS/MS) followed by spectral matching of MS/MS fragment masses to a database of possible glycan and peptide combinations.
30902717	7	28	part_of	HCCS	1097:1100	arg1	Fe3O4@HCCS composite	HCCS		Fe3O4@HCCS composite		OGER	Site	HCCS	P53701	composite	The field performance and efficiency of Fe3O4@HCCS composite was examined with the waste-water sample collected from a fluoride endemic area of Dindigul district, Tamilnadu, India using standard protocols.
31687407	1	60	part_of	KI	206:207	arg1	konjac-inulin (KI) composition	KI		konjac-inulin (KI) composition		PUBTATOR	Site	KI	21941	position,	OBJECTIVE The present study was designed to determine whether konjac and inulin extracts or their combination, konjac-inulin (KI) composition, as diet supplementary, can exert beneficial effects against type 1 diabetes and type 2 diabetes using animal models.
31462656	4	71	part_of	surface	607:613	arg1	domain 1	cell surface antigen		domain 1		PUBTATOR	Site	cell surface antigen	963	domain	Our studies further identified domain 1 of HSPG2 (perlecan) protein as the cognate cell surface antigen bound by the antibody.
31462656	4	72	part_of	protein	579:585	arg1	domain 1	protein		domain 1		Fterm	Site	protein		domain	Our studies further identified domain 1 of HSPG2 (perlecan) protein as the cognate cell surface antigen bound by the antibody.
31462656	4	78	part_of	cell	602:605	arg1	domain 1	cell surface antigen		domain 1		PUBTATOR	Site	cell surface antigen	963	domain	Our studies further identified domain 1 of HSPG2 (perlecan) protein as the cognate cell surface antigen bound by the antibody.
30350625	9	3	gly	glycoproteins	1360:1372	arg1	38 glycoproteins	38 glycoproteins				Fterm		glycoproteins			This method was applied to analyze human serum, which resulted in the identification of 59 O-GalNAc modified peptide sequences corresponding to 38 glycoproteins from 50 μL of serum.
30350625	9	62	gly	peptide	1322:1328	arg1	59 O-GalNAc modified peptide sequences				59 O-GalNAc modified peptide sequences						This method was applied to analyze human serum, which resulted in the identification of 59 O-GalNAc modified peptide sequences corresponding to 38 glycoproteins from 50 μL of serum.
31393229	8	33	part_of	CGB	1471:1473	arg1	prepared CGB nanocomposites	CGB		prepared CGB nanocomposites		PUBTATOR	Site	CGB	93659	nanocomposites	The above results suggested that prepared CGB nanocomposites had the potential to be applied in bone tissue engineering.
30508655	0	47	part_of	ECM-derived	52:62	arg1	ECM-derived peptides	ECM		ECM-derived peptides		OGER	Site	ECM	Q13201	peptides	Functionalization of hyaluronic acid hydrogels with ECM-derived peptides to control myoblast behavior.
31212920	2	79	part_of	HMOs	370:373	arg1	HMOs composition	HMOs		HMOs composition		OGER	Site	HMOs	P00540	position	HMOs composition is very individualized and differences in HMOs concentrations may affect the infant's health.
30719912	2	67	part_of	globulin	388:395	arg1	pepsin-released peptides	globulin		pepsin-released peptides		Fterm	Site	globulin		peptides	This study aimed to investigate the modulation of pepsin-released peptides of soybean 7S globulin on gut microbiota and possible association between changes of gut microbiota composition and lipopolysaccharide (LPS)-peptide interaction.
30035760	8	21	gly	glycoproteins	1145:1157	arg1	Recombinant glycoproteins	Recombinant glycoproteins				Fterm		glycoproteins			Recombinant glycoproteins produced in HEK293S cells are amenable to crystallization due to glycan homogeneity, reduced flexibility and susceptibility to endoglycosidase H treatment.
29055059	13	31	gly	glycosylation	2286:2298	arg1	a therapeutic protein	a therapeutic protein				Fterm		protein			This technique is immediately relevant to the characterisation of individual proteins or biological samples of low complexity, as demonstrated for the analysis of the glycosylation status of a therapeutic protein.
32255017	4	28	part_of	CDs-3D-PG-Pd	692:703	arg1	The obtained CDs-3D-PG-Pd@Au NCs composite	CDs		The obtained CDs-3D-PG-Pd@Au NCs composite		OGER	Site	CDs	Q92903	composite	The obtained CDs-3D-PG-Pd@Au NCs composite was utilized as signal amplification labels.
32255017	4	70	part_of	NCs	708:710	arg1	The obtained CDs-3D-PG-Pd@Au NCs composite	NCs		The obtained CDs-3D-PG-Pd@Au NCs composite		OGER	Site	NCs		composite	The obtained CDs-3D-PG-Pd@Au NCs composite was utilized as signal amplification labels.
29055059	8	56	gly	glycopeptides	1395:1407	arg2	glycopeptides			glycopeptides						glycopeptides	RESULTS The results demonstrate for the first time that the use of a bbCID approach is suitable for the identification of glycopeptides and phosphopeptides based on the detection of specific diagnostic and associated precursor ions.
31107901	3	113	gly	glycoproteins	506:518	arg1	the major surface glycoproteins	the major surface glycoproteins				Fterm		glycoproteins	18972		METHODS/PRINCIPLE FINDINGS Here we showed that Gp35/50 kDa mucins, the major surface glycoproteins from T. cruzi insect-dwelling forms, are involved in parasite attachment to the internal cuticle of the triatomine rectal ampoule, a critical step leading to its differentiation into mammal-infective forms.
31491490	0	84	part_of	hip	34:36	arg1	the composition	hip		the composition		PUBTATOR	Site	hip	64399	position	Differences in the composition of hip and knee synovial fluid in osteoarthritis: a nuclear magnetic resonance (NMR) spectroscopy study of metabolic profiles.
31523960	0	10	part_of	Impact	0:5	arg1	Gut Microbiota Composition	Impact		Gut Microbiota Composition		OGER	Site	Impact	Q9P2X3	position	Impact of a Plant Sterol- and Galactooligosaccharide-Enriched Beverage on Colonic Metabolism and Gut Microbiota Composition Using an In Vitro Dynamic Model.
31162880	7	23	part_of	composition	1062:1072	arg1	β-CD	-CD		composition		PUBTATOR	Site	-CD	65057	position,	The optimized extraction, constituent composition, and encapsulation of EEO in β-CD were investigated in this study.
30560095	0	40	gly	Domain	14:19	arg1	Two Domain, Cell Wall				Two Domain, Cell Wall						Rv1288, a Two Domain, Cell Wall Anchored, Nutrient Stress Inducible Carboxyl-Esterase of Mycobacterium tuberculosis, Modulates Cell Wall Lipid.
29969488	11	41	part_of	milk	2211:2214	arg1	milk composition	milk		milk composition		PUBTATOR	Site	milk	100532204	position	CONCLUSION Changes in the microbiota transferred from mother to piglets due to the inclusion of RS in the maternal diet are rather limited even though milk composition was affected.
30518374	7	24	gly	glycoproteins	1273:1285	arg1	brain glycoproteins	brain glycoproteins				Fterm		glycoproteins			At both P4 and P24, sialylation of N-glycans on brain glycoproteins decreased according to both mass-spectrometry analysis and lectin blotting, but the ganglioside composition remained intact.
30518374	7	99	gly	sialylation	1239:1249	arg1	brain glycoproteins	glycoproteins			sialylation	Fterm		glycoproteins			At both P4 and P24, sialylation of N-glycans on brain glycoproteins decreased according to both mass-spectrometry analysis and lectin blotting, but the ganglioside composition remained intact.
30518374	7	99	gly	sialylation	1239:1249	arg1	N-glycans	glycoproteins			N-glycans	Fterm		glycoproteins			At both P4 and P24, sialylation of N-glycans on brain glycoproteins decreased according to both mass-spectrometry analysis and lectin blotting, but the ganglioside composition remained intact.
30851844	5	25	gly	N-glycopeptides	1008:1022	arg2	the intact N-glycopeptides analysis			the intact N-glycopeptides analysis						N-glycopeptides	This is a useful tool to facilitate the intact N-glycopeptides analysis of complex protein mixtures, particularly for samples that extracted from formalin-fixed and paraffin-embedded (FFPE) tissues by SDS.
31102805	3	7	part_of	-Car-MA-INH/NHAP/RF	745:763	arg1	κ -Car-MA-INH/NHAP/RF nanocomposites	Car		κ -Car-MA-INH/NHAP/RF nanocomposites		OGER	Site	Car	P36575	nanocomposites	The polymeric system was cross linked with nanohydroxyapatite (NHAP) via electrostatic interaction followed by the addition of rifampicin (RF) and loaded to fabricate κ -Car-MA-INH/NHAP/RF nanocomposites.
31312254	7	56	gly	N-glycosylation	1225:1239	arg1	the rhLF	rhLF		sites		OGER		rhLF	P02788	sites	Eight types of N-glycans which dominated by the GlcNAc (4) Man (3) (61.15%) and the GlcNAc (3) Man (3) (17.98%) were identified at the three typical N-glycosylation sites of the rhLF.
29391424	5	25	gly	glycosylation	668:680	arg2	970 unique glycosylation sites			970 unique glycosylation sites						sites	In a large-scale study, a total of 257 glycoproteins containing 970 unique glycosylation sites and 3447 non-redundant N-linked glycopeptide variants were identified in 24 serum samples.
29391424	5	42	gly	glycoproteins	632:644	arg1	257 glycoproteins	257 glycoproteins				Fterm		glycoproteins			In a large-scale study, a total of 257 glycoproteins containing 970 unique glycosylation sites and 3447 non-redundant N-linked glycopeptide variants were identified in 24 serum samples.
29391424	5	50	gly	glycopeptide	720:731	arg2	3447 non-redundant N-linked glycopeptide variants			3447 non-redundant N-linked glycopeptide variants						glycopeptide	In a large-scale study, a total of 257 glycoproteins containing 970 unique glycosylation sites and 3447 non-redundant N-linked glycopeptide variants were identified in 24 serum samples.
30593802	8	10	gly	used	1181:1184	arg2	The composite			The composite						composite	The composite is of high reusability and can be used effectively for six runs of decontamination of Congo red molecules and Cr(VI) ions.
30091673	7	35	part_of	GPI	1120:1122	arg1	a prerequisite	GPI		a prerequisite		OGER	Site	GPI	P06744	prerequisite	HA:E6* is de-N-glycosylated and has a full GPI-glycan structure from which dimyristoylglycerol has been removed, indicating that complete GPI removal is not a prerequisite for proteasomal degradation.
29803848	3	45	part_of	composition	698:708	arg1	growing pigs	pigs		composition		OGER	Site	pigs	Q96S52	position	The objective of this study was to characterize the short-term impact of different parenteral antibiotics administration on the composition and diversity of nasal microbial communities in growing pigs.
30210478	2	111	gly	glycoproteins	420:432	arg1	The S-layer glycoproteins	The S-layer glycoproteins				Fterm		glycoproteins			The S-layer glycoproteins are virulence factors of T. forsythia and there is evidence that protein O-glycosylation underpins the bacterium's pathogenicity.
30210478	2	111	gly	glycoproteins	420:432	arg1	virulence factors	virulence factors				Fterm		factors			The S-layer glycoproteins are virulence factors of T. forsythia and there is evidence that protein O-glycosylation underpins the bacterium's pathogenicity.
31669466	9	3	part_of	Ag-TiO2/Al2O3/CS	1480:1495	arg1	2D Ag-TiO2/Al2O3/CS nano-composite	CS		2D Ag-TiO2/Al2O3/CS nano-composite		PUBTATOR	Site	CS	1431	nano-composite	This work suggests 2D Ag-TiO2/Al2O3/CS nano-composite for the fast removal of nitrate in drinking water treatment.
30692173	9	93	gly	sialylated	1643:1652	arg1	sialylated lipooligosaccharide				sialylated lipooligosaccharide						C. coli harbors a large set of genes associated with lipooligosaccharide biosynthesis, including genes for several putative glycosyltransferases involved in the synthesis of sialylated lipooligosaccharide in Campylobacter jejuni In the present study, C. coli was found to express lipooligosaccharide structures containing sialic acid and other nonulosonate acids.
31676555	3	23	gly	glycoproteins	527:539	arg1	O-mannosylated glycoproteins	O-mannosylated glycoproteins				Fterm		glycoproteins			These findings uncover the presence of a possible regulated degradation pathway for O-mannosylated glycoproteins.
31676555	3	24	gly	O-mannosylated	512:525	arg1	O-mannosylated glycoproteins	O-mannosylated glycoproteins				Fterm		glycoproteins			These findings uncover the presence of a possible regulated degradation pathway for O-mannosylated glycoproteins.
31945552	5	64	part_of	MWCNT-CNC/ZnO	995:1007	arg1	hemin immobilised MWCNT-CNC/ZnO NR nanocomposite	MWCNT-CNC		hemin immobilised MWCNT-CNC/ZnO NR nanocomposite		OGER	Site	MWCNT-CNC	P32418	nanocomposite	Cyclic voltammetry studies revealed that an enhanced redox electrochemical behaviour of hemin was observed on hemin immobilised MWCNT-CNC/ZnO NR nanocomposite than that of other hemin modified electrodes.
31945552	3	81	gly	used	684:687	arg2	The stable hemin bio-composites			The stable hemin bio-composites						bio-composites	The stable hemin bio-composites also were prepared using the bath sonication (37 kHz of frequency, 150 W of power) method, and was used for the selective and ultrasensitive electrochemical detection of H2O2.
30398401	4	47	part_of	ECM	790:792	arg1	the native ECM composition	ECM		the native ECM composition		OGER	Site	ECM	Q13201	position	However, the decellularization process may affect the retention of specific components, and the choice of a proper detergent is fundamental in preserving the native ECM composition.
30794378	5	29	gly	glycopeptides	748:760	arg2	Thirty-four glycopeptides			Thirty-four glycopeptides						glycopeptides	Thirty-four glycopeptides from human serum immunoglobulin G (IgG) tryptic digests were obviously observed with greatly improved signal-to-noise (S/N) ratio.
30033277	9	7	part_of	CNT-β-CD-HPG	1326:1337	arg1	CNT-β-CD-HPG composites	-CD		CNT-β-CD-HPG composites		PUBTATOR	Site	-CD	65057	composites	Then, we further verify that CNT-β-CD-HPG composites possess the remarkable water dispersibility and enormous potential for controlled drug delivery systems.
30407903	5	8	gly	C16 	801:804	arg1	C18 			C18 						C18 	The major polar lipids were diphosphatidylglycerol and phosphatidylglycerol, and the major fatty acids were C16 : 0 (18.5 %), C16 : 0 (18.0 %) and C18 : 1cis 9 (16.2 %).
30407903	5	8	gly	C16 	801:804	arg1	C16 			C16 						C16 	The major polar lipids were diphosphatidylglycerol and phosphatidylglycerol, and the major fatty acids were C16 : 0 (18.5 %), C16 : 0 (18.0 %) and C18 : 1cis 9 (16.2 %).
31669466	2	57	part_of	Ag-TiO2/Al2O3/CS	362:377	arg1	ultra-thin 2-dimensional Ag-TiO2/γ-Al2O3/Chitosan (Ag-TiO2/Al2O3/CS) nano-composite	CS		ultra-thin 2-dimensional Ag-TiO2/γ-Al2O3/Chitosan (Ag-TiO2/Al2O3/CS) nano-composite		PUBTATOR	Site	CS	1431	nano-composite	In this study, ultra-thin 2-dimensional Ag-TiO2/γ-Al2O3/Chitosan (Ag-TiO2/Al2O3/CS) nano-composite was synthesized for the fast reduction of nitrate under UVA irradiation from aqueous solutions.
30242779	1	58	gly	composition	235:245	arg1	prolific D'man sheep			position	prolific D'man sheep					position	This work aimed to investigate milk potentiality and the influence of some non-genetic factors both on milk yield production and composition in prolific D'man sheep.
30648942	4	37	part_of	rpoB	783:786	arg1	concatenated sequences	rpoB, cpn60		concatenated sequences		OGER	Site	rpoB, cpn60	P10809	sequences	Phylogenetic analysis based on 16S rRNA gene sequences showed that strain M46T was affiliated to the genus Sphingobacterium, exhibiting the highest sequence similarity of 97.9 % to Sphingobacterium ginsenosidimutans THG 07T, Sphingobacterium canadense CR11T and Sphingobacterium detergens6.2 ST. Multilocus sequence analysis (MLSA) based on concatenated sequences of the rpoB, cpn60 and 16S rRNA genes showed that strain M46T clustered together with S. canadense CR11T.
30350625	1	11	gly	glycoproteins	185:197	arg1	various N-linked and O-linked glycoproteins	various N-linked and O-linked glycoproteins				Fterm		glycoproteins			Human serum is a complex body fluid that contains various N-linked and O-linked glycoproteins.
31102805	0	49	part_of	κ-Car-MA-INH/Nano	43:59	arg1	κ-Car-MA-INH/Nano hydroxyapatite composite	Car		κ-Car-MA-INH/Nano hydroxyapatite composite		OGER	Site	Car	P36575	composite	Fabrication of bioactive rifampicin loaded κ-Car-MA-INH/Nano hydroxyapatite composite for tuberculosis osteomyelitis infected tissue regeneration.
29391424	0	9	gly	glycopeptide	19:30	arg2	Large-scale intact glycopeptide identification			Large-scale intact glycopeptide identification						glycopeptide	Large-scale intact glycopeptide identification by Mascot database search.
29391424	3	32	gly	glycoprotein	469:480	arg1	custom glycoprotein databases	custom glycoprotein databases				Fterm		glycoprotein			The steps in adopting the Mascot search engine for intact glycopeptide analysis included: (i) assigning one letter codes for monosaccharides, (ii) linearizing glycan sequences and (iii) preparing custom glycoprotein databases.
29391424	3	65	gly	glycopeptide	324:335	arg2	intact glycopeptide analysis			intact glycopeptide analysis						glycopeptide	The steps in adopting the Mascot search engine for intact glycopeptide analysis included: (i) assigning one letter codes for monosaccharides, (ii) linearizing glycan sequences and (iii) preparing custom glycoprotein databases.
31195757	7	58	gly	sialylated	939:948	arg1	sialylated oligosaccharides				sialylated oligosaccharides						The concentrations of a number of sialylated oligosaccharides were also different in preterm milk, in particular 3'-sialyllactose concentrations were elevated.
30797481	11	30	gly	sites	1288:1292	arg1	Bman26			sites	Bman26					sites	In addition, three amino acid sites (Gly88-Leu212-Lys288) in Bman26 were found to have close relationships with the enzyme's thermal stability.
31228462	16	14	part_of	ECM	2130:2132	arg1	ECM composition	ECM		ECM composition		OGER	Site	ECM	Q13201	position	This multidisciplinary study of the stromal wound healing process revealed changes in corneal transmittance, collagen organization, myofibroblasts presence and ECM composition at 1, 3, and 6 months after alkali burning.
30903686	0	62	gly	N-	23:24	arg1	sites			sites						sites	SPRINT-Gly: predicting N- and O-linked glycosylation sites of human and mouse proteins by using sequence and predicted structural properties.
30903686	0	73	gly	glycosylation	39:51	arg1	human and mouse proteins	human and mouse proteins				Fterm		proteins			SPRINT-Gly: predicting N- and O-linked glycosylation sites of human and mouse proteins by using sequence and predicted structural properties.
31887952	3	28	part_of	multi-layered	677:689	arg1	the multi-layered coating composition	multi		the multi-layered coating composition		OGER	Site	multi		position	The results showed that most of the drug is released in the first six hours, whereas the overall released amount could be tailored through changes in the multi-layered coating composition.
30851844	6	14	gly	glycosylation	1283:1295	arg2	261 glycosylation sites			261 glycosylation sites						sites	Using this method, we successfully identified 700 site-specific intact tryptic N-glycopeptides corresponding to 261 glycosylation sites on 191 glycoproteins from FFPE thymoma tissues.
30851844	6	18	gly	glycoproteins	1310:1322	arg1	191 glycoproteins	191 glycoproteins				Fterm		glycoproteins			Using this method, we successfully identified 700 site-specific intact tryptic N-glycopeptides corresponding to 261 glycosylation sites on 191 glycoproteins from FFPE thymoma tissues.
30851844	6	29	gly	N-glycopeptides	1246:1260	arg2	700 site-specific intact tryptic N-glycopeptides			700 site-specific intact tryptic N-glycopeptides						N-glycopeptides	Using this method, we successfully identified 700 site-specific intact tryptic N-glycopeptides corresponding to 261 glycosylation sites on 191 glycoproteins from FFPE thymoma tissues.
31162876	7	22	part_of	α-chain	1119:1125	arg1	fibrin α-chain fragments	-chain		fibrin α-chain fragments		PUBTATOR	Site	-chain	2217	fragments	Among the proteins identified as major discriminators between citrate and the other regimens, fibrin α-chain fragments of molecular weight below 40 kDa prevailed.
31482162	2	55	gly	glycopeptides	357:369	arg2	glycopeptides			glycopeptides						glycopeptides	Introduction of biocompatible cryoprotective agents is promising for cell cryopreservation based on membrane stabilization of glycopeptides and trehalose.
31277502	4	120	part_of	composition	519:529	arg1	HM	HM		composition		Cterm	Site	HM	100532204	position	AIMS To analyze and compare macronutrient composition in HM of mothers lactating very preterm (PT) (28 0/7 to 32 6/7 weeks of gestational age, GA) and term (T) infants (37 0/7 to 41 6/7 weeks of GA) over time, both at similar postnatal and postmenstrual ages, and to investigate other potential factors of variations.
30518374	10	58	gly	sialoglycoproteins	1862:1879	arg1	sialoglycoproteins	sialoglycoproteins				Fterm		sialoglycoproteins			Considering the important roles played by sialoglycoproteins in CNS function, we speculate that observed re-programming of the brain sialome constitutes an important part of pathophysiological consequences in perinatal infectious exposure.
31350933	11	59	part_of	pectin	1663:1668	arg1	pectin composition	pectin		pectin composition		Fterm	Site	pectin		position	It is hypothesised that changes in pectin composition are sensed by the CpGRP1-CpWAK1 complex therefore leading to the activation of dehydration-related responses and leaf folding.
30033277	10	8	part_of	CNT-β-CD-HPG	1508:1519	arg1	CNT-β-CD-HPG composites	-CD		CNT-β-CD-HPG composites		PUBTATOR	Site	-CD	65057	composites	Therefore the facile strategy for the preparation of CNT-β-CD-HPG composites with excellent water dispersibility via supramolecular chemistry would possess rosy prospects in biomedical applications.
30518374	0	59	gly	sialylation	24:34	arg1	cerebral glycoproteins	cerebral glycoproteins				Fterm		glycoproteins			Persistent reduction in sialylation of cerebral glycoproteins following postnatal inflammatory exposure.
30518374	0	104	gly	glycoproteins	48:60	arg1	cerebral glycoproteins	glycoproteins			sialylation	Fterm		glycoproteins			Persistent reduction in sialylation of cerebral glycoproteins following postnatal inflammatory exposure.
30797108	1	15	part_of	chitosan-Nafion	185:199	arg1	chitosan-Nafion (Chit-Naf) composite	chitosan-Nafion (Chit		chitosan-Nafion (Chit-Naf) composite		PUBTATOR	Site	chitosan-Nafion (Chit	1118	composite	In the present work, for the first time we takes the advantages of chitosan-Nafion (Chit-Naf) composite as a highly conductive surface platform and a novel CNT-based signal amplification strategy to develop a lable-free impedimetricaptamer-based sensor for highly sensitive detection of As(III).
30797108	1	84	part_of	Chit-Naf	202:209	arg1	chitosan-Nafion (Chit-Naf) composite	chitosan-Nafion (Chit		chitosan-Nafion (Chit-Naf) composite		PUBTATOR	Site	chitosan-Nafion (Chit	1118	composite	In the present work, for the first time we takes the advantages of chitosan-Nafion (Chit-Naf) composite as a highly conductive surface platform and a novel CNT-based signal amplification strategy to develop a lable-free impedimetricaptamer-based sensor for highly sensitive detection of As(III).
30350625	2	31	gly	glycoproteins	257:269	arg1	the serum O-linked glycoproteins	the serum O-linked glycoproteins				Fterm		glycoproteins			Compared with N-linked glycoproteins, the serum O-linked glycoproteins are not well-studied due to their high heterogeneity and their low abundance.
30350625	2	63	gly	glycoproteins	223:235	arg1	N-linked glycoproteins	N-linked glycoproteins				Fterm		glycoproteins			Compared with N-linked glycoproteins, the serum O-linked glycoproteins are not well-studied due to their high heterogeneity and their low abundance.
29432560	1	122	part_of	NDF	243:245	arg1	nutrient composition	NDF		nutrient composition		OGER	Site	NDF	Q49A26	position	This experiment was designed to determine nutrient composition and apparent total tract digestibility (ATTD) of GE, DM, OM, and NDF and the concentration of DE and ME in 10 sources of wheat middlings and in 1 source of red dog that were obtained from different flour mills in the United States.
31987167	8	50	gly	glycoproteins	1316:1328	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			The CPBA-Ni6PW9/SA hybrid is practically applied for the enrichment of glycoproteins from human serum.
30940835	3	32	gly	glycopeptide	672:683	arg2	an isotopically double-labeled Aβ1-15 glycopeptide			an isotopically double-labeled Aβ1-15 glycopeptide						glycopeptide	We report here on the synthesis and use of an isotopically double-labeled Aβ1-15 glycopeptide, carrying the core 1 Galβ3GalNAcα1-O-Tyr-10 structure, to (1) identify by HCD LC-MS/MS the definite glycan core 1 structure of immunopurified and desialylated Aβ glycopeptides in human CSF and to (2) establish a LC-MS/MS quantification method for desialylated Aβ1-15 (and Aβ1-17) glycopeptides and to (3) compare the concentrations of these Aβ glycopeptides in CSF from 20 AD patients and 20 healthy controls.
30940835	3	63	gly	glycopeptides	1029:1041	arg2	these Aβ glycopeptides			these Aβ glycopeptides						glycopeptides	We report here on the synthesis and use of an isotopically double-labeled Aβ1-15 glycopeptide, carrying the core 1 Galβ3GalNAcα1-O-Tyr-10 structure, to (1) identify by HCD LC-MS/MS the definite glycan core 1 structure of immunopurified and desialylated Aβ glycopeptides in human CSF and to (2) establish a LC-MS/MS quantification method for desialylated Aβ1-15 (and Aβ1-17) glycopeptides and to (3) compare the concentrations of these Aβ glycopeptides in CSF from 20 AD patients and 20 healthy controls.
30940835	3	79	gly	desialylated	831:842	arg1	immunopurified and desialylated Aβ glycopeptides			immunopurified and desialylated Aβ glycopeptides						glycopeptides	We report here on the synthesis and use of an isotopically double-labeled Aβ1-15 glycopeptide, carrying the core 1 Galβ3GalNAcα1-O-Tyr-10 structure, to (1) identify by HCD LC-MS/MS the definite glycan core 1 structure of immunopurified and desialylated Aβ glycopeptides in human CSF and to (2) establish a LC-MS/MS quantification method for desialylated Aβ1-15 (and Aβ1-17) glycopeptides and to (3) compare the concentrations of these Aβ glycopeptides in CSF from 20 AD patients and 20 healthy controls.
30940835	3	101	gly	glycopeptides	965:977	arg2	desialylated Aβ1-15 (and Aβ1-17) glycopeptides			desialylated Aβ1-15 (and Aβ1-17) glycopeptides						glycopeptides	We report here on the synthesis and use of an isotopically double-labeled Aβ1-15 glycopeptide, carrying the core 1 Galβ3GalNAcα1-O-Tyr-10 structure, to (1) identify by HCD LC-MS/MS the definite glycan core 1 structure of immunopurified and desialylated Aβ glycopeptides in human CSF and to (2) establish a LC-MS/MS quantification method for desialylated Aβ1-15 (and Aβ1-17) glycopeptides and to (3) compare the concentrations of these Aβ glycopeptides in CSF from 20 AD patients and 20 healthy controls.
30940835	3	93	gly	carrying	686:693	arg1	an isotopically double-labeled Aβ1-15 glycopeptide AND the core 1 Galβ3GalNAcα1-O-Tyr-10 structure			an isotopically double-labeled Aβ1-15 glycopeptide	the core 1 Galβ3GalNAcα1-O-Tyr-10 structure					glycopeptide	We report here on the synthesis and use of an isotopically double-labeled Aβ1-15 glycopeptide, carrying the core 1 Galβ3GalNAcα1-O-Tyr-10 structure, to (1) identify by HCD LC-MS/MS the definite glycan core 1 structure of immunopurified and desialylated Aβ glycopeptides in human CSF and to (2) establish a LC-MS/MS quantification method for desialylated Aβ1-15 (and Aβ1-17) glycopeptides and to (3) compare the concentrations of these Aβ glycopeptides in CSF from 20 AD patients and 20 healthy controls.
30940835	3	88	gly	glycopeptides	847:859	arg1	the definite glycan core 1 structure			glycopeptides	the definite glycan core 1 structure					glycopeptides	We report here on the synthesis and use of an isotopically double-labeled Aβ1-15 glycopeptide, carrying the core 1 Galβ3GalNAcα1-O-Tyr-10 structure, to (1) identify by HCD LC-MS/MS the definite glycan core 1 structure of immunopurified and desialylated Aβ glycopeptides in human CSF and to (2) establish a LC-MS/MS quantification method for desialylated Aβ1-15 (and Aβ1-17) glycopeptides and to (3) compare the concentrations of these Aβ glycopeptides in CSF from 20 AD patients and 20 healthy controls.
30035760	4	16	gly	glycoprotein	616:627	arg1	mammalian glycoprotein ectodomains	mammalian glycoprotein ectodomains				Fterm		glycoprotein			We propose that these approaches are broadly applicable to the characterization of mammalian glycoprotein ectodomains containing Ig domains.
30521894	6	33	part_of	TIM-like	1089:1096	arg1	classical (α/β) TIM-like barrel motif	TIM		classical (α/β) TIM-like barrel motif		OGER	Site	TIM	Q9UNS1	motif	The tertiary structure of all the β-glucosidases was designed by homology modeling; modeled structure AtBgl1.3 (GH1), AtBgl3.1 (GH3), AtBgl5.4 (GH5), AtBgl17.1 (GH17) show classical (α/β) TIM-like barrel motif.
30903686	5	78	gly	glycoproteins	1013:1025	arg1	human glycoproteins	human glycoproteins				Fterm		glycoproteins			For N-glycosylation, a mouse-trained model performs equally well in human glycoproteins and vice versa, however, due to significant differences in O-linked sites separate models were generated.
30035760	9	67	gly	glycoprotein	1346:1357	arg1	glycoprotein crystals	glycoprotein crystals				Fterm		glycoprotein			We present methods for soaking glycoprotein crystals with heavy atoms and small molecules for phase determination and analysis of ligand binding, respectively.
31277502	3	39	part_of	Addressing	353:362	arg1	Addressing HM composition	Addressing HM		Addressing HM composition		Cterm	Site	Addressing HM	100532204	position	Addressing HM composition and variations is essential to optimize HM fortification strategies for these vulnerable infants.
31277502	3	111	part_of	HM	364:365	arg1	Addressing HM composition	Addressing HM		Addressing HM composition		Cterm	Site	Addressing HM	100532204	position	Addressing HM composition and variations is essential to optimize HM fortification strategies for these vulnerable infants.
31277502	16	63	part_of	HM	2363:2364	arg1	macronutrient composition	HM		macronutrient composition		Cterm	Site	HM	100532204	position	This study provides original information on macronutrient composition and variations of HM, which is important to consider for the optimization of nutrition and growth of PT infants.
30518374	4	88	gly	sialylation	818:828	arg1	cerebral glycoproteins	cerebral glycoproteins				Fterm		glycoproteins			Twenty-four hours (P4) or 21 days (P24) following injection, brains were extracted and analyzed for neuraminidase activity and expression as well as for sialylation of cerebral glycoproteins and glycolipids.
30518374	4	8	gly	glycoproteins	842:854	arg1	cerebral glycoproteins	glycoproteins			sialylation	Fterm		glycoproteins			Twenty-four hours (P4) or 21 days (P24) following injection, brains were extracted and analyzed for neuraminidase activity and expression as well as for sialylation of cerebral glycoproteins and glycolipids.
30794378	7	31	gly	glycopeptides	1315:1327	arg2	glycopeptides			glycopeptides						glycopeptides	Meanwhile, 76 glycopeptides derived from 56 glycoproteins with 83 N-glycosylation sites were identified from human serum and 149 glycopeptides derived from 129 glycoproteins with 157 N-glycosylation sites were identified from mouse liver tissues, which showed the ability to enrich glycopeptides from complex biological samples.
30794378	7	33	gly	N-glycosylation	1216:1230	arg2	157 N-glycosylation sites			157 N-glycosylation sites						sites	Meanwhile, 76 glycopeptides derived from 56 glycoproteins with 83 N-glycosylation sites were identified from human serum and 149 glycopeptides derived from 129 glycoproteins with 157 N-glycosylation sites were identified from mouse liver tissues, which showed the ability to enrich glycopeptides from complex biological samples.
30794378	7	41	gly	glycoproteins	1077:1089	arg1	56 glycoproteins	56 glycoproteins				Fterm		glycoproteins			Meanwhile, 76 glycopeptides derived from 56 glycoproteins with 83 N-glycosylation sites were identified from human serum and 149 glycopeptides derived from 129 glycoproteins with 157 N-glycosylation sites were identified from mouse liver tissues, which showed the ability to enrich glycopeptides from complex biological samples.
30794378	7	64	gly	glycopeptides	1047:1059	arg2	76 glycopeptides			76 glycopeptides						glycopeptides	Meanwhile, 76 glycopeptides derived from 56 glycoproteins with 83 N-glycosylation sites were identified from human serum and 149 glycopeptides derived from 129 glycoproteins with 157 N-glycosylation sites were identified from mouse liver tissues, which showed the ability to enrich glycopeptides from complex biological samples.
30794378	7	71	gly	glycoproteins	1193:1205	arg1	129 glycoproteins	129 glycoproteins				Fterm		glycoproteins			Meanwhile, 76 glycopeptides derived from 56 glycoproteins with 83 N-glycosylation sites were identified from human serum and 149 glycopeptides derived from 129 glycoproteins with 157 N-glycosylation sites were identified from mouse liver tissues, which showed the ability to enrich glycopeptides from complex biological samples.
30794378	7	78	gly	N-glycosylation	1099:1113	arg2	83 N-glycosylation sites			83 N-glycosylation sites						sites	Meanwhile, 76 glycopeptides derived from 56 glycoproteins with 83 N-glycosylation sites were identified from human serum and 149 glycopeptides derived from 129 glycoproteins with 157 N-glycosylation sites were identified from mouse liver tissues, which showed the ability to enrich glycopeptides from complex biological samples.
30794378	7	84	gly	glycopeptides	1162:1174	arg2	149 glycopeptides			149 glycopeptides						glycopeptides	Meanwhile, 76 glycopeptides derived from 56 glycoproteins with 83 N-glycosylation sites were identified from human serum and 149 glycopeptides derived from 129 glycoproteins with 157 N-glycosylation sites were identified from mouse liver tissues, which showed the ability to enrich glycopeptides from complex biological samples.
30794378	1	60	gly	glycopeptides	174:186	arg2	glycopeptides enrichment efficiency			glycopeptides enrichment efficiency						glycopeptides	A hydrophilic nanocomposite was synthesized by an easy route to improve glycopeptides enrichment efficiency.
29520318	1	44	gly	sialylated	137:146	arg1	sialylated glycans				sialylated glycans						Influenza virus infects cells by binding to sialylated glycans on the cell surface.
30794378	8	83	gly	glycopeptides	1459:1471	arg2	glycopeptides			glycopeptides						glycopeptides	In addition, GO-PEI-Carr exhibited a unique repeatability and stability even after enrichment of glycopeptides for 20 times.
31491490	10	5	gly	group	1385:1389	arg1	glutamine			glutamine						glutamine	Four metabolites were found in significantly greater quantities in the knee group compared to the hip group (N-acetylated molecules, glycosaminoglycans, citrate and glutamine).
30508655	11	112	part_of	laminin	1763:1769	arg1	the laminin peptide	laminin		the laminin peptide		OGER	Site	laminin		peptide	Our results indicated that HA hydrogels functionalized with the laminin peptide, IKVAV, show potential due to the enhanced promotion of myogenic cell behaviors including migration, proliferation and an increase in relevant transcription factors.
31546409	6	15	gly	utilized	1405:1412	arg2	the fabricated chitosan-coated porous PCL/BG nanocomposite			the fabricated chitosan-coated porous PCL/BG nanocomposite						nanocomposite	In conclusion, the fabricated chitosan-coated porous PCL/BG nanocomposite containing 15 wt% BG nanoparticles could be utilized as a good candidate for bone tissue engineering.
30940835	2	43	gly	sialylated	419:428	arg1	sialylated Tyr-10 O-glycosylated Aβ peptides			sialylated Tyr-10 O-glycosylated Aβ peptides						peptides	We previously identified a series of sialylated Tyr-10 O-glycosylated Aβ peptides, 15-20 residues long, from human cerebrospinal fluid (CSF) and observed a relative increase of those in AD vs non-AD patients.
30035760	4	73	part_of	glycoprotein	616:627	arg1	mammalian glycoprotein ectodomains	glycoprotein		mammalian glycoprotein ectodomains		Fterm	Site	glycoprotein		ectodomains	We propose that these approaches are broadly applicable to the characterization of mammalian glycoprotein ectodomains containing Ig domains.
30508655	15	17	part_of	laminin	2525:2531	arg1	the laminin peptide	laminin		the laminin peptide		OGER	Site	laminin		peptide	The 3% HA functionalized with the laminin peptide, IKVAV, showed the most promise for future in vivo studies, as these hydrogels best promoted myoblast cell proliferation, attachment and spreading, enhanced migration over connective tissue cells and upregulated transcription factors associated with activated satellite cells.
31079452	6	14	gly	N-glycopeptides	1394:1408	arg2	the N-glycopeptides			the N-glycopeptides						N-glycopeptides	Furthermore, MS/MS sequencing of the glycan and peptide composition of just one N-glycopeptide in the graph was sufficient to identify the rest of the N-glycopeptides in the graph.
31079452	6	74	gly	peptide	1291:1297	arg1	the glycan and peptide composition				the glycan and peptide composition						Furthermore, MS/MS sequencing of the glycan and peptide composition of just one N-glycopeptide in the graph was sufficient to identify the rest of the N-glycopeptides in the graph.
31079452	6	18	gly	N-glycopeptide	1323:1336	arg1	the glycan and peptide composition			N-glycopeptide	the glycan and peptide composition					N-glycopeptide	Furthermore, MS/MS sequencing of the glycan and peptide composition of just one N-glycopeptide in the graph was sufficient to identify the rest of the N-glycopeptides in the graph.
30280291	7	29	part_of	CBP-heparin	1095:1105	arg1	CBP-heparin composite	CBP		CBP-heparin composite		PUBTATOR	Site	CBP	1387	composite	Taken together, our results reveal that the whole kidney can be modified by CBP-heparin composite to reduce the thrombosis and provide the better conditions for neovascularization.
29763698	2	56	gly	used	335:338	arg2	The resulting alginate-CuxZn1-xO composites			The resulting alginate-CuxZn1-xO composites						composites	The resulting alginate-CuxZn1-xO composites were characterized by FTIR, SEM and XRD, then used as an efficient carrier for the antiretroviral drug (zidovudine, AZT) and exhibited remarkable antibacterial properties.
30794378	7	10	part_of	glycoproteins	1193:1205	arg1	157 N-glycosylation sites	glycoproteins		157 N-glycosylation sites		Fterm	Site	glycoproteins		sites	Meanwhile, 76 glycopeptides derived from 56 glycoproteins with 83 N-glycosylation sites were identified from human serum and 149 glycopeptides derived from 129 glycoproteins with 157 N-glycosylation sites were identified from mouse liver tissues, which showed the ability to enrich glycopeptides from complex biological samples.
30794378	7	82	part_of	glycoproteins	1077:1089	arg1	83 N-glycosylation sites	glycoproteins		83 N-glycosylation sites		Fterm	Site	glycoproteins		sites	Meanwhile, 76 glycopeptides derived from 56 glycoproteins with 83 N-glycosylation sites were identified from human serum and 149 glycopeptides derived from 129 glycoproteins with 157 N-glycosylation sites were identified from mouse liver tissues, which showed the ability to enrich glycopeptides from complex biological samples.
30383847	5	26	part_of	composition	1035:1045	arg1	P. aeruginosa PAO1	PAO1		composition		OGER	Site	PAO1	Q9NWM0	position	To further clarify the mechanism in which sulfated vizantin suppresses the flagellar motility of P. aeruginosa PAO1, we examined the effects of sulfated vizantin on the composition of the flagellar filament and mRNA expression of several flagella-related genes, finding that sulfated vizantin did not influence the composition of the flagellar complex (fliC, motA, and motB) in P. aeruginosa PAO1, but significantly decreased mRNA expression of the chemotaxis-related genes cheR1, cheW, and cheZ.
30382612	2	75	gly	glycosylated	333:344	arg1	highly glycosylated proteins	highly glycosylated proteins				Fterm		proteins			They produce mucins, highly glycosylated proteins.
32255017	4	81	gly	utilized	726:733	arg2	The obtained CDs-3D-PG-Pd@Au NCs composite			The obtained CDs-3D-PG-Pd@Au NCs composite						composite	The obtained CDs-3D-PG-Pd@Au NCs composite was utilized as signal amplification labels.
30210478	3	63	part_of	strain	729:734	arg1	the genome sequence	strain		the genome sequence		Fterm	Site	strain		sequence	To elucidate the protein O-glycosylation pathway, genes suspected of encoding pathway components were first identified in the genome sequence of the ATCC 43037 type strain, revealing a 27-kb gene cluster that was shown to be polycistronic.
30560095	8	44	gly	domains	1027:1033	arg1	Peptidoglycan binding activity				Peptidoglycan binding activity						Peptidoglycan binding activity of Rv1288 and its domains demonstrated that the Lyt domain is essential for anchoring protein to the cell wall.
30939993	5	60	part_of	rhBMP-2	710:716	arg1	the rhBMP-2 powder gel composite	rhBMP-2		the rhBMP-2 powder gel composite		OGER	Site	rhBMP-2	P12643	composite	The results showed that the rhBMP-2 powder gel composite improved the new bone formation in the cortical bone and the marrow space.
30088442	0	27	part_of	chitin/PAA	7:16	arg1	Glycol chitin/PAA hydrogel composite	chitin		Glycol chitin/PAA hydrogel composite		Fterm	Site	chitin		composite	Glycol chitin/PAA hydrogel composite incorporated bio-functionalized PLGA microspheres intended for sustained release of anticancer drug through intratumoral injection.
31482162	4	53	gly	glycopeptide	618:629	arg2	The specifically synthesized glycopeptide			The specifically synthesized glycopeptide						glycopeptide	The specifically synthesized glycopeptide demonstrated enhanced cryosurvival of sheep red blood cells (RBCs) from 49.1 ± 0.9% to 75.0 ± 2.4% at pH 7.4, along with trehalose molecules.
31102805	5	47	part_of	-Car-MA-INH/NHAP/RF	964:982	arg1	the κ -Car-MA-INH/NHAP/RF nanocomposite	Car		the κ -Car-MA-INH/NHAP/RF nanocomposite		OGER	Site	Car	P36575	nanocomposite	The zeta potential of the κ -Car-MA-INH/NHAP/RF nanocomposite was observed to be -20.04 mV using Zetasizer.
30447356	7	18	part_of	pH	948:949	arg1	large domain	pH (4-10		large domain		OGER	Site	pH (4-10	Q9NXG6	domain	The beads exhibited high adsorption stability in large domain of pH (4-10).
31785876	2	92	part_of	IgE	440:442	arg1	some IgE binding epitopes	IgE		some IgE binding epitopes		OGER	Site	IgE	P01854	epitopes	Hydrolysis of food proteins reduces their allergenicity, but another novel approach is the covalent attachment of polysaccharides to proteins via the Maillard reaction (i.e., glycation), which blocks some IgE binding epitopes on the protein allergen.
31848088	2	58	part_of	PEI-β-CD	512:519	arg1	the novel nanocomposite	-CD		the novel nanocomposite		PUBTATOR	Site	-CD	65057	nanocomposite	Herein, the novel nanocomposite (NC) of Fe3O4-g-CN@PEI-β-CD was synthesized and employed effectively for the adsorptive removal of tetracycline (TC), the second most produced and employed antibiotic around the world.
31987167	4	33	gly	glycoproteins	719:731	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			The abundant oxygen atoms in the hybrid (shortly termed as CPBA-Ni6PW9/SA) significantly reduce the pKa value of CPBA moiety, which well facilitates the selective adsorption of glycoproteins at neutral environment (at pH 7.0).
30899062	4	65	gly	fourth	609:614	arg1	glycines			glycines						glycines	FemX adds the first glycine of the cross bridge, while FemA and FemB add the second and the third, and the fourth and the fifth glycines, respectively.
29633642	6	91	part_of	A	1018:1018	arg1	composition	secretory immunoglobulin A		composition		Cterm	Site	secretory immunoglobulin A		position	The composition and metabolic activity of the faecal microbiota, and the level of secretory immunoglobulin A were determined in the stool samples.
31687407	13	71	part_of	KI	1963:1964	arg1	KI composition	KI		KI composition		PUBTATOR	Site	KI	21941	position	CONCLUSION The results of this study suggest that daily use of KI composition has a protective role on type 1 and 2 diabetes and provided experimental basis for further development of KI composition as a food supplement for diabetic or diabetic high-risk population.
31687407	13	90	part_of	KI	2084:2085	arg1	KI composition	KI		KI composition		PUBTATOR	Site	KI	21941	position	CONCLUSION The results of this study suggest that daily use of KI composition has a protective role on type 1 and 2 diabetes and provided experimental basis for further development of KI composition as a food supplement for diabetic or diabetic high-risk population.
31077380	0	70	part_of	peas	97:100	arg1	chemical composition	peas		chemical composition		OGER	Site	peas	Q9BQ90	position	Genotype and environment effects on the chemical composition and rheological properties of field peas.
31079452	8	29	gly	N-glycopeptides	1647:1661	arg2	more than 500 unique N-glycopeptides			more than 500 unique N-glycopeptides						N-glycopeptides	GlycopeptideGraphMS detected more than 500 unique N-glycopeptides from AXL, triple the number found by a database search with Byonic software, and detected incorrect assignments due to a nonspecific protease cleavage.
31987167	0	26	gly	glycoproteins	75:87	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			Boronic acid modified polyoxometalate-alginate hybrid for the isolation of glycoproteins at neutral environment.
29352487	0	26	gly	isoform	89:95	arg1	Disaccharide combinations	isoform			Disaccharide combinations	Fterm		isoform			Disaccharide combinations and the expression of enolase3 and plasma membrane Ca2+ ATPase isoform in sturgeon sperm cryopreservation.
30851844	3	0	gly	glycopeptides	602:614	arg2	lowly abundant glycopeptides			lowly abundant glycopeptides						glycopeptides	However, intact N-glycopeptide analysis still faces great challenges because the presence of highly abundant non-glycosylated peptides would suppress the ionization of lowly abundant glycopeptides.
30851844	3	5	gly	non-glycosylated	528:543	arg1	highly abundant non-glycosylated peptides			highly abundant non-glycosylated peptides						peptides	However, intact N-glycopeptide analysis still faces great challenges because the presence of highly abundant non-glycosylated peptides would suppress the ionization of lowly abundant glycopeptides.
30851844	3	7	gly	N-glycopeptide	435:448	arg2	intact N-glycopeptide analysis			intact N-glycopeptide analysis						N-glycopeptide	However, intact N-glycopeptide analysis still faces great challenges because the presence of highly abundant non-glycosylated peptides would suppress the ionization of lowly abundant glycopeptides.
29391424	1	7	gly	glycopeptides	107:119	arg2	glycopeptides			glycopeptides						glycopeptides	Workflows capable of determining glycopeptides in large-scale are missing in the field of glycoproteomics.
30064105	1	18	gly	used	190:193	arg2	The ligno-cellulose residues			The ligno-cellulose residues						residues	The ligno-cellulose residues from biorefinery production of bio-ethanol were used as woody structuring material within an on-farm composting system, with the aim to obtain bioactive water soluble and humic fractions from composted materials.
31373133	3	31	part_of	protein	529:535	arg1	a prerequisite	protein		a prerequisite		Fterm	Site	protein		prerequisite	Production of intact and functional protein is a prerequisite for large-scale protein production, and extensive host-specific post-translational modifications (PTMs) often affect the catalytic properties and stability of recombinant enzymes.
30940835	4	59	gly	glycopeptides	1349:1361	arg2	the desialylated Aβ1-15 or Aβ1-17 glycopeptides			the desialylated Aβ1-15 or Aβ1-17 glycopeptides						glycopeptides	Although we unambiguously identified the core 1 structures and Tyr-10 attachment sites of the glycopeptides, we did not observe any quantitative differences, determined through both peptide and oxonium ion fragments, of the desialylated Aβ1-15 or Aβ1-17 glycopeptides between the AD and non-AD group.
30940835	4	75	gly	glycopeptides	1189:1201	arg2	the glycopeptides			glycopeptides	core 1 structures					glycopeptides	Although we unambiguously identified the core 1 structures and Tyr-10 attachment sites of the glycopeptides, we did not observe any quantitative differences, determined through both peptide and oxonium ion fragments, of the desialylated Aβ1-15 or Aβ1-17 glycopeptides between the AD and non-AD group.
30940835	5	5	gly	glycopeptide	1473:1484	arg2	double-labeled glycopeptide standards			double-labeled glycopeptide standards						glycopeptide	The new quantitative glycoproteomic approach described, using double-labeled glycopeptide standards, will undoubtedly facilitate future studies of glycopeptides as clinical biomarkers but should also embrace sialylated Aβ standards to reveal specific sialylation patterns of individual Aβ glycopeptides in AD patients and controls.
30940835	5	24	gly	sialylation	1647:1657	arg1	individual Aβ glycopeptides			individual Aβ glycopeptides						glycopeptides	The new quantitative glycoproteomic approach described, using double-labeled glycopeptide standards, will undoubtedly facilitate future studies of glycopeptides as clinical biomarkers but should also embrace sialylated Aβ standards to reveal specific sialylation patterns of individual Aβ glycopeptides in AD patients and controls.
30940835	5	72	gly	glycopeptides	1543:1555	arg2	glycopeptides			glycopeptides						glycopeptides	The new quantitative glycoproteomic approach described, using double-labeled glycopeptide standards, will undoubtedly facilitate future studies of glycopeptides as clinical biomarkers but should also embrace sialylated Aβ standards to reveal specific sialylation patterns of individual Aβ glycopeptides in AD patients and controls.
30940835	5	92	gly	glycopeptides	1685:1697	arg2	individual Aβ glycopeptides			glycopeptides	specific sialylation patterns					glycopeptides	The new quantitative glycoproteomic approach described, using double-labeled glycopeptide standards, will undoubtedly facilitate future studies of glycopeptides as clinical biomarkers but should also embrace sialylated Aβ standards to reveal specific sialylation patterns of individual Aβ glycopeptides in AD patients and controls.
31207953	6	39	gly	has	1145:1147	arg1	Psolusoside I AND an unprecedented branched tetrasaccharide disulfated carbohydrate moiety			I (7)	an unprecedented branched tetrasaccharide disulfated carbohydrate moiety					I (7)	Psolusoside I (7) has an unprecedented branched tetrasaccharide disulfated carbohydrate moiety with the xylose unit in the second position of the chain.
29215790	4	93	gly	fucosylated	573:583	arg1	the fucosylated structures				the fucosylated structures						Here, we aimed to define the contribution of the fucosylated structures, including sLeX/A , to cell adhesion, cell signaling, and cell proliferation in invasive ductal carcinomas (IDC), the most frequent type of breast cancer.
35021376	4	21	gly	glycoproteins	501:513	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			In this study, a boronic acid (BA)-tosyl-directed strategy to selectively immobilize glycoproteins on glass slides was successfully developed even in the presence of high-abundant nonglycosylated proteins.
35021376	4	34	gly	nonglycosylated	596:610	arg1	high-abundant nonglycosylated proteins	high-abundant nonglycosylated proteins				Fterm		proteins			In this study, a boronic acid (BA)-tosyl-directed strategy to selectively immobilize glycoproteins on glass slides was successfully developed even in the presence of high-abundant nonglycosylated proteins.
30980948	4	18	part_of	dsRNA	949:953	arg1	dsRNA fragments	dsRNA		dsRNA fragments		Cterm	Site	dsRNA		fragments	We found significant variability between different batches of poly(I:C) potassium salt obtained from the same vendor (Sigma-Aldrich) in terms of the relative amount of dsRNA fragments in the high molecular weight range (1000-6000 nucleotides long) and with regards to their effects on maternal thermoregulation and immune responses in maternal plasma, placenta and fetal brain.
29055059	4	77	gly	glycopeptides	750:762	arg2	glycopeptides			glycopeptides						glycopeptides	METHODS bbCID was applied to identify glycopeptides and phosphopeptides generated from standard proteins using a high-resolution Bruker maXis 3G mass spectrometer.
30337494	3	61	part_of	chitin	528:533	arg1	the smallest immunologically active motif	chitin		the smallest immunologically active motif		Fterm	Site	chitin		motif	By using defined chitin (N-acetyl-glucosamine) oligomers, we here identify six-subunit-long chitin chains as the smallest immunologically active motif and the innate immune receptor Toll-like receptor (TLR2) as a primary fungal chitin sensor on human and murine immune cells.