######phase = 0 #####file = edg-parse-error-gly ####Fix CC as copular head#### RuleID : CC_cop_head#### Cond_0 : {pos:/CC/}=N0 Cond_1 : {}=N0 >dep {pos:/JJ/}=N1 Cond_2 : {}=N0 >cop {}=N2 Cond_3 : {}=N0 >nsubj {}=N3 Action_1 : N1 >> nsubj >> N3 Action_2 : N1 >> cop >> N2 ####Fix dep to Appos#### RuleID : dep_appos_1 Cond_0 : {pos:NNS}=N0 Cond_1 : {pos:/(CD|NN|NNP)/;word:/.*[a-zA-Z]+.*/}=N1 Cond_2 : {pos:/(CD|NN|NNP)/;word:/.*[a-zA-Z]+.*/}=N2 Cond_3 : {}=N0 >dep {}=N1 Cond_4 : {}=N1 >/conj:(and|or)/ {}=N2 Action_1 : N0 >> appos_added >> N1 Action_2 : N0 >> appos_added >> N2 ####Fix dep to Appos with rel clause in between#### RuleID : dep_appos_2 Cond_0 : {pos:/(NN|NNS)/}=N0 >/acl/ {pos:VBN}=N1 Cond_3 : {}=N1 >dep {}=N2 Action_1 : N0 >> appos_added >> N2 ####Fix weird case to nmod:at#### RuleID : fix_nmod_at Cond_0 : {pos:/(NN|NNS)/}=N0 >/compound/ {word:at}=N1 Cond_3 : {}=N0 >compound {pos:/(NN|NNS)/}=N2 Action_1 : N2 >> nmod:at >> N0 ####Conjunction propagation error fixes ###Propagate edges skipping all_of RuleID : prop_all_of_1 Cond_1 : {word:/all|number|variety/}=N0 >/nmod:of/ {pos:/NN.*/}=N1 Cond_2 : {}=N2 >R1 {}=N0 Action_1 : N2 >> R1_skipped >> N1 ###Propagate conj mark edges RuleID : prop_mark_conj_1 Cond_1 : {}=N0 >/conj:and|conj:or/ {}=N1 Cond_2 : {}=N0 >mark {word:/to|by|in/}=N2 Action_1 : N1 >> mark >> N2 ###Propagate nmod edges for conj from first RuleID : prop_dobj_conj_1 Cond_1 : {pos:/NN.*/}=N0 >/conj:and|conj:or/ {pos:/NN.*/}=N1 Cond_2 : {}=N1 >/nmod:.*/=R1 {}=N2 Cond_3 : {}=N0 !>R1 {} Action_1 : N0 >> R1 >> N2 ###Propagate nmod edges for conj from second RuleID : prop_dobj_conj_1 Cond_1 : {pos:/NN.*/}=N0 >/conj:and|conj:or/ {pos:/NN.*/}=N1 Cond_2 : {}=N0 >/nmod:.*/=R1 {}=N2 Cond_3 : {}=N1 !>R1 {} Action_1 : N1 >> R1 >> N2 ###Propagate dobj edges for conj RuleID : prop_dobj_conj_1 Cond_1 : {pos:/VB.*/}=N0 >/conj:and|conj:or/ {pos:/VB.*/}=N1 Cond_2 : {}=N1 >dobj {}=N2 Cond_3 : {}=N0 !>dobj {} Action_1 : N0 >> dobj >> N2 ####propagate nsubj edge for dep to JJ RuleID : prop_nsubj_dep_JJ_1 Cond_1 : {pos:/JJ/}=N1 >/dep/ {}=N0 Cond_2 : {}=N1 >nsubj {}=N2 Cond_3 : {}=N1 >cop {}=N3 Action_1 : N0 >> nsubj >> N2 Action_2 : N0 >> cop >> N3 ####propagate nsubjpass edge for dep to VBN RuleID : prop_nsubj_dep_JJ_1 Cond_1 : {pos:/VBN/}=N1 >/dep/ {}=N0 Cond_2 : {}=N1 >nsubjpass {}=N2 Action_1 : N0 >> nsubjpass >> N2 #####file = edg-ofin ####of_in #### RuleID : of_in_1 Cond_1 : {pos:/(NN|NNS)/}=N0 Cond_2 : {}=N0 >/(nmod:of)/ {}=N1 Cond_3 : {}=N0 >/(nmod:in|nmod:at|nmod:on|nmod:from)/ {}=N2 Action_1 : N1 >> nmod:ofinsame >> N2 ####in_at #### RuleID : in_at_1 Cond_1 : {pos:/(NN|NNS)/}=N0 Cond_2 : {}=N0 >/(nmod:in)/ {}=N1 Cond_3 : {}=N0 >/(nmod:at|nmod:on|nmod:from)/ {}=N2 Action_1 : N1 >> nmod:inatsame >> N2 ####of_in #### RuleID : of_in_1 Cond_1 : {pos:/(NN|NNS)/}=N0 Cond_2 : {}=N0 >/(nmod:of)/ {}=N1 Cond_3 : {}=N1 >/(nmod:in|nmod:at|nmod:on|nmod:from)/ {}=N2 Action_1 : N0 >> nmod:ofindiff >> N2 ####in_at #### RuleID : in_at_1 Cond_1 : {pos:/(NN|NNS)/}=N0 Cond_2 : {}=N0 >/(nmod:in)/ {}=N1 Cond_3 : {}=N1 >/(nmod:at|nmod:on|nmod:from)/ {}=N2 Action_1 : N0 >> nmod:inatdiff >> N2 #####phase = 1 #####file = edg_group_of #### variety of Y#### RuleID : group_of_1 Cond_0 : {lemma:/(group|groups|variety|varieties|set|sets|lot|lots|amount|amounts|repertoire|repertoires)/}=N0 Cond_1 : {}=N0 >/nmod:of/ {}=N1 Action_1 : N0 >> group_of >> N1 #### quantifier_of_1#### RuleID : quantifier_of_1 Cond_0 : {lemma:/(all|All|both|Both|some|Some|many|Many|most|Most|each|Each)/}=N0 Cond_1 : {}=N0 >/nmod:of/ {}=N1 Action_1 : N0 >> quantifier_of >> N1 #### quantifier_of_2#### RuleID : quantifier_of_2 Cond_0 : {pos:/(CD)/}=N0 Cond_1 : {}=N0 >/nmod:of/ {}=N1 Action_1 : N0 >> quantifier_of >> N1 #### quantifier_of_3#### RuleID : quantifier_of_2 Cond_0 : {word:/(%)/}=N0 Cond_1 : {}=N0 >/nmod:of/ {}=N1 Action_1 : N0 >> quantifier_of >> N1 #####file = part_whole #### part-whole #### RuleID : part-whole_1 Cond_0 : {lemma:/(.*lobe|.*domain|.*site|.*arm|.*residue|.*monomer)/}=N0 Cond_1 : {}=N0 >/nmod:of/ {}=N1 Action_1 : N0 >> part_whole >> N1 #####file = is_a_gly-wo-arg ####X was expressed as a Y#### RuleID : isa_expressed_as_1 Cond_0 : {lemma:/(express)/}=N0 Cond_1 : {}=N0 >nsubjpass {}=N1 Cond_2 : {}=N0 >/nmod:as/ {}=N2 Action_1 : N1 >> is_a >> N2 #### expressed X as a Y#### RuleID : isa_expressed_as_1 Cond_0 : {lemma:/(express)/}=N0 Cond_1 : {}=N0 >dobj {}=N1 Cond_2 : {}=N0 >/nmod:as/ {}=N2 Action_1 : N1 >> is_a >> N2 ####X was detected/synthesized as a Y#### RuleID : isa_nsubjpass_as_1 Cond_0 : {pos:/(VBN)/}=N0 Cond_1 : {}=N0 >nsubjpass {}=N1 Cond_2 : {}=N0 >/nmod:as/ {}=N2 Action_1 : N1 >> is_a >> N2 ####Copular Rule:X is a Y#### RuleID : isa_cop_1 Cond_0 : {}=N0 >nsubj {}=N1 Cond_1 : {}=N0 >cop {}=N2 Cond_2 : {}=N0 >det {lemma:/(a|an|the)/}=N3 Cond_3 : {}=N0 !> /case/ {tag:IN} Action_1 : N1 >> is_a >> N0 RuleID : isa_cop_1a Cond_0 : {}=N0 >nsubj {}=N1 Cond_1 : {}=N0 >cop {}=N2 Cond_2 : {}=N1 >det {lemma:/(a|an|the)/}=N3 Cond_3 : {}=N0 !> /case/ {tag:IN} Action_1 : N0 >> is_a >> N1 ####Copular Rule:X are Y#### RuleID : isa_2 Cond_0 : {pos:/NN|NNS/}=N0 >nsubj {}=N1 Cond_1 : {}=N0 >cop {word:are}=N2 Cond_2 : {}=N0 !> /case/ {tag:IN} Action_1 : N1 >> is_a >> N0 ####Appos Rule#### RuleID : isa_2 Cond_0 : {}=N0 >/(appos|appos_added)/ {}=N1 Action_1 : N0 >> is_a >> N1 ####X act|serve as a Y#### RuleID : isa_serves_as_1 Cond_0 : {tag:/VB.*/;lemma:/(serve|act|function|known)/}=N0 Cond_1 : {}=N0 >nsubj {}=N1 Cond_2 : {}=N0 >/nmod:as/ {}=N2 Cond_3 : {}=N2 >det {lemma:/(a|an|the)/}=N3 Action_1 : N1 >> is_a >> N2 ####NP VB X as a Y#### RuleID : isa_dobj_as_2 Cond_0 : {tag:/VB.*/}=N0 Cond_1 : {}=N0 >dobj {}=N1 Cond_2 : {}=N0 >/nmod:as/ {}=N2 Cond_3 : {}=N2 >det {lemma:/(a|an|the)/}=N3 Action_1 : N1 >> is_a >> N2 ####X act|serve as Y_NNS#### RuleID : isa_serves_as_1_1 Cond_0 : {tag:/VB.*/;lemma:/(serve|act|function|known)/}=N0 Cond_1 : {}=N0 >nsubj {}=N1 Cond_2 : {}=N0 >/nmod:as/ {tag:NNS}=N2 Action_1 : N1 >> is_a >> N2 ####NP VB X as Y_NNS#### RuleID : isa_dobj_as_2_1 Cond_0 : {tag:/VB.*/}=N0 Cond_1 : {}=N0 >dobj {}=N1 Cond_2 : {}=N0 >/nmod:as/ {tag:NNS}=N2 Action_1 : N1 >> is_a >> N2 ########X encoding Y######## RuleID : is_a_encoding_1 Cond_0 : {tag:/VB.*/;lemma:/encode/}=N0 Cond_1 : {}=N0 >/(nsubj|nsubj_null)/ {}=N1 Cond_2 : {}=N0 >dobj {}=N2 Action_1 : N1 >> is_a >> N2 #####file = member_collection RuleID : memberCollection_1 Cond_1 : {tag:NNS}=N0 >/(nmod:such_as|nmod:including)/ {}=N1 Action_1 : N0 >> member_collection >> N1 RuleID : memberCollection_collective_1 Cond_1 : {tag:NN;lemma:/(range|number|variety)/}=N0 >/(nmod:such_as|nmod:including)/ {}=N1 Action_1 : N0 >> member_collection >> N1 RuleID : memberCollection_2 Cond_1 : {lemma:/(range|number|variety)/}=N0 Cond_2 : {}=N0 >/nmod:of/ {tag:NNS}=N1 Cond_1 : {}=N1 >/(nmod:such_as|nmod:including)/ {}=N2 Action_1 : N0 >> member_collection >> N2 ######phase = 2 #####file = glyed ################# trigger as JJ/noun modifier ####glycosylated protein#### RuleID : glycosylated_amod_1 Cond_1 : {word:/(.*glycosylated)/}=N0 Cond_2 : {tag:/(NN|NNS)/}=N1 >/amod/ {}=N0 Action_1 : N0 >> arg1_gly >> N1 ####protein o-glycosylated red rel#### RuleID : glycosylated_red_rel_1 Cond_1 : {pos:/JJ/;word:/(.*glycosylated)/}=N0 Cond_2 : {pos:/(NN|NNS)/}=N1 >/amod/ {}=N0 Action_1 : N0 >> arg1_gly >> N1 ####glyosylated form#### RuleID : glycosylated_form_1 Cond_1 : {word:/(.*glycosylated)/}=N0 Cond_2 : {word:/(.*form|.*forms)/}=N1 >/amod/ {}=N0 Cond_3 : {}=N1 >/nmod:of/ {tag:/(NN|NNS)/}=N2 Action_1 : N0 >> arg1_gly >> N2 ####protein o-glycosylated red rel#### #####RuleID : glycosylated_red_rel_1 #####Cond_1 : {pos:/JJ/;word:/(.*glycosylated)/}=N0 #####Cond_2 : {pos:/(NN|NNS)/}=N1 >/amod/ {}=N0 #####Action_1 : N0 >> arg1_gly >> N1 ################# passive ####protein was glycosylated #### RuleID : glycosylated_passive_1 Cond_1 : {pos:/VBN/;word:/(.*glycosylated)/}=N0 Cond_2 : {}=N0 >/nsubjpass/ {}=N1 Action_1 : N0 >> arg1_gly >> N1 ####protein was glycosylated #### RuleID : glycosylated_copular_1 Cond_1 : {word:/(.*glycosylated)/}=N0 Cond_2 : {}=N0 >/nsubj/ {}=N1 Cond_3 : {}=N0 >/cop/ {}=N2 Action_1 : N0 >> arg1_gly >> N1 ####protein glycosylated at red rel#### RuleID : glycosylated_red_rel_2 Cond_1 : {word:/(.*glycosylated)/}=N0 Cond_2 : {pos:/(NN|NNS)/}=N1 >/(acl|dep)/ {}=N0 Action_1 : N0 >> arg1_gly >> N1 ####protein was glycosylated at site_1#### RuleID : glycosylated_passive_1 Cond_1 : {pos:/VBN/;word:/(.*glycosylated)/}=N0 Cond_2 : {}=N0 >/nmod:at/ {}=N1 Action_1 : N0 >> arg2_gly >> N1 ####protein was glycosylated at site_2#### RuleID : glycosylated_copular_1 Cond_1 : {pos:/JJ/;word:/(.*glycosylated)/}=N0 Cond_2 : {}=N0 >/nmod:at/ {}=N1 Action_1 : N0 >> arg2_gly >> N1 ####protein was glycosylated on site_1#### RuleID : glycosylated_passive_1 Cond_1 : {pos:/VBN/;word:/(.*glycosylated)/}=N0 Cond_2 : {}=N0 >/nmod:on/ {}=N1 Action_1 : N0 >> arg2_gly >> N1 ####protein was glycosylated on site_2#### RuleID : glycosylated_copular_1 Cond_1 : {pos:/JJ/;word:/(.*glycosylated)/}=N0 Cond_2 : {}=N0 >/nmod:on/ {}=N1 Action_1 : N0 >> arg2_gly >> N1 ####protein was glycosylated at site_2#### RuleID : glycosylated_copular_1 Cond_1 : {pos:/VBN/;word:/(.*glycosylated)/}=N0 Cond_2 : {}=N0 >/nmod:on/ {}=N1 Action_1 : N0 >> arg2_gly >> N1 ####site was glycosylatedVBN in protein#### RuleID : glycosylated_copular_1 Cond_1 : {pos:/VBN/;word:/(.*glycosylated)/}=N0 Cond_2 : {}=N0 >/nmod:(on|in)/ {}=N1 Cond_3 : {}=N0 >/nsubjpass/ {}=N2 Action_1 : N0 >> arg1_gly >> N1 Action_1 : N0 >> arg2_gly >> N2 ####site was glycosylatedJJ in protein#### RuleID : glycosylated_copular_1 Cond_1 : {word:/(.*glycosylated)/}=N0 Cond_2 : {}=N0 >/nmod:(on|in)/ {}=N1 Cond_3 : {}=N0 >/nsubj/ {}=N2 Cond_4 : {}=N0 >/cop/ {}=N3 Action_1 : N0 >> arg1_gly >> N1 Action_1 : N0 >> arg2_gly >> N2 ################# active ####something glycosylated protein #### RuleID : glycosylated_VBD Cond_1 : {pos:/VBD/;word:/(.*glycosylated)/}=N0 Cond_2 : {}=N0 >/dobj/ {}=N1 Action_1 : N0 >> arg1_gly >> N1 ####something glycosylates protein #### RuleID : glycosylates_VBZ Cond_1 : {pos:/VBZ/;word:/(.*glycosylates)/}=N0 Cond_2 : {}=N0 >/dobj/ {}=N1 Action_1 : N0 >> arg1_gly >> N1 ####something was found to glycosylate protein #### RuleID : glycosylate_VB Cond_1 : {pos:/VB/;word:/(.*glycosylate)/}=N0 Cond_2 : {}=N0 >/dobj/ {}=N1 Action_1 : N0 >> arg1_gly >> N1 #### could we have glycosylated protein rule where there is compound and not amod? ######file = glytion ##### glcnacylation, mannosylation, sialylation ####effect/influence/role of glycosylation (no of) on/on/in VBG function of X DONE #### ####effect/role of glycosylation (no of) on/in function of X DONE #### #### glycosylation contributes to function of X DONE ####via/through glycosylation of X#### ####X does something via/through glycosylation of X#### ####something was done to X function via/through glycosylation of X#### ####something was done to function of X via/through glycosylation of X#### ####glycosylation (no of X but ok of site) is critical for X function#### ####glycosylation is critical for function of X#### #### glycosylation state/profile/status/pattern of X DONE ### #### glycosylation occurs at site DONE #### X with glycosylation DONE #### glycosylation influences/contributes ... #####role ####role of glycosylation in of #### RuleID : role_glycosylation_in_of Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {lemma:/role/} = N1 >/nmod:of/ {}=N0 Cond_3 : {}=N1 >/(nmod:in)/ {}=N2 Cond_4 : {}=N2 >/nmod:of/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####role of glycosylation in compound#### RuleID : role_glycosylation_in_compound Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {lemma:/role/} = N1 >/nmod:of/ {}=N0 Cond_3 : {}=N1 >/(nmod:in)/ {}=N2 Cond_4 : {}=N2 >/compound/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####role of glycosylation VBG of #### RuleID : role_glycosylation_VBG_of_1 Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {lemma:/role/} = N1 >/nmod:of/ {}=N0 Cond_3 : {}=N1 >/(acl)/ {pos:/VBG/}=N2 Cond_4 : {}=N2 >/dobj/ {}=N3 Cond_5 : {}=N3 >/nmod:of/ {}=N4 Action_1 : N0 >> arg1_gly >> N4 ####role of glycosylation VBG comp #### RuleID : role_glycosylation_in_compound Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {lemma:/role/} = N1 >/nmod:of/ {}=N0 Cond_3 : {}=N1 >/(acl)/ {pos:/VBG/}=N2 Cond_4 : {}=N2 >/dobj/ {}=N3 Cond_5 : {}=N3 >/compound/ {}=N4 Action_1 : N0 >> arg1_gly >> N4 ####effect of glycosylation 1 #### RuleID : role_glycosylation_on_of Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {lemma:/(effect|influence)/} = N1 >/nmod:of/ {}=N0 Cond_3 : {}=N1 >/(nmod:on)/ {}=N2 Cond_4 : {}=N2 >/nmod:of/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####effect of glycosylation 2 #### RuleID : effect glycosylation_on_compound Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {lemma:/(effect|influence)/} = N1 >/nmod:of/ {}=N0 Cond_3 : {}=N1 >/(nmod:on)/ {}=N2 Cond_4 : {}=N2 >/compound/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####glycosylation contributes to of #### RuleID : glycosylation_contribute_to_of Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {lemma:/contribute/} = N1 >/nsubj/ {}=N0 Cond_3 : {}=N1 >/(nmod:to)/ {}=N2 Cond_4 : {}=N2 >/nmod:of/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####glycosylation contribute to comp #### RuleID : glycosylation_contributes to_compound Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {lemma:/contribute/} = N1 >/nsubj/ {}=N0 Cond_3 : {}=N1 >/(nmod:to)/ {}=N2 Cond_4 : {}=N2 >/compound/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####glycosylation_crtical_for_of#### RuleID : glycosylation_required_for_of Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {word:/(essential|critical|important)/} = N1 >/nsubj/ {}=N0 Cond_3 : {}=N1 >/(nmod:for)/ {}=N2 Cond_4 : {}=N2 >/nmod:of/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####glycosylation_critical_for_of#### RuleID : glycosylation_required_for_of Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {word:/(essential|critical|important)/} = N1 >/nsubj/ {}=N0 Cond_3 : {}=N1 >/(nmod:for)/ {}=N2 Cond_4 : {}=N2 >/compound/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####glycosylation_required_for_of#### RuleID : glycosylation_required_for_of Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {word:/(required)/} = N1 >/nsubjpass/ {}=N0 Cond_3 : {}=N1 >/(nmod:for)/ {}=N2 Cond_4 : {}=N2 >/nmod:of/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####glycosylation_required_for_of#### RuleID : glycosylation_required_for_of Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {word:/(required)/} = N1 >/nsubjpass/ {}=N0 Cond_3 : {}=N1 >/(nmod:for)/ {}=N2 Cond_4 : {}=N2 >/compound/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####glycosylation_affects_of#### RuleID : glycosylation_required_for_of Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {lemma:/(affect)/} = N1 >/nsubj/ {}=N0 Cond_3 : {}=N1 >/(dobj)/ {}=N2 Cond_4 : {}=N2 >/nmod:of/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####glycosylation_affects_of#### RuleID : glycosylation_required_for_of Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {lemma:/(affect)/} = N1 >/nsubj/ {}=N0 Cond_3 : {}=N1 >/(dobj)/ {}=N2 Cond_4 : {}=N2 >/compound/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####Xs PTM#### RuleID : ptm_its_1 Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {}=N0 >/nmod:poss/ {}=N1 Action_1 : N0 >> arg0_ptm >> N1 ####detect glycosylation in#### RuleID : detected_glycosylation_in_1 Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {pos:/(VB.*)/}=N1 >/dobj/ {}=N0 Cond_3 : {}=N1 >/(nmod:in|nmod:at|nmod:on)/ {}=N2 Action_1 : N0 >> arg1_gly >> N2 ####glycosylation was detected in#### RuleID : glycosylation_was_detected_in_1 Cond_1 : {lemma:/(.*glycosylation)/}=N0 Cond_2 : {pos:/(VB.*)/}=N1 >/nsubjpass/ {}=N0 Cond_3 : {}=N1 >/(nmod:in|nmod:at|nmod:on)/ {}=N2 Action_1 : N0 >> arg1_gly >> N2 ####glycosylation in#### RuleID : glycosylation_in_1 Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {}=N0 >/(nmod:in|nmod:at|nmod:on)/ {}=N1 Action_1 : N0 >> arg1_gly >> N1 ####undergo glycosylation #### RuleID : undergo_glycosylation_1 Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {lemma:/undergo|underwent/}=N1 >/(dobj)/ {}=N0 Cond_3 : {}=N1 >nsubj {}=N2 Action_1 : N0 >> arg1_gly >> N2 #### with glycosylation #### RuleID : with glycosylation_1 Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {pos:/NN.*/} = N1 >/nmod:with/ {}=N0 Action_1 : N0 >> arg1_gly >> N1 ####glycosylation pattern of #### RuleID : glycosylation_pattern_of_1 Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {lemma:/pattern|profile|state|status|analysis/} = N1 >/compound/ {}=N0 Cond_3 : {}=N1 >/(nmod:of)/ {}=N2 Action_1 : N0 >> arg1_gly >> N2 ####glycosylation pattern at #### RuleID : glycosylation_pattern_at_1 Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {lemma:/pattern|profile|state|status/} = N1 >/compound/ {}=N0 Cond_3 : {}=N1 >/(nmod:at)/ {}=N2 Action_1 : N0 >> arg2_gly >> N2 ####glycosylation pattern of #### RuleID : glycosylation_pattern_of_1 Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {word:/.*ogeneity/} = N1 >/compound/ {}=N0 Cond_3 : {}=N1 >/(nmod:of)/ {}=N2 Action_1 : N0 >> arg1_gly >> N2 ####glycosylation heterogeneity at #### RuleID : glycosylation_pattern_at_1 Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {word:/.*ogeneity/} = N1 >/compound/ {}=N0 Cond_3 : {}=N1 >/(nmod:at|nmod:in|nmod:on)/ {}=N2 Action_1 : N0 >> arg2_gly >> N2 ####glycosylation pattern of #### RuleID : glycosylation_pattern_of_1 Cond_1 : {word:/(carbohydrate)/}=N0 Cond_2 : {lemma:/pattern|profile|state|status|analysis/} = N1 >/compound/ {}=N0 Cond_3 : {}=N1 >/(nmod:of)/ {}=N2 Action_1 : N0 >> arg1_gly >> N2 ####glycosylation pattern at #### RuleID : glycosylation_pattern_at_1 Cond_1 : {word:/(carbohydrate)/}=N0 Cond_2 : {lemma:/pattern|profile|state|status/} = N1 >/compound/ {}=N0 Cond_3 : {}=N1 >/(nmod:at)/ {}=N2 Action_1 : N0 >> arg2_gly >> N2 ####glycosylation of #### RuleID : glycosylation_of_1 Cond_1 : {lemma:/(.*glycosylation)/}=N0 Cond_2 : {}=N0 >/(nmod:of)/ {}=N1 Action_1 : N0 >> arg1_gly >> N1 ####site of glycosylation_1 #### RuleID : glycosylation_sites Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {lemma:/site/}=N1 >/(nmod:of)/ {}=N0 Action_1 : N0 >> arg2_gly >> N1 ####site of glycosylation_in #### RuleID : site of glycosylation in Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {lemma:/site/}=N1 >/(nmod:of)/ {}=N0 Cond_3 : {}=N1 >/(nmod:in)/ {}=N2 Action_1 : N0 >> arg1_gly >> N2 ####site glycosylation_1 #### RuleID : glycosylation_sites Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {lemma:/site/}=N1 >/(compound)/ {}=N0 Action_1 : N0 >> arg2_gly >> N1 ####site glycosylation_site_at_1 #### RuleID : glycosylation_sites_at Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {lemma:/site/}=N1 >/(compound)/ {}=N0 Cond_3 : {}=N1 >/(nmod:at|nmod:inatdiff|nmod:ofindiff)/ {}=N2 Action_1 : N0 >> arg2_gly >> N2 ####site glycosylation_1a #### RuleID : glycosylation_sites Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {lemma:/site/}=N1 >/(amod)/ {}=N0 Action_1 : N0 >> arg2_gly >> N1 ####site glycosylation_site_at_1a #### RuleID : glycosylation_sites_at Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {lemma:/site/}=N1 >/(amod)/ {}=N0 Cond_3 : {}=N1 >/(nmod:at|nmod:inatdiff|nmod:ofindiff)/ {}=N2 Action_1 : N0 >> arg2_gly >> N2 ####site glycosylation_site_of_1b #### RuleID : glycosylation_sites_at Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {lemma:/site/}=N1 >/(compound)/ {}=N0 Cond_3 : {}=N1 >/(nmod:of)/ {}=N2 Action_1 : N0 >> arg1_gly >> N2 ####site glycosylation_site_of_1c #### RuleID : glycosylation_sites Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {lemma:/site/}=N1 >/(amod)/ {}=N0 Cond_3 : {}=N1 >/(nmod:of)/ {}=N2 Action_1 : N0 >> arg1_gly >> N2 ####site glycosylation_2#### RuleID : glycosylation_sites real site Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {}=N2 >/(compound)/ {}=N0 Cond_3 : {}=N2 >/(compound)/ {lemma:/site/}=N1 Action_1 : N0 >> arg2_gly >> N1 Action_12 : N0 >> arg2_gly >> N2 ####site glycosylation_2a#### RuleID : glycosylation_sites real site as CD Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {lemma:/site/}=N1 >/(compound)/ {}=N0 Cond_3 : {}=N1 >/(nummod)/ {}=N2 Action_1 : N0 >> arg2_gly >> N1 Action_12 : N0 >> arg2_gly >> N2 ####site glycosylation_2b#### RuleID : glycosylation_as JJ sites real site as CD Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {lemma:/site/}=N1 >/(amod)/ {}=N0 Cond_3 : {}=N1 >/(nummod)/ {}=N2 Action_1 : N0 >> arg2_gly >> N1 Action_12 : N0 >> arg2_gly >> N2 ####sequon glycosylation_1 #### RuleID : glycosylation_sites Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {lemma:/sequon/}=N1 >/(compound)/ {}=N0 Action_1 : N0 >> arg2_gly >> N1 ####motif glycosylation_1 #### RuleID : glycosylation_sites Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {lemma:/motif/}=N1 >/(compound)/ {}=N0 Action_1 : N0 >> arg2_gly >> N1 ####sequon glycosylation_1a #### RuleID : glycosylation_sites Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {lemma:/sequon/}=N1 >/(amod)/ {}=N0 Action_1 : N0 >> arg2_gly >> N1 ####motif glycosylation_1a #### RuleID : glycosylation_sites Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {lemma:/motif/}=N1 >/(amod)/ {}=N0 Action_1 : N0 >> arg2_gly >> N1 ####glycosylation_occurs_at### RuleID : glycosylation_occurs_at Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {lemma:/occur/}=N1 >/nsubj/ {}=N0 Cond_3 : {}=N1 >/(nmod:in|nmod:on|nmod:at)/ {}=N2 Action_1 : N0 >> arg2_gly >> N2 ####glycosylation_found in prot### RuleID : glycosylation_found_in Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {word:/(found|located)/}=N1 >/nsubjpass/ {}=N0 Cond_3 : {}=N1 >/(nmod:in|)/ {}=N2 Action_1 : N0 >> arg1_gly >> N2 ####glycosylation_found at site### RuleID : glycosylation_found_at Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {word:/(found|located)/}=N1 >/nsubjpass/ {}=N0 Cond_3 : {}=N1 >/(nmod:on|nmod:at)/ {}=N2 Action_1 : N0 >> arg2_gly >> N2 ####site glycosylation_1 #### RuleID : glycosylation_sites Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {lemma:/site/}=N1 >/(compound)/ {}=N0 Cond_3 : {word:/(located|found)/}=N2 >/(nsubj|nsubjpass)/ {}=N1 Cond_4 : {}=N2 >/(nmod:on|nmod:at)/ {}=N3 Action_1 : N0 >> arg2_gly >> N3 ####site glycosylation_1a #### RuleID : glycosylation_sites Cond_1 : {word:/(.*glycosylation)/}=N0 Cond_2 : {lemma:/site/}=N1 >/(amod)/ {}=N0 Cond_3 : {word:/(located|found)/}=N2 >/(nsubj|nsubjpass)/ {}=N1 Cond_4 : {}=N2 >/(nmod:on|nmod:at)/ {}=N3 Action_1 : N0 >> arg2_gly >> N3 ####glycosylation at #### RuleID : glycosylation_at_1 Cond_1 : {lemma:/(.*glycosylation)/}=N0 Cond_2 : {}=N0 >/(nmod:at)/ {}=N1 Action_1 : N0 >> arg2_gly >> N1 ####o-glycosylations_JJ at #### RuleID : glycosylation_of_1 Cond_1 : {word:/(.*glycosylations)/}=N0 Cond_2 : {}=N1 >/(amod)/ {}=N0 Action_1 : N0 >> arg2_gly >> N1 #####file = modification ####role of modification 1 #### RuleID : role_modification_in_compound Cond_1 : {word:/(modification)/}=N0 Cond_2 : {lemma:/role/} = N1 >/nmod:of/ {}=N0 Cond_3 : {}=N1 >/(nmod:in)/ {}=N2 Cond_4 : {}=N2 >/compound/ {}=N3 Action_1 : N0 >> arg1_mod >> N3 ####role of modification 2 #### RuleID : role_modification_in_compound Cond_1 : {word:/(modification)/}=N0 Cond_2 : {lemma:/role/} = N1 >/nmod:of/ {}=N0 Cond_3 : {}=N1 >/(nmod:in)/ {}=N2 Cond_4 : {}=N2 >/compound/ {}=N3 Cond_5 : {}=N0 >/compound/ {}=N1 Action_1 : N0 >> arg1_mod >> N3 Action_2 : N0 >> arg3_mod >> N1 ####modification title 1 #### RuleID : role_modification_in_compound Cond_1 : {lemma:/(modification)/}=N0 Cond_2 : {}=N0 >/(nmod:of)/ {}=N2 Cond_3 : {}=N0 >/compound/ {}=N1 Action_1 : N0 >> arg1_mod >> N2 Action_2 : N0 >> arg3_mod >> N1 ####was modified with 1 #### RuleID : modified_with_1 Cond_1 : {word:/(modified)/}=N0 Cond_2 : {}=N0 >/(nmod:with)/ {}=N2 Cond_3 : {}=N0 >/nsubjpass/ {}=N1 Action_1 : N0 >> arg1_mod >> N1 Action_2 : N0 >> arg3_mod >> N2 ####was modified by 1 #### RuleID : modified_by_1 Cond_1 : {word:/(modified)/}=N0 Cond_2 : {}=N0 >/(nmod:agent)/ {}=N2 Cond_3 : {}=N0 >/nsubjpass/ {}=N1 Action_1 : N0 >> arg1_mod >> N1 Action_2 : N0 >> arg3_mod >> N2 ####file = other_trigger ####occupancy of site_1 #### RuleID : occupancy of_site_1 Cond_1 : {word:/(occupancy|occupancies)/}=N0 Cond_2 : {}=N0 >/nmod:of/ {}=N1 Action_1 : N0 >> arg2_gly >> N1 ####site occupancy of protein #### RuleID : occupancy of_site_1 Cond_1 : {word:/(occupation|occupancy|occupancies)/}=N0 Cond_2 : {}=N0 >/nmod:of/ {}=N1 Cond_3 : {}=N0 >/(compound)/ {word:/(site|sites)/}=N2 Action_1 : N0 >> arg2_gly >> N2 Action_2 : N0 >> arg1_gly >> N1 ####linked### ####prot is linked at site#### RuleID : linked_tmp Cond_1 : {word:/(.*linked|.*derived)/}=N0 Cond_2 : {}=N0 >/nsubj/ {}=N1 Cond_3 : {}=N0 >/advcl:at/ {}=N2 Action_1 : N0 >> arg1_attach >> N1 Action_1 : N0 >> arg2_attach >> N2 ####linked### ####prot-linked#### RuleID : linked_tmp Cond_1 : {word:/(.*linked|.*derived)/}=N0 Cond_2 : {}=N1 >/amod/ {}=N0 Action_1 : N0 >> arg1_link >> N1 ####linked### ####prot linked#### RuleID : linked_tmp Cond_1 : {word:/(.*linked|.*derived)/}=N0 Cond_2 : {}=N1 >/compound/ {}=N0 Action_1 : N0 >> arg1_link >> N1 ####attached to #### RuleID : attached_to_1 Cond_1 : {pos:/(VBN)/;lemma:/(attach|link)/}=N0 Cond_2 : {}=N0 >/nmod:to/ {}=N1 Cond_3 : {}=N0 >/(nsubjpass)/ {}=N2 Action_1 : N0 >> arg2_attach >> N2 Action_2 : N0 >> arg1_attach >> N1 ####attached to nsubj#### RuleID : attached_to_2 Cond_1 : {lemma:/(attach|link)/}=N0 Cond_2 : {}=N0 >/nmod:to/ {}=N1 Cond_3 : {}=N0 >/(nsubj)/ {}=N2 Action_1 : N0 >> arg2_attach >> N2 Action_2 : N0 >> arg1_attach >> N1 ####nsubj linked to site/protein#### RuleID : attached_to_2 Cond_1 : {word:/(.*linked)/}=N0 Cond_2 : {}=N0 >/nmod:to/ {}=N1 Cond_3 : {}=N0 >/(nsubj)/ {}=N2 Action_1 : N0 >> arg2_attach >> N2 Action_2 : N0 >> arg1_attach >> N1 ####linked at or via site#### RuleID : attached_to_2 Cond_1 : {word:/(.*linked)/}=N0 Cond_2 : {}=N0 >/(nmod:via|nmod:at|nmod:in|nmod:on)/ {}=N1 Action_1 : N0 >> arg3_attach >> N1 ####attached to reduced relative #### RuleID : sugar_attached_to_1_rel Cond_1 : {pos:/(VBN)/;lemma:/(attach|link)/}=N0 Cond_2 : {}=N0 >/nmod:to/ {}=N1 Cond_3 : {}=N2 >/acl/ {}=N0 Action_1 : N0 >> arg2_attach >> N2 Action_2 : N0 >> arg1_attach >> N1 ####attached at #### RuleID : attached_on_1 Cond_1 : {pos:/(VBN)/;lemma:/(attach|link)/}=N0 Cond_2 : {}=N0 >/(nmod:at|nmod:on|nmod:in)/ {}=N1 Cond_3 : {}=N0 >/nsubjpass/ {}=N2 Action_1 : N0 >> arg2_attach >> N2 Action_2 : N0 >> arg3_attach >> N1 ####attached at reduced relative #### RuleID : sugar_attached_on_1_redrel Cond_1 : {pos:/(VBN)/;lemma:/(attach|link)/}=N0 Cond_2 : {}=N0 >/(nmod:at|nmod:on|nmod:in)/ {}=N1 Cond_3 : {}=N2 >/acl/ {}=N0 Action_1 : N0 >> arg2_attach >> N2 Action_2 : N0 >> arg3_attach >> N1 ####attached at #### RuleID : attached_agent_1 Cond_1 : {pos:/(VBN)/;lemma:/(attach|link)/}=N0 Cond_2 : {}=N0 >/(nmod:agent)/ {}=N1 Cond_3 : {}=N0 >/nsubjpass/ {}=N2 Action_1 : N0 >> arg2_attach >> N2 Action_2 : N0 >> arg3_attach >> N1 ####attached at reduced relative #### RuleID : attached_agent_1_redrel Cond_1 : {pos:/(VBN)/;lemma:/(attach|link)/}=N0 Cond_2 : {}=N0 >/(nmod:agent)/ {}=N1 Cond_3 : {}=N2 >/acl/ {}=N0 Action_1 : N0 >> arg2_attach >> N2 Action_2 : N0 >> arg3_attach >> N1 ####attachment of sugar to prot #### RuleID : attachment_removal_site_1 Cond_1 : {word:/(attachment|removal|Attachment|Removal)/}=N0 Cond_2 : {} = N0 >/nmod:of/ {}=N1 Cond_3 : {}=N0 >/(nmod:to)/ {}=N2 Action_1 : N0 >> arg1_attach >> N2 Action_2 : N0 >> arg2_attach >> N1 ####attachment of sugar at site #### RuleID : attachment_removal_site_1 Cond_1 : {word:/(attachment|removal|Attachment|Removal)/}=N0 Cond_2 : {} = N0 >/nmod:of/ {}=N1 Cond_3 : {}=N0 >/(nmod:at|nmod:in|nmod:on)/ {}=N2 Action_1 : N0 >> arg3_attach >> N2 Action_2 : N0 >> arg2_attach >> N1 ####gds form linkage#### RuleID : form_linkage_1 Cond_1 : {lemma:/(form)/}=N1 Cond_2 : {}=N1 >/dobj/ {word:/(.*linkage|.*linkages)/}=N0 Cond_3 : {}=N1 >/nmod:with/ {}=N2 Cond_4 : {}=N1 >/nsubj/ {}=N3 Action_1 : N0 >> arg1_attach >> N3 Action_2 : N0 >> arg2_attach >> N2 ####form linkage with #### RuleID : form_linkage_2 Cond_1 : {lemma:/(form)/}=N1 Cond_2 : {}=N1 >/dobj/ {word:/(.*linkage|.*linkages)/}=N0 Cond_3 : {}=N0 >/nmod:with/ {}=N2 Cond_4 : {}=N1 >/nsubj/ {}=N3 Action_1 : N0 >> arg1_attach >> N3 Action_2 : N0 >> arg2_attach >> N2 ####missing VBD, to attach, VBZ ### ####isolated/removed from #### RuleID : isolated_from_1 Cond_1 : {lemma:/(isolate|remove|derive|liberate|release)/}=N0 Cond_2 : {}=N0 >/nmod:from/ {}=N1 Cond_3 : {}=N0 >/nsubjpass/ {}=N2 Action_1 : N0 >> arg2_attach >> N2 Action_2 : N0 >> arg1_attach >> N1 ####isolated/removed from reduced relative #### RuleID : sugar_isolated_from_1 Cond_1 : {lemma:/(isolate|remove|derive|liberate|release)/}=N0 Cond_2 : {}=N0 >/nmod:from/ {}=N1 Cond_3 : {}=N2 >/acl/ {}=N0 Action_1 : N0 >> arg2_attach >> N2 Action_2 : N0 >> arg1_attach >> N1 ####sugar_present_in_on_at_1 #### RuleID : present_in_on_1 Cond_1 : {lemma:/(present|predominant)/}=N0 Cond_2 : {}=N0 >/(nmod:in|nmod:on|nmod:at)/ {}=N1 Cond_3 : {}=N0 >/nsubj/ {}=N2 Action_1 : N0 >> arg2_attach >> N2 Action_2 : N0 >> arg1_attach >> N1 ####sugar_present_in_on_at_red rel #### RuleID : present_in_on_1 Cond_1 : {pos:/(JJ)/;lemma:/(present|predominant)/}=N0 Cond_2 : {}=N0 >/(nmod:in|nmod:on|nmod:at)/ {}=N1 Cond_3 : {}=N2 >/amod/ {}=N0 Action_1 : N0 >> arg2_attach >> N2 Action_2 : N0 >> arg1_attach >> N1 ####presence of sugar_in_on_at_1 #### RuleID : present_in_on_1 Cond_1 : {word:/(presence|predominance)/}=N0 Cond_2 : {}=N0 >/(nmod:in|nmod:on|nmod:at)/ {}=N1 Cond_3 : {}=N0 >/nmod:of/ {}=N2 Action_1 : N0 >> arg2_attach >> N2 Action_2 : N0 >> arg1_attach >> N1 ####sugar_found_for_1 #### RuleID : found_for_1 Cond_1 : {lemma:/(found)/}=N0 Cond_2 : {}=N0 >/(nmod:for)/ {}=N1 Cond_3 : {}=N0 >/nsubj/ {}=N2 Action_1 : N0 >> arg2_attach >> N2 Action_2 : N0 >> arg1_attach >> N1 ####sugar_found_for_red_rel1 #### RuleID : found_for_1 Cond_1 : {lemma:/(found)/}=N0 Cond_2 : {}=N0 >/(nmod:for)/ {}=N1 Cond_3 : {}=N2 >/acl/ {}=N0 Action_1 : N0 >> arg2_attach >> N2 Action_2 : N0 >> arg1_attach >> N1 ####simple contained #### RuleID : contained sugar_1 Cond_1 : {pos:/(VBZ|VBD|VB|VBP)/;lemma:/(contain)/}=N0 Cond_2 : {}=N0 >/nsubj/ {}=N1 Cond_3 : {}=N0 >/dobj/ {}=N2 Action_1 : N0 >> arg1_contain >> N1 Action_2 : N0 >> arg2_contain >> N2 ####contained_on #### RuleID : contained_on_1 Cond_1 : {pos:/(VBZ|VBD|VB|VBP)/;lemma:/(contain)/}=N0 Cond_2 : {}=N0 >/nsubj/ {}=N2 Cond_3 : {}=N0 >/(nmod:at|nmod:on|nmod:in)/ {}=N1 Action_1 : N0 >> arg1_contain >> N1 Action_2 : N0 >> arg2_contain >> N2 ####contained_on red rel #### RuleID : contained_on_2 Cond_1 : {lemma:/(contain)/}=N0 Cond_2 : {}=N2 >/acl/ {}=N0 Cond_3 : {}=N0 >/(nmod:on|nmod:atnmod:in)/ {}=N1 Action_1 : N0 >> arg1_contain >> N1 Action_2 : N0 >> arg2_contain >> N2 #####################Newly Added ####simple containing #### RuleID : containing_rel_sugar_1 Cond_1 : {word:/(containing)/}=N0 Cond_2 : {}=N1 >/acl/ {}=N0 Cond_3 : {}=N0 >/dobj/ {}=N2 Action_1 : N0 >> arg1_contain >> N1 Action_2 : N0 >> arg2_contain >> N2 ####simple has #### RuleID : has sugar_or_site_1 Cond_1 : {pos:/(VBZ|VBD|VB|VBP)/;lemma:/(has|had|have)/}=N0 Cond_2 : {}=N0 >/nsubj/ {}=N1 Cond_3 : {}=N0 >/dobj/ {}=N2 Action_1 : N0 >> arg1_contain >> N1 Action_2 : N0 >> arg2_contain >> N2 ####simple having #### RuleID : having_rel_sugar_or_site_1 Cond_1 : {word:/(having)/}=N0 Cond_2 : {}=N1 >/acl/ {}=N0 Cond_3 : {}=N0 >/dobj/ {}=N2 Action_1 : N0 >> arg1_contain >> N1 Action_2 : N0 >> arg2_contain >> N2 ####simple possess #### RuleID : possesses sugar_1 Cond_1 : {pos:/(VBZ|VBD|VB|VBD|VBP)/;lemma:/(possess)/}=N0 Cond_2 : {}=N0 >/nsubj/ {}=N1 Cond_3 : {}=N0 >/dobj/ {}=N2 Action_1 : N0 >> arg1_contain >> N1 Action_2 : N0 >> arg2_contain >> N2 ####simple possessing #### RuleID : possessing_rel_sugar_1 Cond_1 : {word:/(possessing)/}=N0 Cond_2 : {}=N1 >/acl/ {}=N0 Cond_3 : {}=N0 >/dobj/ {}=N2 Action_1 : N0 >> arg1_contain >> N1 Action_2 : N0 >> arg2_contain >> N2 ####simple carry/bear 3 arguments #### RuleID : carries sugar_1 Cond_1 : {pos:/(VBZ|VBD|VB|VBD|VBP)/;lemma:/(carry|bear)/}=N0 Cond_2 : {}=N0 >/nsubj/ {}=N1 Cond_3 : {}=N0 >/dobj/ {}=N2 Cond_4 : {}=N0 >/(nmod:at|nmod:on|nmod:in)/ {}=N3 Action_1 : N0 >> arg1_contain >> N1 Action_2 : N0 >> arg2_contain >> N2 Action_3 : N0 >> arg3_contain >> N3 ####simple carry/bear #### RuleID : carries sugar_1 Cond_1 : {pos:/(VBZ|VBD|VB|VBD|VBP)/;lemma:/(carry|bear)/}=N0 Cond_2 : {}=N0 >/nsubj/ {}=N1 Cond_3 : {}=N0 >/dobj/ {}=N2 Action_1 : N0 >> arg1_contain >> N1 Action_2 : N0 >> arg2_contain >> N2 ####simple carrying #### RuleID : possessing_rel_sugar_1 Cond_1 : {word:/(carrying)/}=N0 Cond_2 : {}=N1 >/acl/ {}=N0 Cond_3 : {}=N0 >/dobj/ {}=N2 Action_1 : N0 >> arg1_contain >> N1 Action_2 : N0 >> arg2_contain >> N2 ####was_located_at #### RuleID : sugar_was_located_at Cond_1 : {word:/(located|present)/}=N0 Cond_2 : {}=N0 >/nsubj/ {}=N1 Cond_3 : {}=N0 >/cop/ {}=N2 Cond_4 : {}=N0 >/(nmod:in|nmod:at|nmod:on|nmod:within)/ {}=N3 Action_1 : N0 >> arg1_located >> N3 Action_2 : N0 >> arg2_located >> N1 ####located_at_red_rel #### RuleID : sugar_was_located_at Cond_1 : {word:/(located|present)/}=N0 Cond_2 : {}=N1 >/acl/ {}=N0 Cond_3 : {}=N0 >/(nmod:in|nmod:at|nmod:on|nmod:within)/ {}=N2 Action_1 : N0 >> arg1_located >> N2 Action_2 : N0 >> arg2_located >> N1 ####was_localized_at #### RuleID : sugar_was_located_at Cond_1 : {pos:/VBN/;word:/(observed|localized|found|detected)/}=N0 Cond_2 : {}=N0 >/nsubjpass/ {}=N1 Cond_3 : {}=N0 >/auxpass/ {}=N2 Cond_4 : {}=N0 >/(nmod:in|nmod:at|nmod:on|nmod:within)/ {}=N3 Action_1 : N0 >> arg1_located >> N3 Action_2 : N0 >> arg2_located >> N1 ####localized_at_red_rel #### RuleID : sugar_was_located_at Cond_1 : {pos:/VBN/;word:/(localized|found|observed|detected)/}=N0 Cond_2 : {}=N1 >/acl/ {}=N0 Cond_3 : {}=N0 >/(nmod:in|nmod:at|nmod:on|nmod:within)/ {}=N2 Action_1 : N0 >> arg1_located >> N2 Action_2 : N0 >> arg2_located >> N1 ####heterogeneity of protein_1 #### RuleID : heterogeneity_1 Cond_1 : {word:/(.*geneity)/}=N0 Cond_2 : {}=N0 >/nmod:of/ {}=N1 Action_1 : N0 >> arg1_gly >> N1 ####site_1 #### RuleID : is_occupied_1 Cond_1 : {word:/(occupied|utilized|used)/}=N0 Cond_2 : {}=N0 >/(nsubj|nsubjpass)/ {}=N1 Action_1 : N0 >> arg2_used >> N1 ####site_1 #### RuleID : is_occupied_1 Cond_1 : {word:/(occupied|utilized|used)/}=N0 Cond_2 : {}=N0 >/(nsubj|nsubjpass)/ {}=N1 Cond_3 : {}=N1 >/(nmod:at|nmod:on)/ {}=N2 Action_1 : N0 >> arg2_used >> N2 ####trigger_present_in_on_at_1 #### RuleID : present_in_on_1 Cond_1 : {lemma:/(present|predominant|found|observed|localize)/}=N0 Cond_2 : {}=N0 >/(nmod:in|nmod:on|nmod:at)/ {}=N1 Cond_3 : {}=N0 >/nsubj/ {lemma:/glycosylation/}=N2 Action_1 : N2 >> arg2_gly >> N1 ####trigger_present_in_on_at_1 #### RuleID : present_in_on_1 Cond_1 : {lemma:/(present|predominant|found|observe|localize|locate)/}=N0 Cond_2 : {}=N0 >/(nmod:in|nmod:on|nmod:at)/ {}=N1 Cond_3 : {}=N0 >/nsubj/ {lemma:/glycosylation/}=N2 Action_1 : N2 >> arg2_gly >> N1 ####trigger_present_in_on_at_1 #### RuleID : present_in_on_1 Cond_1 : {lemma:/(present|predominant|found|observe|localize|locate)/}=N0 Cond_2 : {}=N0 >/(nmod:in|nmod:on|nmod:at)/ {}=N1 Cond_3 : {}=N0 >/nsubjpass/ {lemma:/glycosylation/}=N2 Action_1 : N2 >> arg1_gly >> N1 ####trigger sites_present_in_on_at_1 #### RuleID : present_in_on_1 Cond_1 : {lemma:/(present|predominant|found|observe|localize|locate)/}=N0 Cond_2 : {}=N0 >/(nmod:in|nmod:on|nmod:at)/ {}=N1 Cond_3 : {}=N0 >/nsubjpass/ {lemma:/site/}=N2 Cond_4 : {}=N2 >/compound/ {lemma:/glycosylation/}=N2 Action_1 : N2 >> arg1_gly >> N1 ####trigger_present_in_on_at_1 #### RuleID : present_in_on_1 Cond_1 : {lemma:/(present|predominant|found|observe|localize|locate)/}=N0 Cond_2 : {}=N0 >/(nmod:in|nmod:on|nmod:at)/ {}=N1 Cond_3 : {}=N0 >/nsubj/ {lemma:/site/}=N2 Cond_4 : {}=N2 >/compound/ {lemma:/glycosylation/}=N2 Action_1 : N2 >> arg1_gly >> N1 ####missing containing as adj like in mannose containing glycans ####trigger is carry include (reduced) rel clause also, #### trigger is present in or absent from #### ... sites, one of which carries: needs acl:relcl #####file = gly_others ####glycoprotein### ####glyoprotein#### RuleID : glycoprotein_1 Cond_1 : {word:/(.*glycoprotein|.*glycoproteins)/}=N0 Action_1 : N0 >> arg1_gly >> N0 ####glyosite#### RuleID : glycosite_1 Cond_1 : {word:/(.*glycosite|.*glycosites)/}=N0 Action_1 : N0 >> arg2_gly >> N0 ####glyosite#### RuleID : glycosite_2 Cond_1 : {word:/(.*glycosite|.*glycosites)/}=N0 Cond_1 : {}=N0 >/nmod:of/ {tag:/(NN|NNS)/}=N1 Action_1 : N0 >> arg1_gly >> N1 Action_2 : N0 >> arg2_gly >> N0 ####glycomap#### RuleID : glycosylation_mapping_of #### Cond_1 : {word:/(mapping|map)/}=N0 Cond_2 : {}=N0 >/nmod:of/ {}=N1 Cond_3 : {}=N0 >/compound/ {word:/glycosylation/}=N2 Action_1 : N0 >> arg1_gly >> N1 ####glyosite#### RuleID : glycosite_3 Cond_1 : {word:/(.*glycosite|.*glycosites)/}=N0 Cond_2 : {}=N0 >/nmod:at/ {tag:/(NN|NNS)/}=N1 Action_1 : N0 >> arg2_gly >> N1 ####glyopeptide#### RuleID : glycopeptide_1 Cond_1 : {word:/(.*glycopeptide|.*glycopeptides)/}=N0 Action_1 : N0 >> arg2_gly >> N0 ####glyopeptide#### RuleID : glycopeptide_of_from_1 Cond_1 : {word:/(.*glycopeptide|.*glycopeptides)/}=N0 Cond_1 : {}=N0 >/(nmod:of|nmod:from)/ {tag:/(NN|NNS)/}=N1 Action_1 : N0 >> arg1_gly >> N1 Action_2 : N0 >> arg2_gly >> N0 ####glycoform_at_1#### RuleID : glycoform_1 Cond_1 : {word:/(.*glycoform|.*glycoforms)/}=N0 >/nmod:(at|in|on)/ {tag:/(NN|NNS)/}=N1 Action_1 : N0 >> arg2_gly >> N1 ####glycoform_1#### RuleID : glycoform_1 Cond_1 : {word:/(.*glycoform|.*glycoforms)/}=N0 >/nmod:of/ {tag:/(NN|NNS)/}=N1 Action_1 : N0 >> arg1_gly >> N1 ####glycoform_2#### RuleID : glycoform_2 Cond_2 : {word:/(.*glycoform|.*glycoforms)/}=N0 >/compound/ {tag:/(NN|NNS)/}=N1 Action_1 : N0 >> arg1_gly >> N1 ####glycoisoform_1#### RuleID : glycoform_1 Cond_1 : {word:/(.*glycoisoform|.*glycoisoforms)/}=N0 >/nmod:of/ {tag:/(NN|NNS)/}=N1 Action_1 : N0 >> arg1_gly >> N1 ####glycoisform_2#### RuleID : glycoisoform_2 Cond_1 : {word:/(.*glycoisoform|.*glycoisoforms)/}=N0 >/compound/ {tag:/(NN|NNS)/}=N1 Action_1 : N0 >> arg1_gly >> N1 #####file = other-tion ##### glcnacylation, mannosylation, sialylation ####effect/influence/role of sialylation (no of) on/on/in VBG function of X DONE #### ####effect/role of sialylation (no of) on/in function of X DONE #### #### sialylation contributes to function of X DONE ####via/through sialylation of X#### ####X does something via/through sialylation of X#### ####something was done to X function via/through sialylation of X#### ####something was done to function of X via/through sialylation of X#### ####sialylation (no of X but ok of site) is critical for X function#### ####sialylation is critical for function of X#### #### sialylation state/profile/status/pattern of X DONE ### #### sialylation occurs at site DONE #### X with sialylation DONE #### sialylation influences/contributes ... #####role ####role of sialylation in of #### RuleID : role_sialylation_in_of Cond_1 : {word:/(.*sialylation)/}=N0 Cond_2 : {lemma:/role/} = N1 >/nmod:of/ {}=N0 Cond_3 : {}=N1 >/(nmod:in)/ {}=N2 Cond_4 : {}=N2 >/nmod:of/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####role of sialylation in compound#### RuleID : role_sialylation_in_compound Cond_1 : {word:/(.*sialylation)/}=N0 Cond_2 : {lemma:/role/} = N1 >/nmod:of/ {}=N0 Cond_3 : {}=N1 >/(nmod:in)/ {}=N2 Cond_4 : {}=N2 >/compound/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####role of sialylation VBG of #### RuleID : role_sialylation_VBG_of_1 Cond_1 : {word:/(.*sialylation)/}=N0 Cond_2 : {lemma:/role/} = N1 >/nmod:of/ {}=N0 Cond_3 : {}=N1 >/(acl)/ {pos:/VBG/}=N2 Cond_4 : {}=N2 >/dobj/ {}=N3 Cond_5 : {}=N3 >/nmod:of/ {}=N4 Action_1 : N0 >> arg1_gly >> N4 ####role of sialylation VBG comp #### RuleID : role_sialylation_in_compound Cond_1 : {word:/(.*sialylation)/}=N0 Cond_2 : {lemma:/role/} = N1 >/nmod:of/ {}=N0 Cond_3 : {}=N1 >/(acl)/ {pos:/VBG/}=N2 Cond_4 : {}=N2 >/dobj/ {}=N3 Cond_5 : {}=N3 >/compound/ {}=N4 Action_1 : N0 >> arg1_gly >> N4 ####effect of sialylation 1 #### RuleID : role_sialylation_on_of Cond_1 : {word:/(.*sialylation)/}=N0 Cond_2 : {lemma:/(effect|influence)/} = N1 >/nmod:of/ {}=N0 Cond_3 : {}=N1 >/(nmod:on)/ {}=N2 Cond_4 : {}=N2 >/nmod:of/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####effect of sialylation 2 #### RuleID : effect sialylation_on_compound Cond_1 : {word:/(.*sialylation)/}=N0 Cond_2 : {lemma:/(effect|influence)/} = N1 >/nmod:of/ {}=N0 Cond_3 : {}=N1 >/(nmod:on)/ {}=N2 Cond_4 : {}=N2 >/compound/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####sialylation contributes to of #### RuleID : sialylation_contribute_to_of Cond_1 : {word:/(.*sialylation)/}=N0 Cond_2 : {lemma:/contribute/} = N1 >/nsubj/ {}=N0 Cond_3 : {}=N1 >/(nmod:to)/ {}=N2 Cond_4 : {}=N2 >/nmod:of/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####sialylation contribute to comp #### RuleID : sialylation_contributes to_compound Cond_1 : {word:/(.*sialylation)/}=N0 Cond_2 : {lemma:/contribute/} = N1 >/nsubj/ {}=N0 Cond_3 : {}=N1 >/(nmod:to)/ {}=N2 Cond_4 : {}=N2 >/compound/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####sialylation_crtical_for_of#### RuleID : sialylation_required_for_of Cond_1 : {word:/(.*sialylation)/}=N0 Cond_2 : {word:/(essential|critical|important)/} = N1 >/nsubj/ {}=N0 Cond_3 : {}=N1 >/(nmod:for)/ {}=N2 Cond_4 : {}=N2 >/nmod:of/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####sialylation_critical_for_of#### RuleID : sialylation_required_for_of Cond_1 : {word:/(.*sialylation)/}=N0 Cond_2 : {word:/(essential|critical|important)/} = N1 >/nsubj/ {}=N0 Cond_3 : {}=N1 >/(nmod:for)/ {}=N2 Cond_4 : {}=N2 >/compound/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####sialylation_required_for_of#### RuleID : sialylation_required_for_of Cond_1 : {word:/(.*sialylation)/}=N0 Cond_2 : {word:/(required)/} = N1 >/nsubjpass/ {}=N0 Cond_3 : {}=N1 >/(nmod:for)/ {}=N2 Cond_4 : {}=N2 >/nmod:of/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####sialylation_required_for_of#### RuleID : sialylation_required_for_of Cond_1 : {word:/(.*sialylation)/}=N0 Cond_2 : {word:/(required)/} = N1 >/nsubjpass/ {}=N0 Cond_3 : {}=N1 >/(nmod:for)/ {}=N2 Cond_4 : {}=N2 >/compound/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####sialylation_affects_of#### RuleID : sialylation_required_for_of Cond_1 : {word:/(.*sialylation)/}=N0 Cond_2 : {lemma:/(affect)/} = N1 >/nsubj/ {}=N0 Cond_3 : {}=N1 >/(dobj)/ {}=N2 Cond_4 : {}=N2 >/nmod:of/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####sialylation_affects_of#### RuleID : sialylation_required_for_of Cond_1 : {word:/(.*sialylation)/}=N0 Cond_2 : {lemma:/(affect)/} = N1 >/nsubj/ {}=N0 Cond_3 : {}=N1 >/(dobj)/ {}=N2 Cond_4 : {}=N2 >/compound/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####Xs PTM#### RuleID : ptm_its_1 Cond_1 : {word:/(.*sialylation)/}=N0 Cond_2 : {}=N0 >/nmod:poss/ {}=N1 Action_1 : N0 >> arg0_ptm >> N1 ####detect sialylation in#### RuleID : detected_sialylation_in_1 Cond_1 : {word:/(.*sialylation)/}=N0 Cond_2 : {pos:/(VB.*)/}=N1 >/dobj/ {}=N0 Cond_3 : {}=N1 >/(nmod:in|nmod:at|nmod:on)/ {}=N2 Action_1 : N1 >> arg1_gly >> N2 ####sialylation was detected in#### RuleID : sialylation_was_detected_in_1 Cond_1 : {lemma:/(.*sialylation)/}=N0 Cond_2 : {pos:/(VB.*)/}=N1 >/nsubjpass/ {}=N0 Cond_3 : {}=N1 >/(nmod:in|nmod:at|nmod:on)/ {}=N2 Action_1 : N0 >> arg1_gly >> N2 ####sialylation in#### RuleID : sialylation_in_1 Cond_1 : {word:/(.*sialylation)/}=N0 Cond_2 : {}=N0 >/(nmod:in|nmod:at|nmod:on)/ {}=N1 Action_1 : N0 >> arg1_gly >> N1 ####undergo sialylation #### RuleID : undergo_sialylation_1 Cond_1 : {word:/(.*sialylation)/}=N0 Cond_2 : {lemma:/undergo|underwent/}=N1 >/(dobj)/ {}=N0 Cond_3 : {}=N1 >nsubj {}=N2 Action_1 : N0 >> arg1_gly >> N2 #### with sialylation #### RuleID : with sialylation_1 Cond_1 : {word:/(.*sialylation)/}=N0 Cond_2 : {pos:/NN.*/} = N1 >/nmod:with/ {}=N0 Action_1 : N0 >> arg1_gly >> N1 ####sialylation pattern of #### RuleID : sialylation_pattern_of_1 Cond_1 : {word:/(.*sialylation)/}=N0 Cond_2 : {lemma:/pattern|profile|state|status|analysis/} = N1 >/compound/ {}=N0 Cond_3 : {}=N1 >/(nmod:of)/ {}=N2 Action_1 : N0 >> arg1_gly >> N2 ####sialylation pattern at #### RuleID : sialylation_pattern_at_1 Cond_1 : {word:/(.*sialylation)/}=N0 Cond_2 : {lemma:/pattern|profile|state|status/} = N1 >/compound/ {}=N0 Cond_3 : {}=N1 >/(nmod:at)/ {}=N2 Action_1 : N0 >> arg2_gly >> N2 ####sialylation pattern of #### RuleID : sialylation_pattern_of_1 Cond_1 : {word:/(.*sialylation)/}=N0 Cond_2 : {word:/.*ogeneity/} = N1 >/compound/ {}=N0 Cond_3 : {}=N1 >/(nmod:of)/ {}=N2 Action_1 : N0 >> arg1_gly >> N2 ####sialylation heterogeneity at #### RuleID : sialylation_pattern_at_1 Cond_1 : {word:/(.*sialylation)/}=N0 Cond_2 : {word:/.*ogeneity/} = N1 >/compound/ {}=N0 Cond_3 : {}=N1 >/(nmod:at|nmod:in|nmod:on)/ {}=N2 Action_1 : N0 >> arg2_gly >> N2 ####sialylation of #### RuleID : sialylation_of_1 Cond_1 : {word:/(.*sialylation)/}=N0 Cond_2 : {}=N0 >/(nmod:of)/ {}=N1 Action_1 : N0 >> arg1_gly >> N1 ####site sialylation_1 #### RuleID : sialylation_sites Cond_1 : {word:/(.*sialylation)/}=N0 Cond_2 : {lemma:/site/}=N1 >/(compound)/ {}=N0 Action_1 : N0 >> arg2_gly >> N1 ####site sialylation_site_at_1 #### RuleID : sialylation_sites_at Cond_1 : {word:/(.*sialylation)/}=N0 Cond_2 : {lemma:/site/}=N1 >/(compound)/ {}=N0 Cond_3 : {}=N1 >/(nmod:at)/ {}=N2 Action_1 : N0 >> arg2_gly >> N2 ####sequon sialylation_1 #### RuleID : sialylation_sites Cond_1 : {word:/(.*sialylation)/}=N0 Cond_2 : {lemma:/sequon/}=N1 >/(compound)/ {}=N0 Action_1 : N0 >> arg2_gly >> N1 ####motif sialylation_1 #### RuleID : sialylation_sites Cond_1 : {word:/(.*sialylation)/}=N0 Cond_2 : {lemma:/motif/}=N1 >/(compound)/ {}=N0 Action_1 : N0 >> arg2_gly >> N1 ####sialylation_occurs_at### RuleID : sialylation_occurs_at Cond_1 : {word:/(.*sialylation)/}=N0 Cond_2 : {lemma:/occur/}=N1 >/nsubj/ {}=N0 Cond_3 : {}=N1 >/(nmod:in|nmod:on|nmod:at)/ {}=N2 Action_1 : N0 >> arg2_gly >> N2 ##### glcnacylation, mannosylation, sialylation ####effect/influence/role of mannosylation (no of) on/on/in VBG function of X DONE #### ####effect/role of mannosylation (no of) on/in function of X DONE #### #### mannosylation contributes to function of X DONE ####via/through mannosylation of X#### ####X does something via/through mannosylation of X#### ####something was done to X function via/through mannosylation of X#### ####something was done to function of X via/through mannosylation of X#### ####mannosylation (no of X but ok of site) is critical for X function#### ####mannosylation is critical for function of X#### #### mannosylation state/profile/status/pattern of X DONE ### #### mannosylation occurs at site DONE #### X with mannosylation DONE #### mannosylation influences/contributes ... #####role ####role of mannosylation in of #### RuleID : role_mannosylation_in_of Cond_1 : {word:/(.*mannosylation)/}=N0 Cond_2 : {lemma:/role/} = N1 >/nmod:of/ {}=N0 Cond_3 : {}=N1 >/(nmod:in)/ {}=N2 Cond_4 : {}=N2 >/nmod:of/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####role of mannosylation in compound#### RuleID : role_mannosylation_in_compound Cond_1 : {word:/(.*mannosylation)/}=N0 Cond_2 : {lemma:/role/} = N1 >/nmod:of/ {}=N0 Cond_3 : {}=N1 >/(nmod:in)/ {}=N2 Cond_4 : {}=N2 >/compound/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####role of mannosylation VBG of #### RuleID : role_mannosylation_VBG_of_1 Cond_1 : {word:/(.*mannosylation)/}=N0 Cond_2 : {lemma:/role/} = N1 >/nmod:of/ {}=N0 Cond_3 : {}=N1 >/(acl)/ {pos:/VBG/}=N2 Cond_4 : {}=N2 >/dobj/ {}=N3 Cond_5 : {}=N3 >/nmod:of/ {}=N4 Action_1 : N0 >> arg1_gly >> N4 ####role of mannosylation VBG comp #### RuleID : role_mannosylation_in_compound Cond_1 : {word:/(.*mannosylation)/}=N0 Cond_2 : {lemma:/role/} = N1 >/nmod:of/ {}=N0 Cond_3 : {}=N1 >/(acl)/ {pos:/VBG/}=N2 Cond_4 : {}=N2 >/dobj/ {}=N3 Cond_5 : {}=N3 >/compound/ {}=N4 Action_1 : N0 >> arg1_gly >> N4 ####effect of mannosylation 1 #### RuleID : role_mannosylation_on_of Cond_1 : {word:/(.*mannosylation)/}=N0 Cond_2 : {lemma:/(effect|influence)/} = N1 >/nmod:of/ {}=N0 Cond_3 : {}=N1 >/(nmod:on)/ {}=N2 Cond_4 : {}=N2 >/nmod:of/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####effect of mannosylation 2 #### RuleID : effect mannosylation_on_compound Cond_1 : {word:/(.*mannosylation)/}=N0 Cond_2 : {lemma:/(effect|influence)/} = N1 >/nmod:of/ {}=N0 Cond_3 : {}=N1 >/(nmod:on)/ {}=N2 Cond_4 : {}=N2 >/compound/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####mannosylation contributes to of #### RuleID : mannosylation_contribute_to_of Cond_1 : {word:/(.*mannosylation)/}=N0 Cond_2 : {lemma:/contribute/} = N1 >/nsubj/ {}=N0 Cond_3 : {}=N1 >/(nmod:to)/ {}=N2 Cond_4 : {}=N2 >/nmod:of/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####mannosylation contribute to comp #### RuleID : mannosylation_contributes to_compound Cond_1 : {word:/(.*mannosylation)/}=N0 Cond_2 : {lemma:/contribute/} = N1 >/nsubj/ {}=N0 Cond_3 : {}=N1 >/(nmod:to)/ {}=N2 Cond_4 : {}=N2 >/compound/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####mannosylation_crtical_for_of#### RuleID : mannosylation_required_for_of Cond_1 : {word:/(.*mannosylation)/}=N0 Cond_2 : {word:/(essential|critical|important)/} = N1 >/nsubj/ {}=N0 Cond_3 : {}=N1 >/(nmod:for)/ {}=N2 Cond_4 : {}=N2 >/nmod:of/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####mannosylation_critical_for_of#### RuleID : mannosylation_required_for_of Cond_1 : {word:/(.*mannosylation)/}=N0 Cond_2 : {word:/(essential|critical|important)/} = N1 >/nsubj/ {}=N0 Cond_3 : {}=N1 >/(nmod:for)/ {}=N2 Cond_4 : {}=N2 >/compound/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####mannosylation_required_for_of#### RuleID : mannosylation_required_for_of Cond_1 : {word:/(.*mannosylation)/}=N0 Cond_2 : {word:/(required)/} = N1 >/nsubjpass/ {}=N0 Cond_3 : {}=N1 >/(nmod:for)/ {}=N2 Cond_4 : {}=N2 >/nmod:of/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####mannosylation_required_for_of#### RuleID : mannosylation_required_for_of Cond_1 : {word:/(.*mannosylation)/}=N0 Cond_2 : {word:/(required)/} = N1 >/nsubjpass/ {}=N0 Cond_3 : {}=N1 >/(nmod:for)/ {}=N2 Cond_4 : {}=N2 >/compound/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####mannosylation_affects_of#### RuleID : mannosylation_required_for_of Cond_1 : {word:/(.*mannosylation)/}=N0 Cond_2 : {lemma:/(affect)/} = N1 >/nsubj/ {}=N0 Cond_3 : {}=N1 >/(dobj)/ {}=N2 Cond_4 : {}=N2 >/nmod:of/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####mannosylation_affects_of#### RuleID : mannosylation_required_for_of Cond_1 : {word:/(.*mannosylation)/}=N0 Cond_2 : {lemma:/(affect)/} = N1 >/nsubj/ {}=N0 Cond_3 : {}=N1 >/(dobj)/ {}=N2 Cond_4 : {}=N2 >/compound/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####Xs PTM#### RuleID : ptm_its_1 Cond_1 : {word:/(.*mannosylation)/}=N0 Cond_2 : {}=N0 >/nmod:poss/ {}=N1 Action_1 : N0 >> arg0_ptm >> N1 ####detect mannosylation in#### RuleID : detected_mannosylation_in_1 Cond_1 : {word:/(.*mannosylation)/}=N0 Cond_2 : {pos:/(VB.*)/}=N1 >/dobj/ {}=N0 Cond_3 : {}=N1 >/(nmod:in|nmod:at|nmod:on)/ {}=N2 Action_1 : N1 >> arg1_gly >> N2 ####mannosylation was detected in#### RuleID : mannosylation_was_detected_in_1 Cond_1 : {lemma:/(.*mannosylation)/}=N0 Cond_2 : {pos:/(VB.*)/}=N1 >/nsubjpass/ {}=N0 Cond_3 : {}=N1 >/(nmod:in|nmod:at|nmod:on)/ {}=N2 Action_1 : N0 >> arg1_gly >> N2 ####mannosylation in#### RuleID : mannosylation_in_1 Cond_1 : {word:/(.*mannosylation)/}=N0 Cond_2 : {}=N0 >/(nmod:in|nmod:at|nmod:on)/ {}=N1 Action_1 : N0 >> arg1_gly >> N1 ####undergo mannosylation #### RuleID : undergo_mannosylation_1 Cond_1 : {word:/(.*mannosylation)/}=N0 Cond_2 : {lemma:/undergo|underwent/}=N1 >/(dobj)/ {}=N0 Cond_3 : {}=N1 >nsubj {}=N2 Action_1 : N0 >> arg1_gly >> N2 #### with mannosylation #### RuleID : with mannosylation_1 Cond_1 : {word:/(.*mannosylation)/}=N0 Cond_2 : {pos:/NN.*/} = N1 >/nmod:with/ {}=N0 Action_1 : N0 >> arg1_gly >> N1 ####mannosylation pattern of #### RuleID : mannosylation_pattern_of_1 Cond_1 : {word:/(.*mannosylation)/}=N0 Cond_2 : {lemma:/pattern|profile|state|status|analysis/} = N1 >/compound/ {}=N0 Cond_3 : {}=N1 >/(nmod:of)/ {}=N2 Action_1 : N0 >> arg1_gly >> N2 ####mannosylation pattern at #### RuleID : mannosylation_pattern_at_1 Cond_1 : {word:/(.*mannosylation)/}=N0 Cond_2 : {lemma:/pattern|profile|state|status/} = N1 >/compound/ {}=N0 Cond_3 : {}=N1 >/(nmod:at)/ {}=N2 Action_1 : N0 >> arg2_gly >> N2 ####mannosylation pattern of #### RuleID : mannosylation_pattern_of_1 Cond_1 : {word:/(.*mannosylation)/}=N0 Cond_2 : {word:/.*ogeneity/} = N1 >/compound/ {}=N0 Cond_3 : {}=N1 >/(nmod:of)/ {}=N2 Action_1 : N0 >> arg1_gly >> N2 ####mannosylation heterogeneity at #### RuleID : mannosylation_pattern_at_1 Cond_1 : {word:/(.*mannosylation)/}=N0 Cond_2 : {word:/.*ogeneity/} = N1 >/compound/ {}=N0 Cond_3 : {}=N1 >/(nmod:at|nmod:in|nmod:on)/ {}=N2 Action_1 : N0 >> arg2_gly >> N2 ####mannosylation of #### RuleID : mannosylation_of_1 Cond_1 : {word:/(.*mannosylation)/}=N0 Cond_2 : {}=N0 >/(nmod:of)/ {}=N1 Action_1 : N0 >> arg1_gly >> N1 ####site mannosylation_1 #### RuleID : mannosylation_sites Cond_1 : {word:/(.*mannosylation)/}=N0 Cond_2 : {lemma:/site/}=N1 >/(compound)/ {}=N0 Action_1 : N0 >> arg2_gly >> N1 ####site mannosylation_site_at_1 #### RuleID : mannosylation_sites_at Cond_1 : {word:/(.*mannosylation)/}=N0 Cond_2 : {lemma:/site/}=N1 >/(compound)/ {}=N0 Cond_3 : {}=N1 >/(nmod:at)/ {}=N2 Action_1 : N0 >> arg2_gly >> N2 ####sequon mannosylation_1 #### RuleID : mannosylation_sites Cond_1 : {word:/(.*mannosylation)/}=N0 Cond_2 : {lemma:/sequon/}=N1 >/(compound)/ {}=N0 Action_1 : N0 >> arg2_gly >> N1 ####motif mannosylation_1 #### RuleID : mannosylation_sites Cond_1 : {word:/(.*mannosylation)/}=N0 Cond_2 : {lemma:/motif/}=N1 >/(compound)/ {}=N0 Action_1 : N0 >> arg2_gly >> N1 ####mannosylation_occurs_at### RuleID : mannosylation_occurs_at Cond_1 : {word:/(.*mannosylation)/}=N0 Cond_2 : {lemma:/occur/}=N1 >/nsubj/ {}=N0 Cond_3 : {}=N1 >/(nmod:in|nmod:on|nmod:at)/ {}=N2 Action_1 : N0 >> arg2_gly >> N2 ##### glcnacylation, mannosylation, sialylation ####effect/influence/role of fucosylation (no of) on/on/in VBG function of X DONE #### ####effect/role of fucosylation (no of) on/in function of X DONE #### #### fucosylation contributes to function of X DONE ####via/through fucosylation of X#### ####X does something via/through fucosylation of X#### ####something was done to X function via/through fucosylation of X#### ####something was done to function of X via/through fucosylation of X#### ####fucosylation (no of X but ok of site) is critical for X function#### ####fucosylation is critical for function of X#### #### fucosylation state/profile/status/pattern of X DONE ### #### fucosylation occurs at site DONE #### X with fucosylation DONE #### fucosylation influences/contributes ... #####role ####role of fucosylation in of #### RuleID : role_fucosylation_in_of Cond_1 : {word:/(.*fucosylation)/}=N0 Cond_2 : {lemma:/role/} = N1 >/nmod:of/ {}=N0 Cond_3 : {}=N1 >/(nmod:in)/ {}=N2 Cond_4 : {}=N2 >/nmod:of/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####role of fucosylation in compound#### RuleID : role_fucosylation_in_compound Cond_1 : {word:/(.*fucosylation)/}=N0 Cond_2 : {lemma:/role/} = N1 >/nmod:of/ {}=N0 Cond_3 : {}=N1 >/(nmod:in)/ {}=N2 Cond_4 : {}=N2 >/compound/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####role of fucosylation VBG of #### RuleID : role_fucosylation_VBG_of_1 Cond_1 : {word:/(.*fucosylation)/}=N0 Cond_2 : {lemma:/role/} = N1 >/nmod:of/ {}=N0 Cond_3 : {}=N1 >/(acl)/ {pos:/VBG/}=N2 Cond_4 : {}=N2 >/dobj/ {}=N3 Cond_5 : {}=N3 >/nmod:of/ {}=N4 Action_1 : N0 >> arg1_gly >> N4 ####role of fucosylation VBG comp #### RuleID : role_fucosylation_in_compound Cond_1 : {word:/(.*fucosylation)/}=N0 Cond_2 : {lemma:/role/} = N1 >/nmod:of/ {}=N0 Cond_3 : {}=N1 >/(acl)/ {pos:/VBG/}=N2 Cond_4 : {}=N2 >/dobj/ {}=N3 Cond_5 : {}=N3 >/compound/ {}=N4 Action_1 : N0 >> arg1_gly >> N4 ####effect of fucosylation 1 #### RuleID : role_fucosylation_on_of Cond_1 : {word:/(.*fucosylation)/}=N0 Cond_2 : {lemma:/(effect|influence)/} = N1 >/nmod:of/ {}=N0 Cond_3 : {}=N1 >/(nmod:on)/ {}=N2 Cond_4 : {}=N2 >/nmod:of/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####effect of fucosylation 2 #### RuleID : effect fucosylation_on_compound Cond_1 : {word:/(.*fucosylation)/}=N0 Cond_2 : {lemma:/(effect|influence)/} = N1 >/nmod:of/ {}=N0 Cond_3 : {}=N1 >/(nmod:on)/ {}=N2 Cond_4 : {}=N2 >/compound/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####fucosylation contributes to of #### RuleID : fucosylation_contribute_to_of Cond_1 : {word:/(.*fucosylation)/}=N0 Cond_2 : {lemma:/contribute/} = N1 >/nsubj/ {}=N0 Cond_3 : {}=N1 >/(nmod:to)/ {}=N2 Cond_4 : {}=N2 >/nmod:of/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####fucosylation contribute to comp #### RuleID : fucosylation_contributes to_compound Cond_1 : {word:/(.*fucosylation)/}=N0 Cond_2 : {lemma:/contribute/} = N1 >/nsubj/ {}=N0 Cond_3 : {}=N1 >/(nmod:to)/ {}=N2 Cond_4 : {}=N2 >/compound/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####fucosylation_crtical_for_of#### RuleID : fucosylation_required_for_of Cond_1 : {word:/(.*fucosylation)/}=N0 Cond_2 : {word:/(essential|critical|important)/} = N1 >/nsubj/ {}=N0 Cond_3 : {}=N1 >/(nmod:for)/ {}=N2 Cond_4 : {}=N2 >/nmod:of/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####fucosylation_critical_for_of#### RuleID : fucosylation_required_for_of Cond_1 : {word:/(.*fucosylation)/}=N0 Cond_2 : {word:/(essential|critical|important)/} = N1 >/nsubj/ {}=N0 Cond_3 : {}=N1 >/(nmod:for)/ {}=N2 Cond_4 : {}=N2 >/compound/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####fucosylation_required_for_of#### RuleID : fucosylation_required_for_of Cond_1 : {word:/(.*fucosylation)/}=N0 Cond_2 : {word:/(required)/} = N1 >/nsubjpass/ {}=N0 Cond_3 : {}=N1 >/(nmod:for)/ {}=N2 Cond_4 : {}=N2 >/nmod:of/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####fucosylation_required_for_of#### RuleID : fucosylation_required_for_of Cond_1 : {word:/(.*fucosylation)/}=N0 Cond_2 : {word:/(required)/} = N1 >/nsubjpass/ {}=N0 Cond_3 : {}=N1 >/(nmod:for)/ {}=N2 Cond_4 : {}=N2 >/compound/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####fucosylation_affects_of#### RuleID : fucosylation_required_for_of Cond_1 : {word:/(.*fucosylation)/}=N0 Cond_2 : {lemma:/(affect)/} = N1 >/nsubj/ {}=N0 Cond_3 : {}=N1 >/(dobj)/ {}=N2 Cond_4 : {}=N2 >/nmod:of/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####fucosylation_affects_of#### RuleID : fucosylation_required_for_of Cond_1 : {word:/(.*fucosylation)/}=N0 Cond_2 : {lemma:/(affect)/} = N1 >/nsubj/ {}=N0 Cond_3 : {}=N1 >/(dobj)/ {}=N2 Cond_4 : {}=N2 >/compound/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####Xs PTM#### RuleID : ptm_its_1 Cond_1 : {word:/(.*fucosylation)/}=N0 Cond_2 : {}=N0 >/nmod:poss/ {}=N1 Action_1 : N0 >> arg0_ptm >> N1 ####detect fucosylation in#### RuleID : detected_fucosylation_in_1 Cond_1 : {word:/(.*fucosylation)/}=N0 Cond_2 : {pos:/(VB.*)/}=N1 >/dobj/ {}=N0 Cond_3 : {}=N1 >/(nmod:in|nmod:at|nmod:on)/ {}=N2 Action_1 : N1 >> arg1_gly >> N2 ####fucosylation was detected in#### RuleID : fucosylation_was_detected_in_1 Cond_1 : {lemma:/(.*fucosylation)/}=N0 Cond_2 : {pos:/(VB.*)/}=N1 >/nsubjpass/ {}=N0 Cond_3 : {}=N1 >/(nmod:in|nmod:at|nmod:on)/ {}=N2 Action_1 : N0 >> arg1_gly >> N2 ####fucosylation in#### RuleID : fucosylation_in_1 Cond_1 : {word:/(.*fucosylation)/}=N0 Cond_2 : {}=N0 >/(nmod:in|nmod:at|nmod:on)/ {}=N1 Action_1 : N0 >> arg1_gly >> N1 ####undergo fucosylation #### RuleID : undergo_fucosylation_1 Cond_1 : {word:/(.*fucosylation)/}=N0 Cond_2 : {lemma:/undergo|underwent/}=N1 >/(dobj)/ {}=N0 Cond_3 : {}=N1 >nsubj {}=N2 Action_1 : N0 >> arg1_gly >> N2 #### with fucosylation #### RuleID : with fucosylation_1 Cond_1 : {word:/(.*fucosylation)/}=N0 Cond_2 : {pos:/NN.*/} = N1 >/nmod:with/ {}=N0 Action_1 : N0 >> arg1_gly >> N1 ####fucosylation pattern of #### RuleID : fucosylation_pattern_of_1 Cond_1 : {word:/(.*fucosylation)/}=N0 Cond_2 : {lemma:/pattern|profile|state|status|analysis/} = N1 >/compound/ {}=N0 Cond_3 : {}=N1 >/(nmod:of)/ {}=N2 Action_1 : N0 >> arg1_gly >> N2 ####fucosylation pattern at #### RuleID : fucosylation_pattern_at_1 Cond_1 : {word:/(.*fucosylation)/}=N0 Cond_2 : {lemma:/pattern|profile|state|status/} = N1 >/compound/ {}=N0 Cond_3 : {}=N1 >/(nmod:at)/ {}=N2 Action_1 : N0 >> arg2_gly >> N2 ####fucosylation pattern of #### RuleID : fucosylation_pattern_of_1 Cond_1 : {word:/(.*fucosylation)/}=N0 Cond_2 : {word:/.*ogeneity/} = N1 >/compound/ {}=N0 Cond_3 : {}=N1 >/(nmod:of)/ {}=N2 Action_1 : N0 >> arg1_gly >> N2 ####fucosylation heterogeneity at #### RuleID : fucosylation_pattern_at_1 Cond_1 : {word:/(.*fucosylation)/}=N0 Cond_2 : {word:/.*ogeneity/} = N1 >/compound/ {}=N0 Cond_3 : {}=N1 >/(nmod:at|nmod:in|nmod:on)/ {}=N2 Action_1 : N0 >> arg2_gly >> N2 ####fucosylation of #### RuleID : fucosylation_of_1 Cond_1 : {lemma:/(.*fucosylation)/}=N0 Cond_2 : {}=N0 >/(nmod:of)/ {}=N1 Action_1 : N0 >> arg1_gly >> N1 ####site fucosylation_1 #### RuleID : fucosylation_sites Cond_1 : {word:/(.*fucosylation)/}=N0 Cond_2 : {lemma:/site/}=N1 >/(compound)/ {}=N0 Action_1 : N0 >> arg2_gly >> N1 ####site fucosylation_site_at_1 #### RuleID : fucosylation_sites_at Cond_1 : {word:/(.*fucosylation)/}=N0 Cond_2 : {lemma:/site/}=N1 >/(compound)/ {}=N0 Cond_3 : {}=N1 >/(nmod:at)/ {}=N2 Action_1 : N0 >> arg2_gly >> N2 ####sequon fucosylation_1 #### RuleID : fucosylation_sites Cond_1 : {word:/(.*fucosylation)/}=N0 Cond_2 : {lemma:/sequon/}=N1 >/(compound)/ {}=N0 Action_1 : N0 >> arg2_gly >> N1 ####motif fucosylation_1 #### RuleID : fucosylation_sites Cond_1 : {word:/(.*fucosylation)/}=N0 Cond_2 : {lemma:/motif/}=N1 >/(compound)/ {}=N0 Action_1 : N0 >> arg2_gly >> N1 ####fucosylation_occurs_at### RuleID : fucosylation_occurs_at Cond_1 : {word:/(.*fucosylation)/}=N0 Cond_2 : {lemma:/occur/}=N1 >/nsubj/ {}=N0 Cond_3 : {}=N1 >/(nmod:in|nmod:on|nmod:at)/ {}=N2 Action_1 : N0 >> arg2_gly >> N2 ##### glcnacylation, mannosylation, sialylation ####effect/influence/role of glcnacylation (no of) on/on/in VBG function of X DONE #### ####effect/role of glcnacylation (no of) on/in function of X DONE #### #### glcnacylation contributes to function of X DONE ####via/through glcnacylation of X#### ####X does something via/through glcnacylation of X#### ####something was done to X function via/through glcnacylation of X#### ####something was done to function of X via/through glcnacylation of X#### ####glcnacylation (no of X but ok of site) is critical for X function#### ####glcnacylation is critical for function of X#### #### glcnacylation state/profile/status/pattern of X DONE ### #### glcnacylation occurs at site DONE #### X with glcnacylation DONE #### glcnacylation influences/contributes ... #####role ####role of glcnacylation in of #### RuleID : role_glcnacylation_in_of Cond_1 : {word:/(.*glcnacylation)/}=N0 Cond_2 : {lemma:/role/} = N1 >/nmod:of/ {}=N0 Cond_3 : {}=N1 >/(nmod:in)/ {}=N2 Cond_4 : {}=N2 >/nmod:of/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####role of glcnacylation in compound#### RuleID : role_glcnacylation_in_compound Cond_1 : {word:/(.*glcnacylation)/}=N0 Cond_2 : {lemma:/role/} = N1 >/nmod:of/ {}=N0 Cond_3 : {}=N1 >/(nmod:in)/ {}=N2 Cond_4 : {}=N2 >/compound/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####role of glcnacylation VBG of #### RuleID : role_glcnacylation_VBG_of_1 Cond_1 : {word:/(.*glcnacylation)/}=N0 Cond_2 : {lemma:/role/} = N1 >/nmod:of/ {}=N0 Cond_3 : {}=N1 >/(acl)/ {pos:/VBG/}=N2 Cond_4 : {}=N2 >/dobj/ {}=N3 Cond_5 : {}=N3 >/nmod:of/ {}=N4 Action_1 : N0 >> arg1_gly >> N4 ####role of glcnacylation VBG comp #### RuleID : role_glcnacylation_in_compound Cond_1 : {word:/(.*glcnacylation)/}=N0 Cond_2 : {lemma:/role/} = N1 >/nmod:of/ {}=N0 Cond_3 : {}=N1 >/(acl)/ {pos:/VBG/}=N2 Cond_4 : {}=N2 >/dobj/ {}=N3 Cond_5 : {}=N3 >/compound/ {}=N4 Action_1 : N0 >> arg1_gly >> N4 ####effect of glcnacylation 1 #### RuleID : role_glcnacylation_on_of Cond_1 : {word:/(.*glcnacylation)/}=N0 Cond_2 : {lemma:/(effect|influence)/} = N1 >/nmod:of/ {}=N0 Cond_3 : {}=N1 >/(nmod:on)/ {}=N2 Cond_4 : {}=N2 >/nmod:of/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####effect of glcnacylation 2 #### RuleID : effect glcnacylation_on_compound Cond_1 : {word:/(.*glcnacylation)/}=N0 Cond_2 : {lemma:/(effect|influence)/} = N1 >/nmod:of/ {}=N0 Cond_3 : {}=N1 >/(nmod:on)/ {}=N2 Cond_4 : {}=N2 >/compound/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####glcnacylation contributes to of #### RuleID : glcnacylation_contribute_to_of Cond_1 : {word:/(.*glcnacylation)/}=N0 Cond_2 : {lemma:/contribute/} = N1 >/nsubj/ {}=N0 Cond_3 : {}=N1 >/(nmod:to)/ {}=N2 Cond_4 : {}=N2 >/nmod:of/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####glcnacylation contribute to comp #### RuleID : glcnacylation_contributes to_compound Cond_1 : {word:/(.*glcnacylation)/}=N0 Cond_2 : {lemma:/contribute/} = N1 >/nsubj/ {}=N0 Cond_3 : {}=N1 >/(nmod:to)/ {}=N2 Cond_4 : {}=N2 >/compound/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####glcnacylation_crtical_for_of#### RuleID : glcnacylation_required_for_of Cond_1 : {word:/(.*glcnacylation)/}=N0 Cond_2 : {word:/(essential|critical|important)/} = N1 >/nsubj/ {}=N0 Cond_3 : {}=N1 >/(nmod:for)/ {}=N2 Cond_4 : {}=N2 >/nmod:of/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####glcnacylation_critical_for_of#### RuleID : glcnacylation_required_for_of Cond_1 : {word:/(.*glcnacylation)/}=N0 Cond_2 : {word:/(essential|critical|important)/} = N1 >/nsubj/ {}=N0 Cond_3 : {}=N1 >/(nmod:for)/ {}=N2 Cond_4 : {}=N2 >/compound/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####glcnacylation_required_for_of#### RuleID : glcnacylation_required_for_of Cond_1 : {word:/(.*glcnacylation)/}=N0 Cond_2 : {word:/(required)/} = N1 >/nsubjpass/ {}=N0 Cond_3 : {}=N1 >/(nmod:for)/ {}=N2 Cond_4 : {}=N2 >/nmod:of/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####glcnacylation_required_for_of#### RuleID : glcnacylation_required_for_of Cond_1 : {word:/(.*glcnacylation)/}=N0 Cond_2 : {word:/(required)/} = N1 >/nsubjpass/ {}=N0 Cond_3 : {}=N1 >/(nmod:for)/ {}=N2 Cond_4 : {}=N2 >/compound/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####glcnacylation_affects_of#### RuleID : glcnacylation_required_for_of Cond_1 : {word:/(.*glcnacylation)/}=N0 Cond_2 : {lemma:/(affect)/} = N1 >/nsubj/ {}=N0 Cond_3 : {}=N1 >/(dobj)/ {}=N2 Cond_4 : {}=N2 >/nmod:of/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####glcnacylation_affects_of#### RuleID : glcnacylation_required_for_of Cond_1 : {word:/(.*glcnacylation)/}=N0 Cond_2 : {lemma:/(affect)/} = N1 >/nsubj/ {}=N0 Cond_3 : {}=N1 >/(dobj)/ {}=N2 Cond_4 : {}=N2 >/compound/ {}=N3 Action_1 : N0 >> arg1_gly >> N3 ####Xs PTM#### RuleID : ptm_its_1 Cond_1 : {word:/(.*glcnacylation)/}=N0 Cond_2 : {}=N0 >/nmod:poss/ {}=N1 Action_1 : N0 >> arg0_ptm >> N1 ####detect glcnacylation in#### RuleID : detected_glcnacylation_in_1 Cond_1 : {word:/(.*glcnacylation)/}=N0 Cond_2 : {pos:/(VB.*)/}=N1 >/dobj/ {}=N0 Cond_3 : {}=N1 >/(nmod:in|nmod:at|nmod:on)/ {}=N2 Action_1 : N1 >> arg1_gly >> N2 ####glcnacylation was detected in#### RuleID : glcnacylation_was_detected_in_1 Cond_1 : {lemma:/(.*glcnacylation)/}=N0 Cond_2 : {pos:/(VB.*)/}=N1 >/nsubjpass/ {}=N0 Cond_3 : {}=N1 >/(nmod:in|nmod:at|nmod:on)/ {}=N2 Action_1 : N0 >> arg1_gly >> N2 ####glcnacylation in#### RuleID : glcnacylation_in_1 Cond_1 : {word:/(.*glcnacylation)/}=N0 Cond_2 : {}=N0 >/(nmod:in|nmod:at|nmod:on)/ {}=N1 Action_1 : N0 >> arg1_gly >> N1 ####undergo glcnacylation #### RuleID : undergo_glcnacylation_1 Cond_1 : {word:/(.*glcnacylation)/}=N0 Cond_2 : {lemma:/undergo|underwent/}=N1 >/(dobj)/ {}=N0 Cond_3 : {}=N1 >nsubj {}=N2 Action_1 : N0 >> arg1_gly >> N2 #### with glcnacylation #### RuleID : with glcnacylation_1 Cond_1 : {word:/(.*glcnacylation)/}=N0 Cond_2 : {pos:/NN.*/} = N1 >/nmod:with/ {}=N0 Action_1 : N0 >> arg1_gly >> N1 ####glcnacylation pattern of #### RuleID : glcnacylation_pattern_of_1 Cond_1 : {word:/(.*glcnacylation)/}=N0 Cond_2 : {lemma:/pattern|profile|state|status|analysis/} = N1 >/compound/ {}=N0 Cond_3 : {}=N1 >/(nmod:of)/ {}=N2 Action_1 : N0 >> arg1_gly >> N2 ####glcnacylation pattern at #### RuleID : glcnacylation_pattern_at_1 Cond_1 : {word:/(.*glcnacylation)/}=N0 Cond_2 : {lemma:/pattern|profile|state|status/} = N1 >/compound/ {}=N0 Cond_3 : {}=N1 >/(nmod:at)/ {}=N2 Action_1 : N0 >> arg2_gly >> N2 ####glcnacylation pattern of #### RuleID : glcnacylation_pattern_of_1 Cond_1 : {word:/(.*glcnacylation)/}=N0 Cond_2 : {word:/.*ogeneity/} = N1 >/compound/ {}=N0 Cond_3 : {}=N1 >/(nmod:of)/ {}=N2 Action_1 : N0 >> arg1_gly >> N2 ####glcnacylation heterogeneity at #### RuleID : glcnacylation_pattern_at_1 Cond_1 : {word:/(.*glcnacylation)/}=N0 Cond_2 : {word:/.*ogeneity/} = N1 >/compound/ {}=N0 Cond_3 : {}=N1 >/(nmod:at|nmod:in|nmod:on)/ {}=N2 Action_1 : N0 >> arg2_gly >> N2 ####glcnacylation of #### RuleID : glcnacylation_of_1 Cond_1 : {word:/(.*glcnacylation)/}=N0 Cond_2 : {}=N0 >/(nmod:of)/ {}=N1 Action_1 : N0 >> arg1_gly >> N1 ####site glcnacylation_1 #### RuleID : glcnacylation_sites Cond_1 : {word:/(.*glcnacylation)/}=N0 Cond_2 : {lemma:/site/}=N1 >/(compound)/ {}=N0 Action_1 : N0 >> arg2_gly >> N1 ####site glcnacylation_site_at_1 #### RuleID : glcnacylation_sites_at Cond_1 : {word:/(.*glcnacylation)/}=N0 Cond_2 : {lemma:/site/}=N1 >/(compound)/ {}=N0 Cond_3 : {}=N1 >/(nmod:at)/ {}=N2 Action_1 : N0 >> arg2_gly >> N2 ####sequon glcnacylation_1 #### RuleID : glcnacylation_sites Cond_1 : {word:/(.*glcnacylation)/}=N0 Cond_2 : {lemma:/sequon/}=N1 >/(compound)/ {}=N0 Action_1 : N0 >> arg2_gly >> N1 ####motif glcnacylation_1 #### RuleID : glcnacylation_sites Cond_1 : {word:/(.*glcnacylation)/}=N0 Cond_2 : {lemma:/motif/}=N1 >/(compound)/ {}=N0 Action_1 : N0 >> arg2_gly >> N1 ####glcnacylation_occurs_at### RuleID : glcnacylation_occurs_at Cond_1 : {word:/(.*glcnacylation)/}=N0 Cond_2 : {lemma:/occur/}=N1 >/nsubj/ {}=N0 Cond_3 : {}=N1 >/(nmod:in|nmod:on|nmod:at)/ {}=N2 Action_1 : N0 >> arg2_gly >> N2 #####file = others-ed ################# trigger as JJ/noun modifier ####fucosylated protein#### RuleID : fucosylated_amod_1 Cond_1 : {word:/(.*fucosylated)/}=N0 Cond_2 : {tag:/(NN|NNS)/}=N1 >/amod/ {}=N0 Action_1 : N0 >> arg1_gly >> N1 ####glyosylated form#### RuleID : fucosylated_form_1 Cond_1 : {word:/(.*fucosylated)/}=N0 Cond_2 : {word:/(.*form|.*forms)/}=N1 >/amod/ {}=N0 Cond_3 : {}=N1 >/nmod:of/ {tag:/(NN|NNS)/}=N2 Action_1 : N0 >> arg1_gly >> N2 ####protein o-fucosylated red rel#### RuleID : fucosylated_red_rel_1 Cond_1 : {pos:/JJ/;word:/(.*fucosylated)/}=N0 Cond_2 : {pos:/(NN|NNS)/}=N1 >/amod/ {}=N0 Action_1 : N0 >> arg1_gly >> N1 ################# passive ####protein was fucosylated #### RuleID : fucosylated_passive_1 Cond_1 : {pos:/VBN/;word:/(.*fucosylated)/}=N0 Cond_2 : {}=N0 >/nsubjpass/ {}=N1 Action_1 : N0 >> arg1_gly >> N1 ####protein was fucosylated #### RuleID : fucosylated_copular_1 Cond_1 : {word:/(.*fucosylated)/}=N0 Cond_2 : {}=N0 >/nsubj/ {}=N1 Cond_3 : {}=N0 >/cop/ {}=N2 Action_1 : N0 >> arg1_gly >> N1 ####protein o-fucosylated at red rel#### RuleID : fucosylated_red_rel_2 Cond_1 : {pos:/VBN/;word:/(.*fucosylated)/}=N0 Cond_2 : {pos:/(NN|NNS)/}=N1 >/(acl|dep)/ {}=N0 Action_1 : N0 >> arg1_gly >> N1 ####protein was fucosylated at site_1#### RuleID : fucosylated_passive_1 Cond_1 : {pos:/VBN/;word:/(.*fucosylated)/}=N0 Cond_2 : {}=N0 >/nmod:at/ {}=N1 Action_1 : N0 >> arg2_gly >> N1 ####protein was fucosylated at site_2#### RuleID : fucosylated_copular_1 Cond_1 : {pos:/JJ/;word:/(.*fucosylated)/}=N0 Cond_2 : {}=N0 >/nmod:at/ {}=N1 Action_1 : N0 >> arg2_gly >> N1 ################# active ####something fucosylated protein #### RuleID : fucosylated_VBD Cond_1 : {pos:/VBD/;word:/(.*fucosylated)/}=N0 Cond_2 : {}=N0 >/dobj/ {}=N1 Action_1 : N0 >> arg1_gly >> N1 ####something fucosylates protein #### RuleID : glycosylates_VBZ Cond_1 : {pos:/VBZ/;word:/(.*fucosylates)/}=N0 Cond_2 : {}=N0 >/dobj/ {}=N1 Action_1 : N0 >> arg1_gly >> N1 ####something was found to fucosylate protein #### RuleID : glycosylate_VB Cond_1 : {pos:/VB/;word:/(.*fucosylate)/}=N0 Cond_2 : {}=N0 >/dobj/ {}=N1 Action_1 : N0 >> arg1_gly >> N1 #### could we have fucosylated protein rule where there is compound and not amod? ################# trigger as JJ/noun modifier ####mannosylated protein#### RuleID : mannosylated_amod_1 Cond_1 : {word:/(.*mannosylated)/}=N0 Cond_2 : {tag:/(NN|NNS)/}=N1 >/amod/ {}=N0 Action_1 : N0 >> arg1_gly >> N1 ####glyosylated form#### RuleID : mannosylated_form_1 Cond_1 : {word:/(.*mannosylated)/}=N0 Cond_2 : {word:/(.*form|.*forms)/}=N1 >/amod/ {}=N0 Cond_3 : {}=N1 >/nmod:of/ {tag:/(NN|NNS)/}=N2 Action_1 : N0 >> arg1_gly >> N2 ####protein o-mannosylated red rel#### RuleID : mannosylated_red_rel_1 Cond_1 : {pos:/JJ/;word:/(.*mannosylated)/}=N0 Cond_2 : {pos:/(NN|NNS)/}=N1 >/amod/ {}=N0 Action_1 : N0 >> arg1_gly >> N1 ################# passive ####protein was mannosylated #### RuleID : mannosylated_passive_1 Cond_1 : {pos:/VBN/;word:/(.*mannosylated)/}=N0 Cond_2 : {}=N0 >/nsubjpass/ {}=N1 Action_1 : N0 >> arg1_gly >> N1 ####protein was mannosylated #### RuleID : mannosylated_copular_1 Cond_1 : {word:/(.*mannosylated)/}=N0 Cond_2 : {}=N0 >/nsubj/ {}=N1 Cond_3 : {}=N0 >/cop/ {}=N2 Action_1 : N0 >> arg1_gly >> N1 ####protein o-mannosylated at red rel#### RuleID : mannosylated_red_rel_2 Cond_1 : {pos:/VBN/;word:/(.*mannosylated)/}=N0 Cond_2 : {pos:/(NN|NNS)/}=N1 >/(acl|dep)/ {}=N0 Action_1 : N0 >> arg1_gly >> N1 ####protein was mannosylated at site_1#### RuleID : mannosylated_passive_1 Cond_1 : {pos:/VBN/;word:/(.*mannosylated)/}=N0 Cond_2 : {}=N0 >/nmod:at/ {}=N1 Action_1 : N0 >> arg2_gly >> N1 ####protein was mannosylated at site_2#### RuleID : mannosylated_copular_1 Cond_1 : {pos:/JJ/;word:/(.*mannosylated)/}=N0 Cond_2 : {}=N0 >/nmod:at/ {}=N1 Action_1 : N0 >> arg2_gly >> N1 ################# active ####something mannosylated protein #### RuleID : mannosylated_VBD Cond_1 : {pos:/VBD/;word:/(.*mannosylated)/}=N0 Cond_2 : {}=N0 >/dobj/ {}=N1 Action_1 : N0 >> arg1_gly >> N1 ####something mannosylates protein #### RuleID : glycosylates_VBZ Cond_1 : {pos:/VBZ/;word:/(.*mannosylates)/}=N0 Cond_2 : {}=N0 >/dobj/ {}=N1 Action_1 : N0 >> arg1_gly >> N1 ####something was found to mannosylate protein #### RuleID : glycosylate_VB Cond_1 : {pos:/VB/;word:/(.*mannosylate)/}=N0 Cond_2 : {}=N0 >/dobj/ {}=N1 Action_1 : N0 >> arg1_gly >> N1 #### could we have mannosylated protein rule where there is compound and not amod? ################# trigger as JJ/noun modifier ####sialylated protein#### RuleID : sialylated_amod_1 Cond_1 : {word:/(.*sialylated)/}=N0 Cond_2 : {tag:/(NN|NNS)/}=N1 >/amod/ {}=N0 Action_1 : N0 >> arg1_gly >> N1 ####glyosylated form#### RuleID : sialylated_form_1 Cond_1 : {word:/(.*sialylated)/}=N0 Cond_2 : {word:/(.*form|.*forms)/}=N1 >/amod/ {}=N0 Cond_3 : {}=N1 >/nmod:of/ {tag:/(NN|NNS)/}=N2 Action_1 : N0 >> arg1_gly >> N2 ####protein o-sialylated red rel#### RuleID : sialylated_red_rel_1 Cond_1 : {pos:/JJ/;word:/(.*sialylated)/}=N0 Cond_2 : {pos:/(NN|NNS)/}=N1 >/amod/ {}=N0 Action_1 : N0 >> arg1_gly >> N1 ################# passive ####protein was sialylated #### RuleID : sialylated_passive_1 Cond_1 : {pos:/VBN/;word:/(.*sialylated)/}=N0 Cond_2 : {}=N0 >/nsubjpass/ {}=N1 Action_1 : N0 >> arg1_gly >> N1 ####protein was sialylated #### RuleID : sialylated_copular_1 Cond_1 : {word:/(.*sialylated)/}=N0 Cond_2 : {}=N0 >/nsubj/ {}=N1 Cond_3 : {}=N0 >/cop/ {}=N2 Action_1 : N0 >> arg1_gly >> N1 ####protein o-sialylated at red rel#### RuleID : sialylated_red_rel_2 Cond_1 : {pos:/VBN/;word:/(.*sialylated)/}=N0 Cond_2 : {pos:/(NN|NNS)/}=N1 >/(acl|dep)/ {}=N0 Action_1 : N0 >> arg1_gly >> N1 ####protein was sialylated at site_1#### RuleID : sialylated_passive_1 Cond_1 : {pos:/VBN/;word:/(.*sialylated)/}=N0 Cond_2 : {}=N0 >/nmod:at/ {}=N1 Action_1 : N0 >> arg2_gly >> N1 ####protein was sialylated at site_2#### RuleID : sialylated_copular_1 Cond_1 : {pos:/JJ/;word:/(.*sialylated)/}=N0 Cond_2 : {}=N0 >/nmod:at/ {}=N1 Action_1 : N0 >> arg2_gly >> N1 ################# active ####something sialylated protein #### RuleID : sialylated_VBD Cond_1 : {pos:/VBD/;word:/(.*sialylated)/}=N0 Cond_2 : {}=N0 >/dobj/ {}=N1 Action_1 : N0 >> arg1_gly >> N1 ####something sialylates protein #### RuleID : glycosylates_VBZ Cond_1 : {pos:/VBZ/;word:/(.*sialylates)/}=N0 Cond_2 : {}=N0 >/dobj/ {}=N1 Action_1 : N0 >> arg1_gly >> N1 ####something was found to sialylate protein #### RuleID : glycosylate_VB Cond_1 : {pos:/VB/;word:/(.*sialylate)/}=N0 Cond_2 : {}=N0 >/dobj/ {}=N1 Action_1 : N0 >> arg1_gly >> N1 #### could we have sialylated protein rule where there is compound and not amod? #####file = theme-from-with ####themeNoun_1### RuleID : compound_1 Cond_1 : {pos:/(NN|NNS)/}=N0 >/compound/ {}=N1 Action_1 : N1 >> arg1_theme >> N0 ####themeNoun_2### RuleID : compound_1 Cond_1 : {pos:/(NN|NNS|CD)/}=N0 >/nmod:(of|inofdiff)/ {}=N1 Action_1 : N1 >> arg1_theme >> N0 ####themeJJNoun_1### RuleID : compound_1 Cond_1 : {pos:/(NN|NNS)/}=N0 >/amod/ {}=N1 Action_1 : N1 >> arg1_theme >> N0 ####themeJJNoun_2### RuleID : compound_1 Cond_1 : {pos:/(JJ)/}=N0 >/nmod:(of|inofdiff)/ {}=N1 Action_1 : N1 >> arg1_theme >> N0 ############################################### ####fromNoun### RuleID : nmod_from_1 Cond_1 : {pos:/(NN|NNS)/}=N0 >/nmod:(from|ofindiff|inatdiff)/ {}=N1 Action_1 : N1 >> arg1_from >> N0 ####atNoun### RuleID : nmod_at_1 Cond_1 : {pos:/(NN|NNS|CD)/}=N0 >/nmod:(at|ofindiff|inatdiff)/ {}=N1 Action_1 : N1 >> arg1_from >> N0 ####in/Noun### RuleID : nmod_in_1 Cond_1 : {pos:/(NN|NNS|CD)/}=N0 >/nmod:(in|ofindiff|inatdiff)/ {}=N1 Action_1 : N0 >> arg1_from >> N1 ####on/Noun### RuleID : nmod_in_1 Cond_1 : {pos:/(NN|NNS|CD)/}=N0 >/nmod:(on|ofindiff|inatdiff)/ {}=N1 Action_1 : N0 >> arg1_from >> N1 ####JJfromNoun### RuleID : jjnmodfrom_1 Cond_1 : {pos:/(JJ)/}=N0 >/nmod:(from|ofindiff|inatdiff)/ {}=N1 Action_1 : N1 >> arg1_from >> N0 ####JJOnNoun### ####RuleID : jjnmodon_1 #####Cond_1 : {pos:/(JJ)/}=N0 >/nmod:(on|ofindiff|inatdiff)/ {}=N1 #####Action_1 : N1 >> arg1_from >> N0 ####JJInNoun### RuleID : jjnmodin_1 Cond_1 : {pos:/(JJ)/}=N0 >/nmod:(in|ofindiff|inatdiff)/ {}=N1 Action_1 : N1 >> arg1_from >> N0 ####JJatNoun### RuleID : compound_1 Cond_1 : {pos:/(JJ)/}=N0 >/nmod:(at|ofindiff|inatdiff)/ {}=N1 Action_1 : N1 >> arg1_from >> N0 ####JJinNoun### RuleID : compound_1 Cond_1 : {pos:/(JJ)/}=N0 >/nmod:in/ {}=N1 Action_1 : N0 >> arg1_from >> N1 ####withNoun### RuleID : compound_1 Cond_1 : {pos:/(NN|NNS)/}=N0 >/nmod:with/ {}=N1 Action_1 : N0 >> arg1_with >> N1 ####JJwithNoun### RuleID : compound_1 Cond_1 : {pos:/(JJ)/}=N0 >/nmod:with/ {}=N1 Action_1 : N0 >> arg1_with >> N1 ####dep rule #### RuleID : dep_rule Cond_1 : {}=N0 >/dep/ {}=N1 Action_1 : N0 >> arg1_dep >> N1 #####file = gly-ing #### Y(agent) did something to X by glycosylating### #### X was done by glycosylating ### ####protein o-glycosylating protein #### RuleID : glycosylating_enzyme Cond_1 : {word:/(.*glycosylating)/}=N0 Cond_2 : {pos:/(NN|NNS)/}=N1 >/amod/ {}=N0 Action_1 : N0 >> arg0_gly >> N1 ####phase = 3 #####file = prop_isa_to_quant RuleID : prop_quantifier_arg_1 Cond_0 : {}=N0 >/arg.*/=R1 {}=N1 Cond_1 : {}=N1 >quantifier_of {}=N2 Action_1 : N0 >> R1_prop_quant_of >> N2 RuleID : prop_quantifier_arg_1 Cond_0 : {}=N0 >/arg.*/=R1 {}=N1 Cond_1 : {}=N1 >group_of {}=N2 Action_1 : N0 >> R1_prop_group_of >> N2 RuleID : prop_isa_arg_2 Cond_0 : {}=N0 >/arg.*/=R1 {}=N1 Cond_1 : {}=N1 >is_a {}=N2 Action_1 : N0 >> R1_prop_isa >> N2 RuleID : prop_isa_arg_1 Cond_0 : {}=N0 >/arg.*/=R1 {}=N1 Cond_1 : {}=N1 > R1_prop_isa >> N2 RuleID : prop_mc_arg Cond_0 : {}=N0 >/arg.*/=R1 {}=N1 Cond_1 : {}=N1 >member_collection {}=N2 Action_1 : N0 >> R1_prop_mc >> N2 #RuleID : prop_mc_any #Cond_1 : {}=N1 >member_collection {}=N2 #Cond_0 : {}=N0 >=R1 {}=N1 #Action_1 : N0 >> R1_prop_mc >> N2 RuleID : prop_part_whole_arg_1 Cond_0 : {}=N0 >/arg.*/=R1 {}=N1 Cond_1 : {}=N1 >part_whole {}=N2 Action_1 : N0 >> R1_prop_part_whole >> N2 RuleID : prop_quantifier_arg_1 Cond_0 : {}=N0 >/arg.*/=R1 {}=N1 Cond_1 : {}=N1 >quantifier_of {}=N2 Action_1 : N0 >> R1_prop_quant_of >> N2 RuleID : prop_quantifier_arg_1 Cond_0 : {}=N0 >/arg.*/=R1 {}=N1 Cond_1 : {}=N1 >group_of {}=N2 Action_1 : N0 >> R1_prop_group_of >> N2