GlyGen Protein Dataset Release 2023_02
======================================
UniProt release: 03-May-2023
GlyGen dataset : 12-May-2023

* uniprot-proteome-homo-sapiens.nt.gz
* uniprot-proteome-mus-musculus.nt.gz
* uniprot-proteome-rattus-norvegicus.nt.gz
* uniprot-proteome-drosophila-melanogaster.nt.gz
* uniprot-proteome-saccharomyces-cerevisiae.nt.gz
* uniprot-proteome-dictyostelium-discoideum.nt.gz
* uniprot-proteome-hepatitis-c-virus-1a.nt.gz
* uniprot-proteome-hepatitis-c-virus-1b.nt.gz
* uniprot-proteome-human-sars-coronavirus.nt.gz
* uniprot-proteome-sars-cov-2.nt.gz


Changes in this release:
------------------------
-

Homo Sapiens Dataset inputs:
> Homo_sapiens.GRCh38.cds.all.fa from http://ftp.ensembl.org/pub/current_fasta/homo_sapiens/cds
> UP000005640_9606_uniprot_proteome.rdf using UniProt website REST API in May 2023
> UP000005640_9606.coordinates.json using Proteins REST API in May 2023
> Isoform info using UniProt Java API in May 2023
> UP000005640_9606.fasta from UniProt Release 2023_02
> UP000005640_9606_additional.fasta from UniProt Release 2023_02


Mus Musculus Dataset inputs:
> Mus_musculus.GRCm39.cds.all.fa from http://ftp.ensembl.org/pub/current_fasta/mus_musculus/cds
> UP000000589_10090_uniprot_proteome.rdf using UniProt website REST API in May 2023
> UP000000589_10090.coordinates.json using Proteins REST API in May 2023
> Isoform info using UniProt Java API in May 2023
> UP000000589_10090.fasta from UniProt Release 2023_02
> UP000000589_10090_additional.fasta from UniProt Release 2023_02


Rattus Norvegicus Dataset inputs:
> Rattus_norvegicus.mRatBN7.2.cds.all.fa from http://ftp.ensembl.org/pub/current_fasta/rattus_norvegicus/cds
> UP000002494_10116_uniprot_proteome.rdf using UniProt website REST API in May 2023
> UP000002494_10116.coordinates.json using Proteins REST API in May 2023
> Isoform info using UniProt Java API in May 2023
> UP000002494_10116.fasta from UniProt Release 2023_02
> UP000002494_10116_additional.fasta from UniProt Release 2023_02


Drosophila Melanogaster Dataset inputs:
> Drosophila_melanogaster.BDGP6.32.cds.all.fa from http://ftp.ensembl.org/pub/current_fasta/drosophila_melanogaster/cds/
> UP000000803_7227_uniprot_proteome.rdf using UniProt website REST API in May 2023
> UP000000803_7227.coordinates.json using Proteins REST API in May 2023
> Isoform info using UniProt Java API in May 2023
> UP000000803_7227.fasta from UniProt Release 2023_02
> UP000000803_7227_additional.fasta from UniProt Release 2023_02


Saccharomyces Cerevisiae Dataset inputs:
> Saccharomyces_cerevisiae.R64-1-1.cds.all.fa from https://ftp.ensembl.org/pub/current_fasta/saccharomyces_cerevisiae/cds/
> UP000002311_559292_uniprot_proteome.rdf using UniProt website REST API in May 2023
> UP000002311_559292.coordinates.json using Proteins REST API in May 2023
> Isoform info using UniProt Java API in May 2023
> UP000002311_559292.fasta from UniProt Release 2023_02
> UP000002311_559292_additional.fasta from UniProt Release 2023_02


Dictyostelium Discoideum Dataset inputs:
> Dictyostelium_discoideum.dicty_2.7.cds.all.fa from https://ftp.ensemblgenomes.ebi.ac.uk/pub/protists/current/fasta/dictyostelium_discoideum/cds/
> UP000002195_44689_uniprot_proteome.rdf using UniProt website REST API in May 2023
> UP000002195_44689.coordinates.json using Proteins REST API in May 2023
> Isoform info using UniProt Java API in May 2023
> UP000002195_44689.fasta from UniProt Release 2023_02
> UP000002195_44689_additional.fasta from UniProt Release 2023_02


Hepatitis C Virus Genotype 1a Dataset inputs:
> UP000000518_63746_uniprot_proteome.rdf using UniProt website REST API in May 2023
> Isoform info using UniProt Java API in May 2023
> UP000000518_63746.fasta from UniProt Release 2023_02


Hepatitis C Virus Genotype 1b Dataset inputs:
> UP000008095_11116_uniprot_proteome.rdf using UniProt website REST API in May 2023
> Isoform info using UniProt Java API in May 2023
> UP000008095_11116.fasta from UniProt website in May 2023


Human SARS coronavirus Dataset inputs:
> UP000000354_694009_uniprot_proteome.rdf using UniProt website REST API in May 2023
> Isoform info using UniProt Java API in May 2023
> UP000000354_694009.fasta from UniProt Release 2023_02


SARS CoV 2 Dataset inputs:
> UniProt pre_release data in May 2023 - https://ftp.uniprot.org/pub/databases/uniprot/pre_release


Reaction info from Reactome:
> GraphDB v84 - https://reactome.org/download/current/reactome.graphdb.tgz 
> UniProt to All reactions mapping - https://reactome.org/download/current/UniProt2ReactomeReactions.txt


Rhea info from ftp://ftp.ebi.ac.uk/pub/databases/rhea/rdf/rhea.rdf.gz


Common UniProt Supporting Datasets (2023_02):
> databases.rdf.xz   Databases that are linked to from uniprot.rdf.xz
> diseases.rdf.xz    Human diseases
> enzyme.rdf.xz      Enzyme classification
> go.owl.xz          Gene Ontology
> keywords.rdf.xz    Keywords
> locations.rdf.xz   Subcellular locations
> tissues.rdf.xz     Tissues