doc_id	sent_index	relation_id	relation	trigger	trigger_offset	arg_num	arg_base_np	arg_protein	arg_domain	arg_site	arg_sugar	PSource	SiteSource	NProtein	NID	SiteName	sent_text
30834312	1	17	part_of	region	254:259	arg1	gp120	gp120		region		PUBTATOR	Site	gp120	3700	region	Up to ∼20% of HIV-infected individuals eventually develop broadly neutralizing antibodies (bnAbs), and many of these antibodies (∼40%) target a region of dense high-mannose glycosylation on gp120 of the HIV envelope protein, known as the "high-mannose patch" (HMP).
30976088	5	64	part_of	Env	943:945	arg1	Env V3 residues 321/322 and 326/327	Env		Env V3 residues 321/322 and 326/327		PUBTATOR	Site	Env	100616444	residues	Moreover, we observed that TNC-mediated neutralization is also dependent on Env V3 residues 321/322 and 326/327, which surround the IGDIR motif of the V3 loop, as well the N332 glycan, which is critical to the broadly neutralizing activity of glycan-dependent V3-specific antibodies such as PGT128.
30791055	2	9	part_of	has	405:407	arg1	HBI AND different chemical composition	HBI		different chemical composition		OGER	Site	HBI	Q02790	position	Although HBI has different chemical composition and about half of the anticoagulant potency of HPI (∼100 and ∼180 international unit [IU]/mg, respectively), they have been employed as interchangeable UFHs in some countries since the 1990s.
29624378	10	62	gly	glycoprotein	1656:1667	arg1	a glycoprotein mass spectrum	a glycoprotein mass spectrum				Fterm		glycoprotein			Hence, MoFi exposes different layers of complexity that are present in the annotation of a glycoprotein mass spectrum.
30696937	7	33	part_of	BT-specific	1280:1290	arg1	selected tripeptides	LeuGlyGly, BT		selected tripeptides		PUBTATOR	Site	LeuGlyGly, BT	463	tripeptides	Eukaryotic expression constructs were prepared of AT, FS, iGb3S, and GT, possessing selected tripeptides of AT-specific AlaGlyGly or LeuGlyGly, BT-specific MetGlyAla, FS-specific GlyGlyAla, or iGb3S and GT-specific HisAlaAla, at the codons corresponding to 266-268 of human AT/BT.
30696937	7	38	part_of	LeuGlyGly	1269:1277	arg1	selected tripeptides	LeuGlyGly, BT		selected tripeptides		PUBTATOR	Site	LeuGlyGly, BT	463	tripeptides	Eukaryotic expression constructs were prepared of AT, FS, iGb3S, and GT, possessing selected tripeptides of AT-specific AlaGlyGly or LeuGlyGly, BT-specific MetGlyAla, FS-specific GlyGlyAla, or iGb3S and GT-specific HisAlaAla, at the codons corresponding to 266-268 of human AT/BT.
31774341	4	29	part_of	protein/glycoprotein	1251:1270	arg1	total protein/glycoprotein composition.Results	protein/glycoprotein		total protein/glycoprotein composition.Results		Fterm	Site	protein/glycoprotein		position	Prostasomes recovered in LAC-separated fractions were characterized according to the distribution of selected markers: gamma-glutamyl transferase (GGT), alkaline phosphatase (ALP), tetraspanin CD63, and total protein/glycoprotein composition.Results: Two CD63-immunoreactive populations exhibiting prostasome signature bands but differing in GGT activity and surface glycans were separated on the WGA column.
30110602	10	52	part_of	collagen/ORC-Ca	1737:1751	arg1	the collagen/ORC-Ca composite	ORC		the collagen/ORC-Ca composite		OGER	Site	ORC		composite	Therefore, it could be concluded that the collagen/ORC-Ca composite is a promising candidate as a scaffold for carrying SC to form nerve tissue engineering composites in order to assist the peripheral nervous in the repair and regeneration.
31295479	1	22	gly	found	154:158	arg2	cell-wall composition AND a sulfated hetero-polysaccharide			cell-wall composition	a sulfated hetero-polysaccharide					position	Fucoidan is a sulfated hetero-polysaccharide, found in cell-wall composition of brown algae.
31751727	10	55	part_of	CA/HAp	1270:1275	arg1	the CA/HAp composite	HAp		the CA/HAp composite		OGER	Site	HAp	O95197	composite	The adsorption mechanism on the CA/HAp composite can be established via ion exchange and surface complexation.
30391591	3	11	part_of	BSP-1	345:349	arg1	composition	BSP-1		composition		OGER	Site	BSP-1	P70340	position	The composition and proportion of BSP-1 and BSP-2 were mannose and glucose in molar ratios of 4.0:1.0 and 3.0:1.0 respectively.
30933903	3	12	part_of	rGO-Fc-CD	523:531	arg1	the rGO-Fc-CD composite	-CD		the rGO-Fc-CD composite		PUBTATOR	Site	-CD	65057	composite	An efficient chiral electrochemical sensing interface was constructed by using the rGO-Fc-CD composite as the electrode modification for the recognition of phenylalanine (Phe) enantiomers.
31304048	2	31	gly	glycoproteins	305:317	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			Core 2 O-GalNAc glycans are branched structures that are broadly distributed in glycoproteins and mucins of all types of cells.
32123597	2	12	gly	present	459:465	arg2	the constant region AND N-glycans			the constant region	N-glycans					region	In monoclonal antibodies, many functions are regulated by N-glycans present in the constant region of the heavy chains and their mechanisms of action are not completely known.
31005573	3	50	gly	leucine-rich	475:486	arg1	Small leucine-rich proteoglycans			leucine	Small leucine-rich proteoglycans					leucine	Small leucine-rich proteoglycans are major proteoglycans of the extracellular matrix and regulate collagen fibrillogenesis, cell signalling pathways and extracellular matrix assembly.
31005573	3	50	gly	leucine-rich	475:486	arg1	major proteoglycans			leucine	major proteoglycans					leucine	Small leucine-rich proteoglycans are major proteoglycans of the extracellular matrix and regulate collagen fibrillogenesis, cell signalling pathways and extracellular matrix assembly.
32089591	3	14	gly	fucosylated	619:629	arg1	simpler and less fucosylated structures				simpler and less fucosylated structures						Bovine milk oligosaccharides (BMO) are a potential source of HMO-mimics as BMO resemble HMO; however, they have simpler and less fucosylated structures.
30498196	7	35	part_of	Mac-1	1059:1063	arg1	the αI-domain	Mac-1		the αI-domain		PUBTATOR	Site	Mac-1	3684	αI-domain	In summary, cis interaction between sialylated FcγRIIA and the αI-domain of Mac-1 alters the threshold for IgG-mediated neutrophil recruitment.
30527747	4	28	part_of	LAMs	657:660	arg1	mannosyl residues	LAMs		mannosyl residues		OGER	Site	LAMs	P55268	residues	The results reveal that the major structural difference of these LAMs is the amount of mannosyl residues, especially at the terminal end of LAM, which play a key role in determining the divergent response of DCs after mycobacterial infection.
30261126	7	53	gly	used	1384:1387	arg2	the composites			the composites						composites	Therefore, the composites have the great potential of application in medicine, and depending on the applied porous material, might be used either in hernioplasty (if porous hernia mesh is used), cranioplasty (if perforated metal or polymeric cranial implant is applied), or as a protective barrier in any application that requires biocompatibility or antiadhesive properties improvement.
31005573	4	2	gly	leucine-rich	856:867	arg1	small leucine-rich proteoglycans			leucine	small leucine-rich proteoglycans					leucine	Here we used immunohistochemistry to investigate the distribution of class I (biglycan, decorin, asporin, ECM2 and ECMX) and class II (fibromodulin, lumican, prolargin, keratocan and osteoadherin) small leucine-rich proteoglycans in human cutaneous Pacinian corpuscles.
32089591	2	45	gly	sialylated	292:301	arg1	sialylated human milk oligosaccharides				sialylated human milk oligosaccharides						Fucosylated and sialylated human milk oligosaccharides (HMO) are important for both direct antimicrobial action - likely via a decoy effect - and indirect antimicrobial action through commensal growth enhancement.
30900851	3	12	gly	used	376:379	arg2	The composites			The composites						composites	The composites were used for phosphopeptide enrichment prior to analysis by matrix assisted laser desorption ionization time of flight mass spectrometry (MALDI-TOF MS).
29414706	2	8	part_of	peptides	328:335	arg1	presenilin	presenilin		peptides		Fterm	Site	presenilin		peptides	IAPs include signal peptide peptidase, which processes remnant signal peptides from nascent polypeptides in the endoplasmic reticulum, and presenilin, the catalytic component of the γ-secretase complex that processes Notch and amyloid precursor protein.
30679893	3	26	gly	glycoproteins	528:540	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			It is also notable that glycoproteins, one of existing forms of glycans (i.e., glycoconjugates) are generally synthesized in lumen sites of endoplasmic reticulum and the following Golgi apparatus, distinct from cytoplasmic proteins, which are not subjected to glycosylation, a major event of posttranslational modifications.
32146468	5	24	gly	contain	440:446	arg1	Strain H11 AND 711 carbohydrate-related genes	Strain H11			711 carbohydrate-related genes	Fterm		Strain			Strain H11 was found to contain 711 carbohydrate-related genes, and 259 genes belong to glycoside hydrolases that have the potential to hydrolyze EP.
29960906	3	43	part_of	GR-β-CD	600:606	arg1	A stable GR-β-CD composite	GR-β-CD		A stable GR-β-CD composite		PUBTATOR	Site	GR-β-CD	65057	composite	A stable GR-β-CD composite was prepared by sonication of GR in β-CD aqueous solution.
29441088	4	12	gly	glycoproteins	951:963	arg1	Man9-rich HMG glycoproteins				Man9-rich HMG glycoproteins						Here, we investigated the effect of kifunensine, an α-mannosidase I inhibitor, supplemented in a hydroponic culture of N. benthamiana for the production of Man9-rich HMG glycoproteins, using N-glycosylated cholera toxin B subunit (gCTB) and human immunodeficiency virus gp120 that are tagged with a H/KDEL endoplasmic reticulum retention signal as model vaccine antigens.
31276724	2	23	part_of	composition	311:321	arg1	PSP	PSP		composition		OGER	Site	PSP	O60542	position	However, the composition and structure of bioactive components in PSP remain elusive.
31619635	5	19	part_of	compositions	891:902	arg1	HAS	HAS		compositions		OGER	Site	HAS	Q92839	positions	The cecal microbial compositions in HAS, S-Wh and CON/S-Rf exhibited 3 distinct clusters suggesting a significant effect of the cecal microbial composition on cecal parameters, SCFA contents and physiological parameters.
30120580	3	32	part_of	PLA-CHS	423:429	arg1	the PLA-CHS composite	CHS		the PLA-CHS composite		OGER	Site	CHS	Q99698	composite	This work reports the physical and chemical characterization of the PLA-CHS composite, prepared by the electrospinning technique using a mixed solvent system.
29920370	5	9	part_of	PLA/RAMCC	623:631	arg1	PLA/RAMCC biocomposite	MCC		PLA/RAMCC biocomposite		OGER	Site	MCC		biocomposite	PLA/RAMCC biocomposite (with 2 wt% loading) exhibited lower water sorption compared to PLA film and PLA/MCC.
29410268	11	20	part_of	TPS/CNF	1635:1641	arg1	the TPS/CNF composites	TPS/CNF		the TPS/CNF composites		PUBTATOR	Site	TPS/CNF	4868	composites	The WA of the TPS/CNF composites moderately decreased with the addition of CNFs.
30591361	3	7	part_of	β-CD/CNF	771:778	arg1	the β-CD/CNF composite	-CD		the β-CD/CNF composite		PUBTATOR	Site	-CD	65057	composite	The uniform enfolding of hydrophilic β-CD over CNF enhance the aqueous dispersion and offer abundant active surface to the β-CD/CNF composite.
29853074	2	26	part_of	CaP/CS	372:377	arg1	The calcium phosphate/chitosan (CaP/CS) composite	CaP		The calcium phosphate/chitosan (CaP/CS) composite		OGER	Site	CaP		composite	The calcium phosphate/chitosan (CaP/CS) composite prepared in m-SBF showed a homogeneous distribution of spherical nano-clusters.
30778562	14	0	part_of	PAL	1975:1977	arg1	the PAL composites	PAL		the PAL composites		OGER	Site	PAL	Q9P2V4	composites	Additionally, the PAL composites improved the antioxidant status of broilers and the beneficial effects of COS/ZnO/PAL on the antioxidant status are more pronounced.
30778562	14	2	part_of	COS/ZnO/PAL	2064:2074	arg1	the PAL composites	PAL		the PAL composites		OGER	Site	PAL	Q9P2V4	composites	Additionally, the PAL composites improved the antioxidant status of broilers and the beneficial effects of COS/ZnO/PAL on the antioxidant status are more pronounced.
31394182	5	56	gly	composition	735:745	arg1	its complexed form			position	its complexed form					position	The composition in its complexed form showed greater deterrence capacity than the physical blend except in solvents with ionic moieties, where the deterrence remained almost the same.
31401281	4	30	part_of	chitosan-SnS2	495:507	arg1	chitosan-cobalt and chitosan-SnS2 nanocomposites	SnS2		chitosan-cobalt and chitosan-SnS2 nanocomposites		OGER	Site	SnS2	Q9UI33	nanocomposites	In present work, cobalt and tin sulfide nanoparticles are used to synthesize chitosan-cobalt and chitosan-SnS2 nanocomposites, and used for corrosion protection of mild steel (MS) in 1 M HCl at room temperature.
31755197	5	28	gly	ascomycete	881:890	arg1	the homologous endoglucanase	endoglucanase			ascomycete	Fterm		endoglucanase			The enzyme was compared with the homologous endoglucanase from the mesophilic model ascomycete Trichoderma reesei (TrCel7B), which unlike ReCel7B possesses an additional carbohydrate-binding module (CBM).
31604180	13	102	part_of	plasmin	2201:2207	arg1	the lysine-binding sites	plasmin		the lysine-binding sites		PUBTATOR	Site	plasmin	5340	sites	The 20-35% prolongation of lysis-times caused by all polyphosphates was a kringle-dependent phenomenon, and was dampened in the presence of 6-aminohexanoate blocking the lysine-binding sites of plasmin.
31369786	0	58	part_of	/β-chitin	145:153	arg1	poly(acrylic acid)/β-chitin composites	chitin		poly(acrylic acid)/β-chitin composites		Fterm	Site	chitin		composites	Effect of exfoliating agent on rheological behavior of β-chitin fibrils in aqueous suspensions and on mechanical properties of poly(acrylic acid)/β-chitin composites.
30819031	8	65	part_of	PVA/MCC	1617:1623	arg1	the PVA/MCC composite	PVA		the PVA/MCC composite		OGER	Site	PVA	P32926	composite	CONCLUSION: The present work shows how the properties of the PVA/MCC composite can become modular with the aim of extending its range of application as a new sustainable solution in the field of consumer products.
31323374	8	40	part_of	GP/curcumin	1376:1386	arg1	the tested GP/curcumin composites	curcumin		the tested GP/curcumin composites		Fterm	Site	curcumin		composites	The activity of NF-κB/AP-1 was substantially decreased by the tested GP/curcumin composites, which also caused the attenuation of cytokines secretion.
31121211	7	18	part_of	CS	946:947	arg1	CS NPs + HAMC composites	CS NPs		CS NPs + HAMC composites		OGER	Site	CS NPs	P0C0P7	composites	Furthermore, a blood-induced ICH rat model was established to evaluate the therapeutic effect of CS NPs + HAMC composites.
31121211	7	53	part_of	NPs + HAMC	949:958	arg1	CS NPs + HAMC composites	CS NPs		CS NPs + HAMC composites		OGER	Site	CS NPs	P0C0P7	composites	Furthermore, a blood-induced ICH rat model was established to evaluate the therapeutic effect of CS NPs + HAMC composites.
30591361	4	68	part_of	β-CD/CNF	837:844	arg1	the β-CD/CNF composite	-CD		the β-CD/CNF composite		PUBTATOR	Site	-CD	65057	composite	Further, the electrocatalytic efficacy of the β-CD/CNF composite is utilized to fabricate an electrochemical sensor for the high sensitive quantitative detection of NFT.
29520710	6	61	part_of	Robo1	1024:1028	arg1	the Ig1 and Ig2 domains	Robo1		the Ig1 and Ig2 domains		PUBTATOR	Site	Robo1	6091	domains	The results also suggest that the highly flexible interdomain hinge region connecting the Ig1 and Ig2 domains of Robo1 plays an important functional role in promoting the Robo1-Slit interaction.
32010168	6	46	gly	N-glycopeptides	932:946	arg2	intact N-glycopeptides			N-glycopeptides	N-glycan compositions					N-glycopeptides	By characterizing N-glycan compositions of intact N-glycopeptides from these mutant strains by mass spectrometry, a candidate gene encoding for a second putative core xylosyltransferase (XylT1B) was identified.
31200223	3	5	gly	used	567:570	arg2	the ZnO NPs/GG nanocomposite			the ZnO NPs/GG nanocomposite						nanocomposite	Among all tested composites, the ZnO NPs/GG nanocomposite showed the highest photocatalytic activity and hence used in extended adsorption and degradation studies against the anionic dye reactive red (RR195) and the cationic dye Rhodamine B (RhB).
30690433	6	6	part_of	CNC-HA/GM-CSF-Chi-NPs	863:883	arg1	CNC-HA/GM-CSF-Chi-NPs composite	GM-CSF		CNC-HA/GM-CSF-Chi-NPs composite		PUBTATOR	Site	GM-CSF	1437	composite	CNC-HA/GM-CSF-Chi-NPs composite showed some physicochemical characteristics such as appropriate mechanical properties, high swelling capacity (swelling ratio: 2622.1% ± 35.2%) and controlled release of GM-CSF up to 48 h which make it an excellent candidate for wound dressing.
30834312	3	49	gly	glycopeptides	608:620	arg2	glycopeptides			glycopeptides						glycopeptides	Herein, we report on the immunogenicity of glycopeptides, designed by in vitro selection, that bind tightly to anti-HMP antibody 2G12.
29620251	7	63	gly	glycosylated	1193:1204	arg1	glycosylated proteins	glycosylated proteins				Fterm		proteins			Wheat germ agglutinin-gold labeling revealed clusters of gold particles ~50-200 nm in diameter on COS7 cells, which might represent assemblies of glycosylated proteins, suggesting the formation of membrane raft structures that include membrane proteins.
29441088	2	83	gly	glycoprotein	463:474	arg1	glycoprotein antigens	glycoprotein antigens				Fterm		glycoprotein			High-mannose-type glycans (HMGs) of glycoprotein antigens have been implicated in the effectiveness of some subunit vaccines.
30039738	0	6	part_of	Impact	0:5	arg1	extracellular matrix composition	Impact		extracellular matrix composition		OGER	Site	Impact	O55091	position	Impact of different intratracheal flows during lung decellularization on extracellular matrix composition and mechanics.
30165147	5	32	part_of	PCC	759:761	arg1	nanocomposites	PCC		nanocomposites		OGER	Site	PCC		nanocomposites	The addition of CNF-ramie and PCC in nanocomposites has increased moisture absorption, crystallinity, and thermal stability properties.
29722535	3	54	part_of	FeS	371:373	arg1	FeS nanoparticle-impregnated alginate composite	FeS		FeS nanoparticle-impregnated alginate composite		OGER	Site	FeS	P07332	composite	In this study, in situ immobilization technology was applied to prepare FeS nanoparticle-impregnated alginate composite (FeS-SA) for Se(IV) remediation.
30936014	2	38	part_of	C/HNTs	356:361	arg1	chitin/halloysite nanotubes (C/HNTs) composites	HNTs		chitin/halloysite nanotubes (C/HNTs) composites		OGER	Site	HNTs	P30990	composites	In this study, we developed an oil-water separation system with chitin/halloysite nanotubes (C/HNTs) composites.
29298890	12	94	part_of	variant	2039:2045	arg1	an 88-amino-acid extended leader sequence	variant		an 88-amino-acid extended leader sequence		Fterm	Site	variant		sequence	gPr80 is a variant of the structural Pr65 Gag protein with an 88-amino-acid extended leader sequence that directs the protein for translation and glycosylation in the endoplasmic reticulum.
31255621	3	26	part_of	PLA/CNC	436:442	arg1	The PLA/CNC composites	CNC		The PLA/CNC composites		OGER	Site	CNC	P32418	composites	The PLA/CNC composites prepared were studied by rheological, thermal as well as mechanical measurements.
31401281	7	27	part_of	chitosan-SnS2	1096:1108	arg1	chitosan-SnS2 nanocomposite	SnS2		chitosan-SnS2 nanocomposite		OGER	Site	SnS2	Q9UI33	nanocomposite	The results have declared that chitosan-cobalt nanocomposite is more effective in corrosion inhibition of mild steel than chitosan-SnS2 nanocomposite.
31258789	6	21	part_of	IgG	950:952	arg1	The IgG N-glycome composition	IgG		The IgG N-glycome composition		Cterm	Site	IgG		position	The IgG N-glycome composition was analyzed by ultra-performance liquid chromatography.
31417166	7	45	gly	glycoproteins	1320:1332	arg1	two strong glycoproteins	two strong glycoproteins				Fterm		glycoproteins			Analysis of glycosylation activity exposed two strong glycoproteins as 300-kDa and 240-kDa.
30428408	4	2	part_of	antithrombin	597:608	arg1	heparin's antithrombin III binding site	antithrombin III		heparin's antithrombin III binding site		PUBTATOR	Site	antithrombin III	540261	site	These techniques include structural analysis by nuclear magnetic resonance spectrometry, disaccharide compositional analysis, bottom-up analysis of tetrasaccharides corresponding to heparin's antithrombin III binding site.
30976088	4	15	part_of	TNC	740:742	arg1	the TNC fibrinogen-like globe	TNC		the TNC fibrinogen-like globe		PUBTATOR	Site	TNC	3371	globe	We observed that TNC binding and neutralization of HIV-1 is dependent on the TNC fibrinogen-like globe (fbg) and fibronectin-type III (fn) domains, oligomerization, and its newly-mapped glycan structure.
30976088	4	53	part_of	fibronectin-type	776:791	arg1	fibronectin-type III (fn) domains	fibronectin		fibronectin-type III (fn) domains		OGER	Site	fibronectin	P02751	domains	We observed that TNC binding and neutralization of HIV-1 is dependent on the TNC fibrinogen-like globe (fbg) and fibronectin-type III (fn) domains, oligomerization, and its newly-mapped glycan structure.
30486344	7	3	gly	sterigmatocystin	1117:1132	arg1	polysaccharide	sterigmatocystin			polysaccharide	Fterm		sterigmatocystin			The effects of temperature and humidity were evaluated using total saponin, polysaccharide and the sterigmatocystin levels as quality indexes.
30861377	0	27	gly	unit	93:96	arg1	Aeromonas hydrophila strain K691	strain			unit	Fterm		strain			Chemical synthesis of the 4-amino-4,6-dideoxy-d-glucose containing pentasaccharide repeating unit of the O-specific polysaccharide from Aeromonas hydrophila strain K691 in the form of its 2-aminoethyl glycoside.
30861377	0	36	gly	strain	157:162	arg1	pentasaccharide repeating unit	strain			pentasaccharide repeating unit	Fterm		strain			Chemical synthesis of the 4-amino-4,6-dideoxy-d-glucose containing pentasaccharide repeating unit of the O-specific polysaccharide from Aeromonas hydrophila strain K691 in the form of its 2-aminoethyl glycoside.
30861377	0	36	gly	strain	157:162	arg1	the O-specific polysaccharide	strain			the O-specific polysaccharide	Fterm		strain			Chemical synthesis of the 4-amino-4,6-dideoxy-d-glucose containing pentasaccharide repeating unit of the O-specific polysaccharide from Aeromonas hydrophila strain K691 in the form of its 2-aminoethyl glycoside.
30882809	1	51	part_of	Phosvitin	155:163	arg1	Phosvitin phosphopeptides	Phosvitin		Phosvitin phosphopeptides		PUBTATOR	Site	Phosvitin	1460	phosphopeptides	Phosvitin phosphopeptides (PPP) effectively enhanced calcium bioavailability via inhibiting calcium-phosphate deposition.
29624378	5	50	gly	derived	886:892	arg2	glycopeptide AND a glycan library			glycopeptide	a glycan library					glycopeptide	Importantly, the program only includes those combinations which are supported by a glycan library as derived from glycopeptide or released glycan analysis.
29624378	5	54	gly	glycopeptide	899:910	arg2	glycopeptide			glycopeptide						glycopeptide	Importantly, the program only includes those combinations which are supported by a glycan library as derived from glycopeptide or released glycan analysis.
30534192	3	31	gly	glycoproteins	549:561	arg1	the glycoproteins	the glycoproteins				Fterm		glycoproteins			The N-linked glycans bore by the glycoproteins are then processed into oligomannosides prior to the exit of the glycoproteins from the endoplasmic reticulum and its entrance into the Golgi apparatus.
30534192	3	72	gly	glycoproteins	470:482	arg1	the glycoproteins	the glycoproteins				Fterm		glycoproteins			The N-linked glycans bore by the glycoproteins are then processed into oligomannosides prior to the exit of the glycoproteins from the endoplasmic reticulum and its entrance into the Golgi apparatus.
31199973	2	71	part_of	19.55 min	700:708	arg1	the ATPS composition	19.55 min		the ATPS composition		Fterm	Site	19.55 min		position	Key factors in MAATPE process were optimized by response surface methodology, and the optimum conditions were concluded as follows: the ATPS composition of ethanol concentration 26.0% (w/w) and (NH4)2SO4 concentration 19.58% (w/w), extraction temperature 78.7 °C, extraction time 19.55 min and solid-to-solvent ratio 1:50.
31774341	4	31	gly	markers	1152:1158	arg1	total protein/glycoprotein composition.Results			total protein/glycoprotein composition.Results						position	Prostasomes recovered in LAC-separated fractions were characterized according to the distribution of selected markers: gamma-glutamyl transferase (GGT), alkaline phosphatase (ALP), tetraspanin CD63, and total protein/glycoprotein composition.Results: Two CD63-immunoreactive populations exhibiting prostasome signature bands but differing in GGT activity and surface glycans were separated on the WGA column.
31774341	4	46	gly	protein/glycoprotein	1251:1270	arg1	total protein/glycoprotein composition.Results	total protein/glycoprotein composition.Results				Fterm		protein/glycoprotein			Prostasomes recovered in LAC-separated fractions were characterized according to the distribution of selected markers: gamma-glutamyl transferase (GGT), alkaline phosphatase (ALP), tetraspanin CD63, and total protein/glycoprotein composition.Results: Two CD63-immunoreactive populations exhibiting prostasome signature bands but differing in GGT activity and surface glycans were separated on the WGA column.
30566343	5	75	part_of	Bpa	1062:1064	arg1	the Bpa residue	Bpa		the Bpa residue		OGER	Site	Bpa	Q03001	residue	The method employs a benzoylphenylalanine (Bpa) mutant of a previously described 13-residue peptide derived from phage display to bind tightly to the Fc domain; upon UV irradiation, the Bpa residue forms a diradical that reacts with the bound antibody.
31669273	2	14	part_of	APS	291:293	arg1	composition	APS		composition		OGER	Site	APS	O14492	position	In this study, the structure and composition of APS was determined, following the evaluation of in vitro and in vivo anti-tumor activity of APS targeted macrophages and host immune system based on immunoregulated strategy.
30914366	2	38	part_of	PVA	274:276	arg1	Literature reported composition	PVA		Literature reported composition		OGER	Site	PVA	P32926	position	Literature reported composition of PVA, starch and glycerol were adopted and the optimality of crosslinking temperature (40 to 60 °C) and citric acid concentration (0.5 to 3 g) have been investigated during solution casting based composite film fabrication.
29298890	11	89	gly	glycosylated	1922:1933	arg1	the MLV-encoded glycosylated Gag (gPr80) protein	the MLV-encoded glycosylated Gag (gPr80) protein				Fterm		protein			Here we analyze the details of how the MLV-encoded glycosylated Gag (gPr80) protein protects the virus from being restricted by host innate immune defenses.
29853102	5	3	part_of	GNS-CaP-CS/AZ91D	1131:1146	arg1	GNS-CaP-CS/AZ91D composites	GNS		GNS-CaP-CS/AZ91D composites		OGER	Site	GNS	P15586	composites	GNS released from GNS-CaP-CS/AZ91D composites might serve a critical role to induce osteogenic differentiation through ERK/MAPK pathway in the long-term immersion process, while, PI3K/Akt signaling only significantly in the early stage.
29853074	6	40	part_of	CaP/CS	1026:1031	arg1	nanostructured CaP/CS composites	CaP		nanostructured CaP/CS composites		OGER	Site	CaP		composites	This in vitro study showed improved cell adhesion and differentiation on nanostructured CaP/CS composites.
31200223	3	36	part_of	NPs/GG	493:498	arg1	the ZnO NPs/GG nanocomposite	ZnO NPs		the ZnO NPs/GG nanocomposite		OGER	Site	ZnO NPs	P0C0P6	nanocomposite	Among all tested composites, the ZnO NPs/GG nanocomposite showed the highest photocatalytic activity and hence used in extended adsorption and degradation studies against the anionic dye reactive red (RR195) and the cationic dye Rhodamine B (RhB).
31200223	3	60	part_of	ZnO	489:491	arg1	the ZnO NPs/GG nanocomposite	ZnO NPs		the ZnO NPs/GG nanocomposite		OGER	Site	ZnO NPs	P0C0P6	nanocomposite	Among all tested composites, the ZnO NPs/GG nanocomposite showed the highest photocatalytic activity and hence used in extended adsorption and degradation studies against the anionic dye reactive red (RR195) and the cationic dye Rhodamine B (RhB).
31276724	1	67	gly	used	213:216	arg2	Polysaccharopeptide			Polysaccharopeptide						Polysaccharopeptide	Polysaccharopeptide (PSP) from the medicinal mushroom Coriolus versicolor has been widely used in Asia as an adjunctive immunotherapy for treating cancers and liver diseases.
30372996	2	24	part_of	HMOs	435:438	arg1	The HMOs composition	HMOs		The HMOs composition		OGER	Site	HMOs	P00540	position	The HMOs composition and concentrations vary significantly among different women mainly because of the direct influence of the Secretor and Lewis phenotypes on HMOs biosynthesis.
29486259	1	83	part_of	Cellulose-HAp-CME	268:284	arg1	chemically-modified carbon electrode (Cellulose-HAp-CME) composite	HAp		chemically-modified carbon electrode (Cellulose-HAp-CME) composite		OGER	Site	HAp	O95197	composite	A novel synthesis and characterization of cellulose, hydroxyapatite and chemically-modified carbon electrode (Cellulose-HAp-CME) composite was reported for the analysis of trace Pb(II) ions detection and its validation in blood serum.
31004639	2	49	gly	strain	198:203	arg1	high exopolysaccharide (EPS) production ability	strain			high exopolysaccharide (EPS) production ability	Fterm		strain			A strain of Lactobacillus reuteri Mh-001 with high exopolysaccharide (EPS) production ability was isolated, identified, and were used to investigate the anti-inflammatory effects of the EPSs.
31121211	8	16	part_of	NPs + HAMC	1008:1017	arg1	the CS NPs + HAMC (+) composite	CS NPs		the CS NPs + HAMC (+) composite		OGER	Site	CS NPs	P0C0P7	composite	Intranasal administration of the CS NPs + HAMC (+) composite showed a stronger neuroprotective effect in terms of brain edema reduction and neural apoptosis inhibition compared to the CS NPs + HAMC composite.
31121211	8	44	part_of	NPs + HAMC	1159:1168	arg1	the CS NPs + HAMC composite	CS NPs		the CS NPs + HAMC composite		OGER	Site	CS NPs	P0C0P7	composite	Intranasal administration of the CS NPs + HAMC (+) composite showed a stronger neuroprotective effect in terms of brain edema reduction and neural apoptosis inhibition compared to the CS NPs + HAMC composite.
31121211	8	45	part_of	CS	1156:1157	arg1	the CS NPs + HAMC composite	CS NPs		the CS NPs + HAMC composite		OGER	Site	CS NPs	P0C0P7	composite	Intranasal administration of the CS NPs + HAMC (+) composite showed a stronger neuroprotective effect in terms of brain edema reduction and neural apoptosis inhibition compared to the CS NPs + HAMC composite.
29624378	1	33	gly	glycoproteins	212:224	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			Hybrid mass spectrometry (MS) is an emerging technique for characterizing glycoproteins, which typically display pronounced microheterogeneity.
31581521	5	54	gly	α-2,6-sialylated	1134:1149	arg1	α-2,3- and α-2,6-sialylated Fc glycosylation variants	α-2,3- and α-2,6-sialylated Fc glycosylation variants				Fterm		variants			Furthermore, significant deuterium uptake differences and corresponding binding properties to Fc receptors (as monitored by SPR) between α-2,3- and α-2,6-sialylated Fc glycosylation variants were verified at sensitive levels.
30214024	3	60	gly	fucosylated	407:417	arg1	milk containing α1-2 fucosylated human milk oligosaccharides				milk containing α1-2 fucosylated human milk oligosaccharides						Secretor mothers produce milk containing α1-2 fucosylated human milk oligosaccharides, which are absent in the milk of non-secretor mothers.
31739069	0	59	part_of	α-glucosidase	37:49	arg1	alkaline-extracted from glycyrrhiza inflata residue	α-glucosidase		alkaline-extracted from glycyrrhiza inflata residue		Fterm	Site	α-glucosidase		residue	Chemical structure and inhibition on α-glucosidase of polysaccharide with alkaline-extracted from glycyrrhiza inflata residue.
31774341	5	57	gly	glycoproteins	1508:1520	arg1	total glycoproteins	total glycoproteins				Fterm		glycoproteins			Additional populations having distinct profiles of total glycoproteins and which can be tracked down by ALP activity were enriched on the Con A column.
29856921	11	73	part_of	lactose-PEG	2123:2133	arg1	the spherical spray-dried lactose-PEG 200 composites	PEG		the spherical spray-dried lactose-PEG 200 composites		OGER	Site	PEG	P09466	composites	This provided an insight into the relatively inferior performance of the adhesive blends containing the spherical spray-dried lactose-PEG 200 composites.
30690433	9	15	part_of	CNC-HA/GM-CSF-Chi-NPs	1759:1779	arg1	CNC-HA/GM-CSF-Chi-NPs composite	GM-CSF		CNC-HA/GM-CSF-Chi-NPs composite		PUBTATOR	Site	GM-CSF	1437	composite	Our results suggest that CNC-HA/GM-CSF-Chi-NPs composite can be potentially applied in clinical practice for wound treatment.
31604508	3	1	part_of	PRP	500:502	arg1	different compositions	PRP		different compositions		PUBTATOR	Site	PRP	722	positions	However, different compositions of PRP, absolute platelet counts, and many other physiological and demographic variables will influence the effectiveness.
32222228	3	10	part_of	ECM	888:890	arg1	the GAG composition	ECM		the GAG composition		OGER	Site	ECM	Q13201	position	However, despite their relevance to the field of TE, little information is available on the GAG composition of cell-derived ECM, mainly due to the lack of appropriate quantitative tools to determine different GAG and disaccharide subtypes in complex biological samples.
31789494	6	35	part_of	tenascin	1143:1150	arg1	deposition	tenascin		deposition		PUBTATOR	Site	tenascin	3371	position	The evaluation of the biological commitment with human adipose-derived stem cells toward the tendon-to-bone interface revealed an aligned cell growth and higher synthesis and deposition of tenascin in the anisotropic phase, while the activity of the secreted alkaline phosphatase and the expression of osteopontin were induced in the mineralized phase.
29960906	2	19	part_of	GR-β-CD	446:452	arg1	copper oxide nanoparticle (CuO NPs) decorated graphene/β-cyclodextrin (GR-β-CD) composites	GR-β-CD		copper oxide nanoparticle (CuO NPs) decorated graphene/β-cyclodextrin (GR-β-CD) composites		PUBTATOR	Site	GR-β-CD	65057	composites	In this regard, we have prepared copper oxide nanoparticle (CuO NPs) decorated graphene/β-cyclodextrin (GR-β-CD) composites using a simple electrochemical methodology, where the CuO NPs are electrodeposited on GR-β-CD composite modified electrodes.
29960906	2	20	part_of	NPs	406:408	arg1	copper oxide nanoparticle (CuO NPs) decorated graphene/β-cyclodextrin (GR-β-CD) composites	CuO NPs		copper oxide nanoparticle (CuO NPs) decorated graphene/β-cyclodextrin (GR-β-CD) composites		OGER	Site	CuO NPs	P0C0P6	composites	In this regard, we have prepared copper oxide nanoparticle (CuO NPs) decorated graphene/β-cyclodextrin (GR-β-CD) composites using a simple electrochemical methodology, where the CuO NPs are electrodeposited on GR-β-CD composite modified electrodes.
29960906	2	34	part_of	CuO	402:404	arg1	copper oxide nanoparticle (CuO NPs) decorated graphene/β-cyclodextrin (GR-β-CD) composites	CuO NPs		copper oxide nanoparticle (CuO NPs) decorated graphene/β-cyclodextrin (GR-β-CD) composites		OGER	Site	CuO NPs	P0C0P6	composites	In this regard, we have prepared copper oxide nanoparticle (CuO NPs) decorated graphene/β-cyclodextrin (GR-β-CD) composites using a simple electrochemical methodology, where the CuO NPs are electrodeposited on GR-β-CD composite modified electrodes.
31200223	5	16	part_of	NPs/GG	775:780	arg1	The ZnO NPs/GG nanocomposite	ZnO NPs		The ZnO NPs/GG nanocomposite		OGER	Site	ZnO NPs	P0C0P6	nanocomposite	The ZnO NPs/GG nanocomposite showed quite high removal efficiency for both dyes reaching about 96 degradation percent of the initial dye concentration as well as a high adsorption capacity reaching 70 mg g-1.
31200223	5	45	part_of	ZnO	771:773	arg1	The ZnO NPs/GG nanocomposite	ZnO NPs		The ZnO NPs/GG nanocomposite		OGER	Site	ZnO NPs	P0C0P6	nanocomposite	The ZnO NPs/GG nanocomposite showed quite high removal efficiency for both dyes reaching about 96 degradation percent of the initial dye concentration as well as a high adsorption capacity reaching 70 mg g-1.
30986530	1	105	part_of	SF	314:315	arg1	chitosan (CH)/silk fibroin (SF)/glycerophosphate (GP) composites	SF		chitosan (CH)/silk fibroin (SF)/glycerophosphate (GP) composites		PUBTATOR	Site	SF	24446	composites	Copper-containing bioactive glass nanoparticles (Cu-BG NPs) with designed compositions and sizes were synthesized and incorporated into chitosan (CH)/silk fibroin (SF)/glycerophosphate (GP) composites to prepare injectable hydrogels for cell-free bone repair.
30976784	1	9	gly	glycoprotein	268:279	arg1	glycoprotein quality control	glycoprotein quality control				Fterm		glycoprotein			The endoplasmic reticulum (ER) contains both α-glucosidases and α-mannosidases which process the N-linked oligosaccharides of newly synthesized glycoproteins and thereby facilitate polypeptide folding and glycoprotein quality control.
30976784	1	21	gly	glycoproteins	207:219	arg1	the N-linked oligosaccharides	glycoproteins			the N-linked oligosaccharides	Fterm		glycoproteins			The endoplasmic reticulum (ER) contains both α-glucosidases and α-mannosidases which process the N-linked oligosaccharides of newly synthesized glycoproteins and thereby facilitate polypeptide folding and glycoprotein quality control.
30452995	6	45	part_of	PVA/N-starch	1018:1029	arg1	pure PVA/N-starch composites	PVA		pure PVA/N-starch composites		OGER	Site	PVA	P32926	composites	Elongation at break % of PVA/starch-grafted-poly (EMA) (1:1) increased up to 38.9% of pure PVA/N-starch composites (1:1).
31210628	3	20	part_of	domain	605:610	arg1	the L. nagelii TMW 1.1827 dextransucrase	dextransucrase		domain		Fterm	Site	dextransucrase		domain	Differences between both proteins mainly arise from an additional C-terminal glucan-binding domain and the presence of a signal motif in the L. nagelii TMW 1.1827 dextransucrase.
29571131	7	80	part_of	heparin	1556:1562	arg1	organic and inorganic composition	heparin		organic and inorganic composition		Fterm	Site	heparin		position	NMR spectrometry represents a unique analytical method suitable for the simultaneous quantitative control of organic and inorganic composition of heparin.
29960906	4	25	part_of	NPs	701:703	arg1	As-prepared GR-β-CD/CuO NPs composites	NPs		As-prepared GR-β-CD/CuO NPs composites		OGER	Site	NPs	P0C0P6	composites	As-prepared GR-β-CD/CuO NPs composites were characterized by the high-resolution scanning electron microscopy, X-ray diffraction, and Raman spectroscopy.
29960906	4	51	part_of	GR-β-CD/CuO	689:699	arg1	As-prepared GR-β-CD/CuO NPs composites	-CD		As-prepared GR-β-CD/CuO NPs composites		PUBTATOR	Site	-CD	65057	composites	As-prepared GR-β-CD/CuO NPs composites were characterized by the high-resolution scanning electron microscopy, X-ray diffraction, and Raman spectroscopy.
31515898	5	51	part_of	insulin-like	1008:1019	arg1	other glycosylated four-disulfide insulin-like peptides	insulin		other glycosylated four-disulfide insulin-like peptides		OGER	Site	insulin	P01308	peptides	This is the first report for the chemical synthesis of insulin-like heterodimeric glycopeptide having three interchain disulfides, and the synthetic strategy shown here might be useful for the synthesis of other glycosylated four-disulfide insulin-like peptides.
31515898	5	57	part_of	insulin-like	823:834	arg1	insulin-like heterodimeric glycopeptide	insulin		insulin-like heterodimeric glycopeptide		OGER	Site	insulin	P01308	glycopeptide	This is the first report for the chemical synthesis of insulin-like heterodimeric glycopeptide having three interchain disulfides, and the synthetic strategy shown here might be useful for the synthesis of other glycosylated four-disulfide insulin-like peptides.
30730130	5	14	part_of	GLP	1008:1010	arg1	chemical composition	GLP		chemical composition		OGER	Site	GLP	Q9NYA3	position,	The morphology and structure, chemical composition, biocompatibility, antioxidant, and antibacterial effects of the fabricated YSPs, photothermal effects, and the release profile of the encapsulated GLP were studied in vitro.
31401281	8	47	part_of	chitosan-SnS2	1233:1245	arg1	chitosan‑cobalt (>95%) and chitosan-SnS2 (>80%) composites	SnS2		chitosan‑cobalt (>95%) and chitosan-SnS2 (>80%) composites		OGER	Site	SnS2	Q9UI33	composites	Alone chitosan provide only 77% inhibition to mild steel, while it increases for chitosan‑cobalt (>95%) and chitosan-SnS2 (>80%) composites.
30611503	4	13	gly	present	645:651	arg2	alcohol insoluble residue AND The cell wall polysaccharides			alcohol insoluble residue	The cell wall polysaccharides					residue	The cell wall polysaccharides present in alcohol insoluble residue (AIR) were further subdivided into different fractions, and the composition of monosaccharides in each fraction was analyzed by gas chromatography.
31041762	10	11	part_of	pectin	2221:2226	arg1	pectin composition	pectin		pectin composition		Fterm	Site	pectin		position	This chapter explains a simple protocol that can be used in any molecular biology laboratory to estimate total pectin content using a colorimetric assay and pectin composition using antibodies raised against specific pectin components.
31536333	5	55	part_of	PVA/RC-SP	918:926	arg1	the fabricated PVA/RC-SP composites	PVA		the fabricated PVA/RC-SP composites		OGER	Site	PVA	P32926	composites	Moreover, the fabricated PVA/RC-SP composites exhibit good water-induced shape memory effect, and shape recovery rate of 10% RC-SP reinforced composite reaches 95.3% after immersing for 35 min.
31718349	2	59	gly	used	419:422	arg2	Appropriate composition			Appropriate composition						position	Appropriate composition of purified guar gum, Schiff base ligand and silver nitrate were used for the synthesis.
30277587	3	40	part_of	proteins	985:992	arg1	the composition	proteins		the composition		Fterm	Site	proteins		position	Severity of colitis, the composition of the fecal microbiota, expression of Th1/Th17 cells, myeloperoxidase (MPO) concentrations, and inflammatory cytokines and chemokines (tumor necrosis factor-α [TNF-α], IL-6, macrophage inflammatory protein [MIP]-2, monocyte chemoattractant protein-1 [MCP-1], and MIP-1α), as well as arginase 1 (Arg1) and signal transducers and activators of transcription 6 (STAT6) proteins, were measured at the end of the experiment.
30277587	3	40	part_of	proteins	985:992	arg1	Arg1	proteins		Arg1		Fterm	AminoAcid	proteins		Arg1	Severity of colitis, the composition of the fecal microbiota, expression of Th1/Th17 cells, myeloperoxidase (MPO) concentrations, and inflammatory cytokines and chemokines (tumor necrosis factor-α [TNF-α], IL-6, macrophage inflammatory protein [MIP]-2, monocyte chemoattractant protein-1 [MCP-1], and MIP-1α), as well as arginase 1 (Arg1) and signal transducers and activators of transcription 6 (STAT6) proteins, were measured at the end of the experiment.
30690433	5	2	part_of	CNC-HA/GM-CSF-Chi-NPs	798:818	arg1	CNC-HA/GM-CSF-Chi-NPs composite	GM-CSF		CNC-HA/GM-CSF-Chi-NPs composite		PUBTATOR	Site	GM-CSF	1437	composite	In this study, we focus on development and characterization of a novel CNC reinforced HA-based composite containing chitosan nanoparticles loaded with GM-CSF (CNC-HA/GM-CSF-Chi-NPs composite) as an effective wound dressing.
30690433	5	69	part_of	CNC	710:712	arg1	a novel CNC reinforced HA-based composite	CNC		a novel CNC reinforced HA-based composite		OGER	Site	CNC	P32418	composite	In this study, we focus on development and characterization of a novel CNC reinforced HA-based composite containing chitosan nanoparticles loaded with GM-CSF (CNC-HA/GM-CSF-Chi-NPs composite) as an effective wound dressing.
31306470	3	8	part_of	Env	647:649	arg1	an early Env sequence	Env		an early Env sequence		PUBTATOR	Site	Env	100616444	sequence	We therefore performed a direct and thorough comparison of a full-length unmodified Env trimer containing the transmembrane domain and the cytoplasmic tail, with the sequence matched soluble SOSIP trimer, both based on an early Env sequence (AMC011) from an HIV+ individual that developed bNAbs.
31306470	3	51	part_of	containing	514:523	arg1	a full-length unmodified Env trimer AND the transmembrane domain	a full-length unmodified Env trimer		the transmembrane domain		PUBTATOR	Site	Env trimer	100616444	domain	We therefore performed a direct and thorough comparison of a full-length unmodified Env trimer containing the transmembrane domain and the cytoplasmic tail, with the sequence matched soluble SOSIP trimer, both based on an early Env sequence (AMC011) from an HIV+ individual that developed bNAbs.
31306470	3	51	part_of	containing	514:523	arg1	a full-length unmodified Env trimer AND the cytoplasmic tail	a full-length unmodified Env trimer		the cytoplasmic tail		PUBTATOR	Site	Env trimer	100616444	tail	We therefore performed a direct and thorough comparison of a full-length unmodified Env trimer containing the transmembrane domain and the cytoplasmic tail, with the sequence matched soluble SOSIP trimer, both based on an early Env sequence (AMC011) from an HIV+ individual that developed bNAbs.
30143171	8	25	part_of	PCL/NC	941:946	arg1	electrospun PCL/NC composites	PCL/NC		electrospun PCL/NC composites		PUBTATOR	Site	PCL/NC	5252	composites	The mechanical properties, wettability and cellular compatibility of electrospun PCL/NC composites were improved as well.
30710585	6	35	part_of	PSP-AgNP	958:965	arg1	PSP-AgNP composites	PSP		PSP-AgNP composites		OGER	Site	PSP	O60542	composites	Such capping of AgNPs by PSP contributed to the stable dispersion of PSP-AgNP composites at room temperature for 12 months, as evidenced by visual inspection and multiple light scattering.
30196422	5	24	gly	derived	965:971	arg2	different model glycoproteins AND glycans	different model glycoproteins			glycans	Fterm		glycoproteins			Here, magnetic carbon nanocomposites (CNPs@Fe3O4 NCs) were used as a new MALDI matrix or co-matrix for the analysis of glycans derived from different model glycoproteins and human blood serum samples.
30196422	5	59	gly	used	897:900	arg2	magnetic carbon nanocomposites			magnetic carbon nanocomposites						nanocomposites	Here, magnetic carbon nanocomposites (CNPs@Fe3O4 NCs) were used as a new MALDI matrix or co-matrix for the analysis of glycans derived from different model glycoproteins and human blood serum samples.
30196422	5	74	gly	glycoproteins	994:1006	arg1	different model glycoproteins	different model glycoproteins				Fterm		glycoproteins			Here, magnetic carbon nanocomposites (CNPs@Fe3O4 NCs) were used as a new MALDI matrix or co-matrix for the analysis of glycans derived from different model glycoproteins and human blood serum samples.
29976057	4	4	part_of	amylase	558:564	arg1	the amylase@ferria composite	amylase		the amylase@ferria composite		Fterm	Site	amylase		composite	At 80 °C, the amylase@ferria composite demonstrates catalytic activity on the level of 10 units/mg and the starch hydrolysis rate comparable to free enzyme, while at 90 °C, the activity of amylase@ferria is at least twice higher than that of free amylase as a result of higher thermal stability of the composite.
29920370	6	49	part_of	PLA/MCC	892:898	arg1	PLA/MCC composite	MCC		PLA/MCC composite		OGER	Site	MCC		composite	X-ray Diffraction (XRD) analysis result showed an increase in crystallinity of PLA/RAMCC and reduction in water vapour permeability as compared to PLA film and PLA/MCC composite.
30243245	2	12	part_of	cellulase	305:313	arg1	two cellulase composites	cellulase		two cellulase composites		Fterm	Site	cellulase		composites	Physical adsorption strategy was employed to fabricate two cellulase composites, and the activity of composite was characterized by hydrolysis of carboxymethyl cellulose.
30498196	0	51	part_of	Mac-1	64:68	arg1	the αI-domain	Mac-1		the αI-domain		PUBTATOR	Site	Mac-1	3684	αI-domain	Cis interaction between sialylated FcγRIIA and the αI-domain of Mac-1 limits antibody-mediated neutrophil recruitment.
30566343	6	77	part_of	Bpa	1173:1175	arg1	an effective Bpa mutant peptide	Bpa		an effective Bpa mutant peptide		OGER	Site	Bpa	Q03001	peptide	After the initial discovery of an effective Bpa mutant peptide and optimization of the reaction conditions to enable efficient conjugation without concomitant UV-induced photodamage of the antibody, we assessed the scope of the photoconjugation reaction across different human and nonhuman antibodies and antibody mutants.
29298890	4	80	part_of	protein	727:733	arg1	three N-linked glycosylation sites	protein		three N-linked glycosylation sites		Fterm	Site	protein		sites	How the gPr80 accessory protein, with its three N-linked glycosylation sites, contributes to these resistance mechanisms is still not fully understood.
30534192	2	84	gly	glycoproteins	422:434	arg1	glycoproteins	glycoproteins				Fterm		glycoproteins			This precursor is then transferred en bloc on neo-synthesized proteins through the action of the oligosaccharyltransferase giving birth to glycoproteins.
31012794	5	45	part_of	FOS	929:931	arg1	The FOS composition	FOS		The FOS composition		OGER	Site	FOS	P01100	position	The FOS composition produced by Pectinex Ultra SP-L under the UHP was 1-kestose (GF2), nystose (GF3), and 1F-fructofuranosylnystose (GF4), whereas the FOS produced by inulinase composed of only GF2 and GF3.
31515898	1	44	part_of	insulin-like	138:149	arg1	a heterodimeric peptide	insulin		a heterodimeric peptide		OGER	Site	insulin	P01308	peptide	Crustacean insulin-like androgenic gland factor (IAG) of Macrobrachium rosenbergii, a heterodimeric peptide having both four disulfide bonds and an N-linked glycan, was synthesized by the combination of solid-phase peptide synthesis and the regioselective disulfide formation reactions.
30093019	3	31	part_of	Glu-CPS-1	428:436	arg1	Glu-CPS-1 chemical composition	CPS-1		Glu-CPS-1 chemical composition		OGER	Site	CPS-1	P31327	position	WL-CPS-1, NaCl-CPS-1 and Glu-CPS-1 chemical composition differed in sugar and uronic acid contents, and they were composed of nine constituent monosaccharides and one uronic acid with different ratios, with the average molecular weights of 1.02 × 103, 1.12 × 103 and 1.33 × 103 kDa, respectively.
30861377	2	19	gly	disaccharide	419:430	arg1	sequence			sequence	sequence		Site			sequence	Synthesis of the pentasaccharide is accomplished by using a common disaccharide in sequence and finally attaching the rare sugar unit.
30447362	8	58	part_of	PHB	1393:1395	arg1	the composites	PHB		the composites		OGER	Site	PHB	P35232	composites	The thermogravimetric analysis of the composites with PHB treated by plasma showed a higher thermal stability compared to the composites of TPS and untreated PHB.
29410268	7	13	part_of	TPS/CNF	1213:1219	arg1	the tan δ peak position	TPS/CNF		the tan δ peak position		PUBTATOR	Site	TPS/CNF	4868	position	The storage modulus, loss modulus, and the tan δ peak position of TPS/CNF nanocomposites improved in comparison with the TPS matrix.
29589895	12	19	gly	used	2120:2123	arg2	these composites			these composites						composites	These studies indicate the potential use of GO to prepare free SA-CS-Col scaffolds with preserved porous structure with elongated Col fibrils and that these composites, which are biocompatible and stable in a biological medium, could be used for application in engineering bone tissues.
30196422	1	13	gly	glycosylated	122:133	arg1	all known proteins	all known proteins				Fterm		proteins			More than 50% of all known proteins are glycosylated, which is critical for many biological processes such as protein folding and signal transduction.
31013876	7	30	part_of	beta-cyclodextrin	1529:1545	arg1	The optimal mixture composition	beta-cyclodextrin		The optimal mixture composition		Fterm	Site	beta-cyclodextrin		position	The optimal mixture composition was 0.54 g of sodium caseinate, 10 g of skim milk, 8.96 g of resistant-maltodextrin, and 0.5 g of beta-cyclodextrin.
30304700	7	54	gly	motif	1312:1316	arg1	the polysaccharide motif composition				the polysaccharide motif composition						We noted that the intensity of those alterations is directly dependent on the polysaccharide motif composition (ratio M/G).
31022483	3	14	part_of	NCs	558:560	arg1	composition	NCs		composition		OGER	Site	NCs		position	The composition and surface morphology of Fe-CS NCs were studied by SEM, BET, XRD, TEM, FTIR and zeta potential meter.
30312748	13	126	part_of	CS	2469:2470	arg1	MET	CS 1		MET		OGER	AminoAcid	CS 1	O94985	MET	Lyophilized CAR: CS 1:3 (sample DL13), MET:CS 1:3 (sample DL8) and MET:CAR 3:1 (sample DL1) wafers seem to be a very promising system for the administration of low dose aspirin for older patients with dysphagia.
31360991	5	16	gly	had	974:976	arg1	The quantified fragments AND trisaccharide-repeating compositions			The quantified fragments	trisaccharide-repeating compositions					fragments	The quantified fragments mainly had trisaccharide-repeating compositions and showed significant differences in fucosylation (including its sulfation) among different species of sea cucumbers.
30690433	7	18	part_of	CNC-HA/GM-CSF-Chi-NPs	1211:1231	arg1	CNC-HA/GM-CSF-Chi-NPs composite	GM-CSF		CNC-HA/GM-CSF-Chi-NPs composite		PUBTATOR	Site	GM-CSF	1437	composite	In vivo investigation showed that, after 13 d, the wounds covered with CNC-HA/GM-CSF-Chi-NPs composite could reach to nearly full wound closure and complete re-epithelialization compared to the normal saline treated wounds which exhibited nearly 70% of wound size reduction.
31744759	4	44	part_of	CNC-based	566:574	arg1	The CNC-based nanocomposite	CNC		The CNC-based nanocomposite		OGER	Site	CNC	P32418	nanocomposite	The CNC-based nanocomposite with the 5CB, 5OCB, 5FCB, and 5PCH liquid crystals, have been obtained by the modified Langmuir technique.
30328567	3	87	gly	glycosylated	887:898	arg1	glycosylated serum protein	glycosylated serum protein				Fterm		protein			After mediation for 10 weeks, fasting blood glucose (FBG), glycosylated hemoglobin (GHB), glycosylated serum protein (GSP), fructoseamine (FRA), aldose reductase (AR), advanced glycation end products (AGEs) in serum were measured by enzyme linked immunosorbent assay (ELISA) method; the expression of receptor of AGEs (RAGE) in myocardial tissue were observed by immunohistochemical method; and p-Jun N-terminal kinase (p-JNK), caspase-3, B-cell lymphoma-2 (bcl-2) protein expression in myocardial tissue were measured by Western blotting.
30328567	3	98	gly	glycosylated	856:867	arg1	glycosylated hemoglobin	glycosylated hemoglobin				Fterm		hemoglobin			After mediation for 10 weeks, fasting blood glucose (FBG), glycosylated hemoglobin (GHB), glycosylated serum protein (GSP), fructoseamine (FRA), aldose reductase (AR), advanced glycation end products (AGEs) in serum were measured by enzyme linked immunosorbent assay (ELISA) method; the expression of receptor of AGEs (RAGE) in myocardial tissue were observed by immunohistochemical method; and p-Jun N-terminal kinase (p-JNK), caspase-3, B-cell lymphoma-2 (bcl-2) protein expression in myocardial tissue were measured by Western blotting.
29734031	4	48	gly	used	819:822	arg2	The LDH-CMC composite			The LDH-CMC composite						composite	The LDH-CMC composite was used as a support matrix for the immobilization of horseradish peroxidase (HRP) on the glass carbon (GC) electrode to construct a biosensor that provides a biocompatible microenvironment for HRP and a pathway for H2O2 diffusion via the high surface area.
29428383	6	73	gly	sugars	1037:1042	arg1	chemical composition			chemical composition	chemical composition		Site			position	Compared with LP-F, PSP has more reducing sugars and uronic acids in chemical composition and higher contents of xylose, glucose and galactose in monosaccharide composition.
29397980	5	3	gly	glycopeptide	1136:1147	arg2	another macrocyclic glycopeptide chiral selector			another macrocyclic glycopeptide chiral selector						glycopeptide	EE determination of verubecestat is easily performed on NicoShell, another macrocyclic glycopeptide chiral selector bonded to 2.7 μm superficially porous particles.
30951779	5	72	gly	glycoprotein	969:980	arg1	glycoprotein	glycoprotein				Fterm		glycoprotein			The EPS purified by ion exchange column chromatography and gel chromatography was a non-reducing sugar and glycoprotein with pyranoid ring by Fourier transform infrared spectroscopy (FT-IR) analysis, displayed a porous network structure by scanning electron microscope (SEM) observation and exhibited a high thermal stability with the degradation temperature of 303.9 °C by thermogravimetric analysis (TG/DSC).
32089591	0	16	gly	glycosylation	76:88	arg1	bovine milk oligosaccharides				bovine milk oligosaccharides						Production of functional mimics of human milk oligosaccharides by enzymatic glycosylation of bovine milk oligosaccharides.
30778562	1	54	part_of	PAL	165:167	arg1	the palygorskite (PAL) composites	PAL		the palygorskite (PAL) composites		OGER	Site	PAL	Q9P2V4	composites	This work aimed to investigate the effects of the palygorskite (PAL) composites on the growth performance and antioxidant status in broiler chickens.
29684453	2	48	part_of	multi-walled	524:535	arg1	Two multi-walled carbon nanotube (MWCNT) biocomposites	multi		Two multi-walled carbon nanotube (MWCNT) biocomposites		OGER	Site	multi		biocomposites	Two multi-walled carbon nanotube (MWCNT) biocomposites based on Derivative 4 were also prepared.
29105226	6	50	gly	information	1332:1342	arg1	composition			position, sequence						position, sequence	RESULTS In a database search of reversed-phase liquid chromatography/tandem mass spectrometry (RPLC/MS/MS) datasets of the N-glycome enriched from OVCAR-3 ovarian cancer cells, with FDR ≤1% and number of best hits (NoBHs) = 1-30, 1525 N-glycans with comprehensive primary structural information (composition, sequence and linkage) were identified and visualized; among these 1525 N-glycans, 559 had NoBHs = 1, i.e. their structures were uniquely identified.
30184795	2	79	part_of	HAP-GA	422:427	arg1	the synthesized core-shell HAP-GA nanocomposite	HAP		the synthesized core-shell HAP-GA nanocomposite		OGER	Site	HAP	O95197	nanocomposite	The crystallite size and morphology of the synthesized core-shell HAP-GA nanocomposite was evaluated by X-ray diffraction measurement and transmission electron microscopy.
30819031	5	40	part_of	PVA/MCC	1061:1067	arg1	The PVA/MCC composite	PVA		The PVA/MCC composite		OGER	Site	PVA	P32926	composite	RESULTS: The PVA/MCC composite exhibited a good stress-strain behavior as well as a close correlation between MCC content on tensile, thermal, and degradation properties.
30582698	5	59	gly	glycoproteins	750:762	arg1	the actual glycoproteins	the actual glycoproteins				Fterm		glycoproteins			Even though this glycan specificity of MGL is well described, there is a lack of understanding of the actual glycoproteins that bind MGL.
30840866	0	21	part_of	chitin/gelatin	47:60	arg1	microfibrillated chitin/gelatin composites	chitin		microfibrillated chitin/gelatin composites		Fterm	Site	chitin		composites	Preparation and properties of microfibrillated chitin/gelatin composites.
30976088	2	18	gly	glycoprotein	398:409	arg1	a large, hexameric extracellular matrix glycoprotein	a large, hexameric extracellular matrix glycoprotein				Fterm		glycoprotein			Tenascin-C (TNC) is a large, hexameric extracellular matrix glycoprotein identified in breast milk and genital fluids that broadly neutralizes HIV-1 via interaction with the HIV-1 Envelope (Env) variable 3 (V3) loop.
30641994	7	1	gly	strain	1479:1484	arg1	high polysaccharide content breeding	strain			high polysaccharide content breeding	Fterm		strain			These results indicated that ARTP is an efficient and practical method for high polysaccharide content breeding of the H. erinaceus strain and this provided a reference for obtaining high quality resources and healthy product development from H. erinaceus.
30658444	4	8	gly	N/O-glycosylation	718:734	arg2	N/O-glycosylation sites			N/O-glycosylation sites						sites	"Bottom-up" mass spectrometric analysis was used for primary sequence analysis, evaluation of N/O-glycosylation sites and quantification of methionine oxidation.
29397980	0	47	gly	glycopeptide	12:23	arg2	Macrocyclic glycopeptide chiral selectors			Macrocyclic glycopeptide chiral selectors						glycopeptide	Macrocyclic glycopeptide chiral selectors bonded to core-shell particles enables enantiopurity analysis of the entire verubecestat synthetic route.
29561781	2	3	gly	N-glycosylated	292:305	arg1	Many proteins	Many proteins				Fterm		proteins			Many proteins that are secreted by eukaryotes are N-glycosylated.
31887386	10	69	gly	utilized	1814:1821	arg2	the DSF-VE composites			the DSF-VE composites						composites	Furthermore, the DSF-VE composites have been successfully utilized for various potential applications, such as fabrication of a table fan blade, an engine guard for two-wheelers and self-motor guard for four wheelers.
30245679	5	39	gly	attached	624:631	arg1	the S-layer glycoprotein AND the N-linked glycan	the S-layer glycoprotein			the N-linked glycan	Fterm		glycoprotein			In the following, we report that the N-linked glycan attached to the S-layer glycoprotein of the haloarchaea Halorubrum sp.
30245679	5	63	gly	glycoprotein	648:659	arg1	the S-layer glycoprotein	the S-layer glycoprotein				Fterm		glycoprotein			In the following, we report that the N-linked glycan attached to the S-layer glycoprotein of the haloarchaea Halorubrum sp.
29670011	2	0	gly	glycoprotein	294:305	arg1	the glycoprotein N-glycan				the glycoprotein N-glycan						α1,3-Fucosyltransferase (OsFucT) is responsible for transferring α1,3-linked fucose residues to the glycoprotein N-glycan in plants.
31207008	5	51	gly	domain	805:810	arg1	a single N-glycan species			domain	a single N-glycan species					domain	While mAb produced in ∆XFT carried a single N-glycan species at the Fc domain, namely GnGn structures, WT produced mAb exhibited a mixture of N-glycans including the typical plant GnGnXF3 glycans, accompanied by incompletely processed and oligomannosidic structures.
30184795	11	12	part_of	HAP	1697:1699	arg1	The drug-loaded core-shell HAP composites	HAP		The drug-loaded core-shell HAP composites		OGER	Site	HAP	O95197	composites	The drug-loaded core-shell HAP composites were subjected to microbial studies, hemolytic studies and MTT assay to assess their biocompatibility.
30839970	11	79	gly	composition	1669:1679	arg1	d-gal-induced mice			position	d-gal-induced mice					position	In addition, the analysis of Spearman's rank correlation suggested that the protective effects of EPS correlated with manipulating the gut microbiota composition in d-gal-induced mice.
29587830	3	95	gly	composition	612:622	arg1	complex polysaccharides			position	complex polysaccharides					position	Most of the latter are generalists and consume red, green, and brown macroalgae, three distinct lineages characterized by a specific composition in complex polysaccharides, which represent half of their biomass.
29853074	7	45	part_of	CaP/CS	1078:1083	arg1	this CaP/CS composite	CaP		this CaP/CS composite		OGER	Site	CaP		composite	These results indicate that this CaP/CS composite could be a promising candidate for bone tissue engineering.
31361180	6	45	part_of	Medium	620:625	arg1	Medium composition	Medium		Medium composition		OGER	Site	Medium		position	Medium composition is one of the major aspects for the production of EPS from Lactobacillus sp., optimization of medium components can help to enhance the synthesis of EPS .
31005573	7	42	gly	leucine-rich	1377:1388	arg1	small leucine-rich proteoglycans			leucine	small leucine-rich proteoglycans					leucine	These results complement our knowledge about the distribution of small leucine-rich proteoglycans in human Pacinian corpuscles, and help to understand the composition of the extracellular matrix in these sensory formations.
31323374	4	45	part_of	GP/curcumin	673:683	arg1	GP/curcumin composites	curcumin		GP/curcumin composites		Fterm	Site	curcumin		composites	GP/curcumin composites were prepared using controlled evaporation of the organic solvent and their anti-oxidative effect and anti-inflammatory potential were tested on THP1‑XBlue™‑MD2‑CD14 human monocytes cell line.
30165147	1	39	part_of	PCC	224:226	arg1	nano PCC tapioca starch hybrid composites	PCC		nano PCC tapioca starch hybrid composites		OGER	Site	PCC		composites	This study focuses on the synthesis and characterization of CNF obtained from ramie fibers reinforced with nano PCC tapioca starch hybrid composites.
30323560	1	32	gly	used	379:382	arg2	these composites			these composites						composites	PURPOSE The aims of this research were to combine α-hemihydrate calcium sulfate/octacalcium phosphate (α-CSH/OCP) with sodium hyaluronate (SH) or SH sulfate (SHS) to determine whether these composites can be used as a new type of bone repair material.
30268077	7	57	gly	N-glycosylation	1718:1732	arg2	N-glycosylation sites			N-glycosylation sites						sites	In spite of the high sequence homology, our results show different specificity of substrate for these proteins, maybe due to other dissimilar characteristics, such as isoelectric points or the number of N-glycosylation sites, which could determine their enzymatic properties and their distinct action in the cell walls.
29408578	2	28	part_of	SA/HEC/HA	318:326	arg1	The SA/HEC/HA composites	HEC		The SA/HEC/HA composites		OGER	Site	HEC	O14777	composites	The SA/HEC/HA composites were synthesized using the lyophilization technique and further cross-linked in the presence of calcium ions to form composite hydrogel networks.
31274284	11	20	gly	regions	1488:1494	arg1	the UV regions			the UV regions						regions	The transmittance in the UV regions (A, B, and C) ranged from 1 to 48.51%, increasing with the poly(vinyl alcohol) concentration.
31515898	0	47	gly	N-glycosylated	22:35	arg1	N-glycosylated insulin-like androgenic gland factor	N-glycosylated insulin-like androgenic gland factor				Fterm		factor			Chemical synthesis of N-glycosylated insulin-like androgenic gland factor from the freshwater prawn Macrobrachium rosenbergii.
31054677	0	35	gly	residues	102:109	arg1	polysaccharides			residues	polysaccharides					residues	Characterization of physicochemical properties and antioxidant activity of polysaccharides from shoot residues of bamboo (Chimonobambusa quadrangularis): Effect of drying procedures.
31726129	6	15	part_of	HAP	981:983	arg1	Zn-Mn HAP composite	HAP		Zn-Mn HAP composite		OGER	Site	HAP	O95197	composite	0.1 M of (Zn-Mn HAP)/CMC/PVP (20, 40, 60 wt% of Zn-Mn HAP composite) showed good physical properties, in which the 60 wt% showed 98% of porosity with least swelling and the tensile strength was measured to be 67 MPa.
31732053	0	22	part_of	protein	108:114	arg1	protein composition	protein		protein composition		Fterm	Site	protein		position	Evaluation of head and broken rice of long grain Indica rice cultivars: Evidence for the role of starch and protein composition to head rice recovery.
29733648	9	12	part_of	CNC	1789:1791	arg1	CNC chiral fragments	CNC		CNC chiral fragments		OGER	Site	CNC	P32418	fragments	TEM, SEM, and CD indicate CNC chiral fragments within a MC/CNC composite gel.
31005573	0	51	gly	leucine-rich	27:38	arg1	small leucine-rich proteoglycans			leucine	small leucine-rich proteoglycans					leucine	Class I and Class II small leucine-rich proteoglycans in human cutaneous pacinian corpuscles.
30778562	4	4	part_of	PAL	569:571	arg1	PAL composites	PAL		PAL composites		OGER	Site	PAL	Q9P2V4	composites	The results showed that PAL composites were found to exhibit similar effects on growth performance as CTC (P > 0.05).
31766842	9	73	part_of	NRs	1039:1041	arg1	The composite	ZnO NRs		The composite		OGER	Site	ZnO NRs	O43776	composite	The composite of longer ZnO NRs and CNF showed 2.8 × 103 times higher photocurrent and responsivity performance.
30223737	0	31	part_of	hydroxyapatite/β-cyclodextrin-based	43:77	arg1	porous hydroxyapatite/β-cyclodextrin-based polyurethane composite	β-cyclodextrin		porous hydroxyapatite/β-cyclodextrin-based polyurethane composite		Fterm	Site	β-cyclodextrin		composite	Preparation and characterization of porous hydroxyapatite/β-cyclodextrin-based polyurethane composite scaffolds for bone tissue engineering.
30372996	3	54	part_of	HMOs	670:673	arg1	the HMOs composition	HMOs		the HMOs composition		OGER	Site	HMOs	P00540	position	Analytical methods that can identify the differences in the HMOs composition and concentrations are a fundamental tool in HMOs research.
30184795	3	8	part_of	GA-HAP	552:557	arg1	GA-HAP nanocomposite	HAP		GA-HAP nanocomposite		OGER	Site	HAP	O95197	nanocomposite	The crystallite size of GA-HAP nanocomposite is markedly decreased from 89 nm to 63 nm when the concentration of GA in the reaction mixture is increased from 0 to 10%.
29853102	1	19	part_of	GNS-CaP-CS/AZ91D	353:368	arg1	micro-arc oxidized-AZ91D (MAO-AZ91D) based calcium phosphate (CaP)-chitosan (CS) (GNS-CaP-CS/AZ91D) composite	GNS		micro-arc oxidized-AZ91D (MAO-AZ91D) based calcium phosphate (CaP)-chitosan (CS) (GNS-CaP-CS/AZ91D) composite		OGER	Site	GNS	P15586	composite	To improve the biodegradable performance and osteoinductivity of magnesium (Mg) alloy, a novel graphene nanosheet (GNS) doped micro-arc oxidized-AZ91D (MAO-AZ91D) based calcium phosphate (CaP)-chitosan (CS) (GNS-CaP-CS/AZ91D) composite was fabricated.
30852274	5	7	part_of	CMC2/TEC	959:966	arg1	two biocomposites	TEC		two biocomposites		OGER	Site	TEC	P42680	biocomposites	Study of antibacterial activities of two biocomposites of CMC1/TEC and CMC2/TEC with lower release rates and lower concentrations of CIP than other biocomposites revealed that likely N,N,N-triethyl chitosan could considerably help to reduce the consumption of ciprofloxacin.
30852274	5	18	part_of	CMC1/TEC	946:953	arg1	two biocomposites	TEC		two biocomposites		OGER	Site	TEC	P42680	biocomposites	Study of antibacterial activities of two biocomposites of CMC1/TEC and CMC2/TEC with lower release rates and lower concentrations of CIP than other biocomposites revealed that likely N,N,N-triethyl chitosan could considerably help to reduce the consumption of ciprofloxacin.
31163085	9	30	gly	glycosylation	1030:1042	arg1	plasma protein fucosylation	HNF1A			plasma protein fucosylation	PUBTATOR		HNF1A	6927		The majority of revealed loci contained genes that encode enzymes directly involved in glycosylation (FUT3/FUT6, FUT8, B3GAT1, ST6GAL1, B4GALT1, ST3GAL4, MGAT3 and MGAT5) and a known regulator of plasma protein fucosylation (HNF1A).
31515898	5	22	gly	glycosylated	980:991	arg1	other glycosylated four-disulfide insulin-like peptides			other glycosylated four-disulfide insulin-like peptides						peptides	This is the first report for the chemical synthesis of insulin-like heterodimeric glycopeptide having three interchain disulfides, and the synthetic strategy shown here might be useful for the synthesis of other glycosylated four-disulfide insulin-like peptides.
31515898	5	26	gly	glycopeptide	850:861	arg2	insulin-like heterodimeric glycopeptide			insulin-like heterodimeric glycopeptide						glycopeptide	This is the first report for the chemical synthesis of insulin-like heterodimeric glycopeptide having three interchain disulfides, and the synthetic strategy shown here might be useful for the synthesis of other glycosylated four-disulfide insulin-like peptides.
31360991	4	39	part_of	FCS	849:851	arg1	These depolymerized FCS fragments	FCS		These depolymerized FCS fragments		Cterm	Site	FCS		fragments	These depolymerized FCS fragments were quantified and compared using the glycomics software package, GlycReSoft.
31472224	3	30	part_of	-α-Galp-	525:532	arg1	The unit composition	Galp		The unit composition		OGER	Site	Galp	Q9UBC7	position	The unit composition was →4)-β-Glcp-(1 → 2)-α-Glcp-(1 → 2)-α-Galp-(1 → 4)-α-Galp-(1→ bone, and in →2)-α-Galp-(1→) with a branching point at C6 of β-Manp.
30365990	6	41	part_of	PVA	741:743	arg1	PVA composition	PVA		PVA composition		OGER	Site	PVA	P32926	position	After 7 days, all blended scaffolds showed low degradation rate with the increased of PVA composition.
31284002	6	42	part_of	PVA	1122:1124	arg1	PVA composition	PVA		PVA composition		OGER	Site	PVA	P32926	position,	The results revealed that the gelation (%) of hydrogel membranes increased dramatically with PVA composition, irradiation dose and glycerol content up to 20%; however, it decreased with AgNP incorporation due to the viscosity of copolymer composition is hyper-increased.
33463242	3	20	part_of	CS/HPC/nHA	594:603	arg1	composition	HPC		composition		OGER	Site	HPC	Q05920	position	The structure and composition of CS/HPC/nHA were characterized by scanning electron microscopy, transmission electron miscroscopy, Fourier transform infrared, and X-ray photoelectron spectroscopy, and the porosity, swelling ratio, and mechanical properties of the scaffold were also tested.
31403146	0	8	part_of	Impact	0:5	arg1	chemical composition	Impact		chemical composition		OGER	Site	Impact	Q9P2X3	position,	Impact of different roasting conditions on chemical composition, sensory quality and physicochemical properties of waxy-barley products.
31276724	6	19	part_of	T-α-Galp	1150:1157	arg1	the O-6 position	Galp		the O-6 position		OGER	Site	Galp	Q9UBC7	position	The PSP-1b1 backbone consists of →4)-α-Galp-(1 → 4)-α-Galp-(1 → 2)-α-Manp-(1 → 4)-α-Galp-(1 → 2)-α-Manp-(1 → 4)-α-Galp-(1 → 4)-α-Galp-(1 → 2)-α-Manp-(1 → 4)-α-Galp-(1 → 2)-α-Manp-(1 → 4)→, with branches of α-1,6-Manp, β-1,6-Glcp, β-1,3,6-Glcp, α-1,3-Manp, α-1,6-Galp, α-1,3-Fucp, T-α-Glcp and T-α-Galp on the O-6 position of α-Manp of the main chain, and secondary branches linked to the O-6 position of β-Glcp of the major branch.
31276724	6	24	part_of	α-1,6-Galp	1113:1122	arg1	the O-6 position	Galp		the O-6 position		OGER	Site	Galp	Q9UBC7	position	The PSP-1b1 backbone consists of →4)-α-Galp-(1 → 4)-α-Galp-(1 → 2)-α-Manp-(1 → 4)-α-Galp-(1 → 2)-α-Manp-(1 → 4)-α-Galp-(1 → 4)-α-Galp-(1 → 2)-α-Manp-(1 → 4)-α-Galp-(1 → 2)-α-Manp-(1 → 4)→, with branches of α-1,6-Manp, β-1,6-Glcp, β-1,3,6-Glcp, α-1,3-Manp, α-1,6-Galp, α-1,3-Fucp, T-α-Glcp and T-α-Galp on the O-6 position of α-Manp of the main chain, and secondary branches linked to the O-6 position of β-Glcp of the major branch.
31849912	5	6	gly	glycosylation	912:924	arg1	multiple V. cholerae proteins	multiple V. cholerae proteins				Fterm		proteins			We demonstrate that PglLVc is required for the glycosylation of multiple V. cholerae proteins, including periplasmic chaperones such as DegP, that are required for efficient type II-dependent secretion.
31515898	1	50	gly	having	235:240	arg1	Crustacean insulin-like androgenic gland factor AND an N-linked glycan	factor		peptide	an N-linked glycan	Fterm		factor		peptide	Crustacean insulin-like androgenic gland factor (IAG) of Macrobrachium rosenbergii, a heterodimeric peptide having both four disulfide bonds and an N-linked glycan, was synthesized by the combination of solid-phase peptide synthesis and the regioselective disulfide formation reactions.
30184795	4	57	part_of	GA-HAP	869:874	arg1	10% GA-HAP composites	HAP		10% GA-HAP composites		OGER	Site	HAP	O95197	composites	Transmission electron micrographs confirm encapsulation of GA over the HAP particles, leading to the formation of GA shell-HAP core assembly, which is quite evident for 10% GA-HAP composites.
31499989	6	69	part_of	LDHs-β-CD-HPG	1140:1152	arg1	LDHs-β-CD-HPG polymer composites	LDHs-β-CD		LDHs-β-CD-HPG polymer composites		PUBTATOR	Site	LDHs-β-CD	65057	composites	The results based on various biological assays suggest that LDHs-β-CD-HPG polymer composites are of low cytotoxicity and their cell uptake behavior can be effectively traced using confocal laser imaging.
29288461	4	17	part_of	variants	926:933	arg1	monosaccharide composition	variants		monosaccharide composition		Fterm	Site	variants		position	Here we describe a strategy based on the combination of an approach to artificially increase the intracellular level of c-di-GMP in virtually any gram-negative bacteria with a high throughput screening (HTS) for the identification of monosaccharide composition and carbohydrate fingerprinting of novel EPS, or modified variants, that can be involved in host-bacteria interactions.
30243245	7	29	part_of	cellulase-MOF	1048:1060	arg1	developing cellulase-MOF composite	MOF		developing cellulase-MOF composite		OGER	Site	MOF	Q9H7Z6	composite	The findings suggest the promising future of developing cellulase-MOF composite with ultrahigh activities and stabilities for practical application.
32617037	12	9	part_of	positions	2184:2192	arg1	the main chain	chain		positions		OGER	Site	chain	P05231	positions	CONCLUSION we assumed that the immunostimulatory activity of RGP-AP-I may be due to the RG-I structure, which comprises a main chain with a repeating linkage unit, [→2)-Rhap-(1→4)-GalAp-(1→] and three groups of side chains such as (1→5)-linked arabinan, (1→4)-linked galactan, and arabino-β-3,6-galactan, which branch at the C(O)4 positions of Rha residues in the main chain of RGP-AP-I.
32617037	12	49	part_of	chain	2222:2226	arg1	the C(O)4 positions	chain		the C(O)4 positions		OGER	Site	chain	P05231	positions	CONCLUSION we assumed that the immunostimulatory activity of RGP-AP-I may be due to the RG-I structure, which comprises a main chain with a repeating linkage unit, [→2)-Rhap-(1→4)-GalAp-(1→] and three groups of side chains such as (1→5)-linked arabinan, (1→4)-linked galactan, and arabino-β-3,6-galactan, which branch at the C(O)4 positions of Rha residues in the main chain of RGP-AP-I.
29410268	8	12	part_of	TPS/CNF	1349:1355	arg1	TPS/CNF nanocomposites	TPS/CNF		TPS/CNF nanocomposites		PUBTATOR	Site	TPS/CNF	4868	nanocomposites	These findings confirmed the enhancement of mechanical properties of TPS/CNF nanocomposites.
31499114	9	2	part_of	CNC/polymer	1961:1971	arg1	the mesomorphic order-retaining CNC/polymer composites	CNC		the mesomorphic order-retaining CNC/polymer composites		OGER	Site	CNC	P32418	composites	Thermogravimetry showed that the mineralization definitely improved the thermal performance (heat/flame resistance) of the mesomorphic order-retaining CNC/polymer composites.
31852774	1	48	gly	glycoproteins	145:157	arg1	many glycoproteins	many glycoproteins				Fterm		glycoproteins			Among many glycoproteins within the plant secretory system, KORRIGAN1 (KOR1), a membrane-anchored endo-β-1,4-glucanase involved in cellulose biosynthesis, provides a link between N-glycosylation, cell wall biosynthesis, and abiotic stress tolerance.
29915530	4	46	part_of	residues	716:723	arg1	the GluN3A subunit	GluN3A subunit		residues		PUBTATOR	AminoAcid	GluN3A subunit	191573	asparagine residues	Using a combination of microscopy, biochemistry, and electrophysiology in mammalian cell lines and rat hippocampal neurons, we found that two asparagine residues (N203 and N368) in the GluN1 subunit and three asparagine residues (N145, N264 and N275) in the GluN3A subunit are required for surface delivery of GluN3A-containing NMDARs.
29915530	4	46	part_of	residues	716:723	arg1	the GluN1 subunit	GluN1 subunit		residues		PUBTATOR	AminoAcid	GluN1 subunit	24408	asparagine residues	Using a combination of microscopy, biochemistry, and electrophysiology in mammalian cell lines and rat hippocampal neurons, we found that two asparagine residues (N203 and N368) in the GluN1 subunit and three asparagine residues (N145, N264 and N275) in the GluN3A subunit are required for surface delivery of GluN3A-containing NMDARs.
29915530	4	71	part_of	residues	783:790	arg1	the GluN3A subunit	GluN3A subunit		residues		PUBTATOR	AminoAcid	GluN3A subunit	191573	asparagine residues	Using a combination of microscopy, biochemistry, and electrophysiology in mammalian cell lines and rat hippocampal neurons, we found that two asparagine residues (N203 and N368) in the GluN1 subunit and three asparagine residues (N145, N264 and N275) in the GluN3A subunit are required for surface delivery of GluN3A-containing NMDARs.
29915530	4	71	part_of	residues	783:790	arg1	the GluN1 subunit	GluN1 subunit		residues		PUBTATOR	AminoAcid	GluN1 subunit	24408	asparagine residues	Using a combination of microscopy, biochemistry, and electrophysiology in mammalian cell lines and rat hippocampal neurons, we found that two asparagine residues (N203 and N368) in the GluN1 subunit and three asparagine residues (N145, N264 and N275) in the GluN3A subunit are required for surface delivery of GluN3A-containing NMDARs.
29298890	4	68	gly	glycosylation	760:772	arg2	three N-linked glycosylation sites			three N-linked glycosylation sites						sites	How the gPr80 accessory protein, with its three N-linked glycosylation sites, contributes to these resistance mechanisms is still not fully understood.
29898432	4	39	part_of	1:3	859:861	arg1	three compositions	1:3 CBG		three compositions		OGER	Site	1:3 CBG	P08185	positions	Then, the cyclic glucan-betulinic acid complexes were prepared in three compositions of 1:1, 1:2 and 1:3 CBG:BA.
29853074	3	13	part_of	CaP/CS	556:561	arg1	CaP/CS composites	CaP		CaP/CS composites		OGER	Site	CaP		composites	The hydrophilicity of the coatings was increased by performing NaOH post-treatment of CaP/CS composites, which also affected apatite formation.
31780773	5	51	gly	fucosylated	719:729	arg1	3'-sialyl N-acetyllactosamine				3'-sialyl N-acetyllactosamine						Chemical analysis revealed the presence of glycan fucosylated oligosaccharides, tetraose, trisaccharides, iso-B-Pentasaccharides, sialyllactose, oligomannose, galacto-N-biose, difucosyl-para-lacto-N-neohexaose, 3'-sialyl N-acetyllactosamine and isoglobotriaose-β-N(Acetyl)-Propargyl in all extracted EPSs.
31780773	5	51	gly	fucosylated	719:729	arg1	trisaccharides				trisaccharides						Chemical analysis revealed the presence of glycan fucosylated oligosaccharides, tetraose, trisaccharides, iso-B-Pentasaccharides, sialyllactose, oligomannose, galacto-N-biose, difucosyl-para-lacto-N-neohexaose, 3'-sialyl N-acetyllactosamine and isoglobotriaose-β-N(Acetyl)-Propargyl in all extracted EPSs.
31780773	5	51	gly	fucosylated	719:729	arg1	glycan fucosylated oligosaccharides				glycan fucosylated oligosaccharides						Chemical analysis revealed the presence of glycan fucosylated oligosaccharides, tetraose, trisaccharides, iso-B-Pentasaccharides, sialyllactose, oligomannose, galacto-N-biose, difucosyl-para-lacto-N-neohexaose, 3'-sialyl N-acetyllactosamine and isoglobotriaose-β-N(Acetyl)-Propargyl in all extracted EPSs.
31780773	5	51	gly	fucosylated	719:729	arg1	iso-B-Pentasaccharides				iso-B-Pentasaccharides						Chemical analysis revealed the presence of glycan fucosylated oligosaccharides, tetraose, trisaccharides, iso-B-Pentasaccharides, sialyllactose, oligomannose, galacto-N-biose, difucosyl-para-lacto-N-neohexaose, 3'-sialyl N-acetyllactosamine and isoglobotriaose-β-N(Acetyl)-Propargyl in all extracted EPSs.
31835712	6	28	part_of	enzyme	1184:1189	arg1	the glycosyl hydrolase domain	enzyme		the glycosyl hydrolase domain		Fterm	Site	enzyme		domain	We further report on the successful production and purification of the glycosyl hydrolase domain of this enzyme and its use to gain further insight into its substrate specificity using synthetic mannoside acceptors as well as LM and phosphatidyl-myo-inositol mannoside precursors purified from mycobacteria.
31147052	4	38	part_of	PPy-ZnO	461:467	arg1	The nanosized PPy-ZnO (50-150 nm) composites	PPy		The nanosized PPy-ZnO (50-150 nm) composites		OGER	Site	PPy	P01298	composites	The nanosized PPy-ZnO (50-150 nm) composites covered the BC surface.
30819031	0	77	part_of	PVA/cellulose	24:36	arg1	PVA/cellulose fiber composites	PVA		PVA/cellulose fiber composites		OGER	Site	PVA	P32926	composites	Modulable properties of PVA/cellulose fiber composites.
29410370	1	63	gly	nanocomposites	252:265	arg1	soluble soybean polysaccharide			nanocomposites	soluble soybean polysaccharide					nanocomposites	This research aims to characterization of soluble soybean polysaccharide (SSPS) and development of a biodegradable SSPS nanocomposites prepared using various concentrations of TiO2 nanoparticles.
30065236	2	82	part_of	gut	466:468	arg1	gut microbiota composition	gut		gut microbiota composition		PUBTATOR	Site	gut	110006	position	The present study aimed to investigate whether D. indusiata polysaccharide (DIP) could modulate the recovery of gut microbiota composition and intestinal barrier function after broad-spectrum antibiotic-driven dysbiosis.
31284003	3	41	gly	used	529:532	arg2	A porous xylan/poly(acrylic acid)/graphite oxide nanocomposite			A porous xylan/poly(acrylic acid)/graphite oxide nanocomposite						nanocomposite	A porous xylan/poly(acrylic acid)/graphite oxide nanocomposite was prepared by graft polymerization and used for adsorption of cationic ethyl violet dye in wastewaters in this paper.
30778562	13	78	part_of	PAL	1865:1867	arg1	the PAL composites	PAL		the PAL composites		OGER	Site	PAL	Q9P2V4	composites	In conclusion, the broilers given the basal diet supplemented with the PAL composites exhibited similar growth performance to their counterparts in the AGP group.
30196422	8	66	gly	glycoproteins	1605:1617	arg1	model glycoproteins	model glycoproteins				Fterm		glycoproteins			Moreover, CNPs@Fe3O4 NCs was also effectively employed to desalt samples directly on MALDI plate, thus enabling direct MALDI-MS analysis of unpurified permethylated glycans derived from both model glycoproteins and biological samples.
30196422	8	67	gly	derived	1581:1587	arg1	model glycoproteins AND unpurified permethylated glycans	model glycoproteins			unpurified permethylated glycans	Fterm		glycoproteins			Moreover, CNPs@Fe3O4 NCs was also effectively employed to desalt samples directly on MALDI plate, thus enabling direct MALDI-MS analysis of unpurified permethylated glycans derived from both model glycoproteins and biological samples.
29315387	2	9	gly	glycosites	532:541	arg2	distinct glycosites			distinct glycosites						glycosites	The glycome is vast, and despite advancements in analytic strategies it continues to be difficult to decipher biological roles of glycans with respect to specific glycan structures, type of glycoconjugate, particular glycoproteins, and distinct glycosites on proteins.
29315387	2	27	gly	glycoproteins	504:516	arg1	particular glycoproteins	particular glycoproteins				Fterm		glycoproteins			The glycome is vast, and despite advancements in analytic strategies it continues to be difficult to decipher biological roles of glycans with respect to specific glycan structures, type of glycoconjugate, particular glycoproteins, and distinct glycosites on proteins.
30591361	2	27	part_of	β-CD/CNF	419:426	arg1	the β-CD/CNF composite	-CD		the β-CD/CNF composite		PUBTATOR	Site	-CD	65057	composite	The elemental composition and surface morphology of the β-CD/CNF composite was validated through Field emission scanning electron microscopy, energy dispersive X-ray microscopy, Fourier transform infrared spectroscopy, X-ray photoelectron spectroscopy, and thermogravimetric analysis.
29441088	7	60	gly	had	1709:1711	arg1	the protein AND a substantially lower Man9 composition	the protein			a substantially lower Man9 composition	Fterm		protein			However, the gp120 produced under kifunensine-treatment conditions showed Man9 being the most prominent glycoform (64.5%), while the protein produced without kifunensine had a substantially lower Man9 composition (20.3%).
29853074	5	38	part_of	CaP/CS	867:872	arg1	the mesoporous CaP/CS composite	CaP		the mesoporous CaP/CS composite		OGER	Site	CaP		composite	Cell adhesion and osteogenic properties of the mesoporous CaP/CS composite were evaluated by SEM and ALPase assay, respectively.
29561781	6	11	gly	N-glycoproteins	904:918	arg1	secreted N-glycoproteins	secreted N-glycoproteins				Fterm		N-glycoproteins			In this study, we used lectin affinity chromatography (LAC) coupled with mass spectrometry to characterize the secretome including secreted N-glycoproteins of Penium margaritaceum, which is a member of the CGA.
30184795	8	30	part_of	GA-HAP	1437:1442	arg1	GA-HAP nanocomposite	HAP		GA-HAP nanocomposite		OGER	Site	HAP	O95197	nanocomposite	The peaks at binding energies 286.5 and 289.3 eV of C 1S and the peaks at 530.6 eV and 532.1 eV of the O 1S spectra further substantiate encapsulation of GA over the HAP particles, resulting in the formation of GA-HAP nanocomposite.
30405163	1	48	gly	used	181:184	arg2	tough nano-composites			tough nano-composites						nano-composites	Cellulose nanocrystals (CNC) have been widely used as responsive materials, chiral templates, and tough nano-composites due to its unparalleled properties.
30840861	4	2	part_of	HA	774:775	arg1	HA:HNTs cryogel composites	HA:HNTs		HA:HNTs cryogel composites		OGER	Site	HA:HNTs	P20068	composites	Remarkably, HA:HNTs cryogel composites were found to be excellent scaffold materials in the proliferation of rat mesenchymal stem cells (MSC), human cervical carcinoma cells (HeLa), and human colon cancer cells (HCT116).
30840861	4	12	part_of	HNTs	777:780	arg1	HA:HNTs cryogel composites	HA:HNTs		HA:HNTs cryogel composites		OGER	Site	HA:HNTs	P20068	composites	Remarkably, HA:HNTs cryogel composites were found to be excellent scaffold materials in the proliferation of rat mesenchymal stem cells (MSC), human cervical carcinoma cells (HeLa), and human colon cancer cells (HCT116).