ID A0A580_HUMAN Unreviewed; 114 AA. AC A0A580; DT 28-NOV-2006, integrated into UniProtKB/TrEMBL. DT 28-NOV-2006, sequence version 1. DT 13-FEB-2019, entry version 70. DE SubName: Full=T cell receptor beta variable 9 {ECO:0000313|Ensembl:ENSP00000488515}; DE SubName: Full=V_segment translation product {ECO:0000313|EMBL:AAC80194.1}; DE Flags: Fragment; GN Name=TRBV9 {ECO:0000313|Ensembl:ENSP00000488515}; GN Synonyms=TCRBV1S1A1N1 {ECO:0000313|EMBL:AAC80194.1}; OS Homo sapiens (Human). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; OC Catarrhini; Hominidae; Homo. OX NCBI_TaxID=9606 {ECO:0000313|EMBL:AAC80194.1}; RN [1] {ECO:0000313|EMBL:AAC80194.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=8020962; DOI=10.1006/geno.1994.1149; RA Slightom J.L., Siemieniak D.R., Sieu L.C., Koop B.F., Hood L.; RT "Nucleotide sequence analysis of 77.7 kb of the human V beta T-cell RT receptor gene locus: direct primer-walking using cosmid template RT DNAs."; RL Genomics 20:149-168(1994). RN [2] {ECO:0000313|EMBL:AAC80194.1} RP NUCLEOTIDE SEQUENCE. RX PubMed=8650574; DOI=10.1126/science.272.5269.1755; RA Rowen L., Koop B.F., Hood L.; RT "The complete 685-kilobase DNA sequence of the human beta T cell RT receptor locus."; RL Science 272:1755-1762(1996). RN [3] {ECO:0000313|EMBL:AAC80194.1} RP NUCLEOTIDE SEQUENCE. RA Rowen L., Seto J., Smit A., Acharya C., Ahearn M.E., Ankener M., RA Baskin D., Bumgarner R., Chen L., Chen N., Deshpande P., Faust J., RA Howard S., Jerome N., Koop B.F., Lee H., Loretz C., Paeper B., RA Zackrone K., Hood L.; RT "Sequence determination of the human T cell receptor beta locus: RT Strategy and error analysis."; RL Submitted (JUN-1997) to the EMBL/GenBank/DDBJ databases. RN [4] {ECO:0000313|EMBL:AAC80194.1} RP NUCLEOTIDE SEQUENCE. RA Rowen L., Wang K., Boysen C., Ahearn M.E., Charmley P., Paeper B., RA Lee I., Chen L., Trask B., Nickerson D., Seto D., Hood L.; RT "Sequence variation among several haplotypes in the human T cell RT receptor beta locus."; RL Submitted (JUN-1997) to the EMBL/GenBank/DDBJ databases. RN [5] {ECO:0000313|Ensembl:ENSP00000488515, ECO:0000313|Proteomes:UP000005640} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=12853948; DOI=10.1038/nature01782; RA Hillier L.W., Fulton R.S., Fulton L.A., Graves T.A., Pepin K.H., RA Wagner-McPherson C., Layman D., Maas J., Jaeger S., Walker R., RA Wylie K., Sekhon M., Becker M.C., O'Laughlin M.D., Schaller M.E., RA Fewell G.A., Delehaunty K.D., Miner T.L., Nash W.E., Cordes M., Du H., RA Sun H., Edwards J., Bradshaw-Cordum H., Ali J., Andrews S., Isak A., RA Vanbrunt A., Nguyen C., Du F., Lamar B., Courtney L., Kalicki J., RA Ozersky P., Bielicki L., Scott K., Holmes A., Harkins R., Harris A., RA Strong C.M., Hou S., Tomlinson C., Dauphin-Kohlberg S., RA Kozlowicz-Reilly A., Leonard S., Rohlfing T., Rock S.M., RA Tin-Wollam A.-M., Abbott A., Minx P., Maupin R., Strowmatt C., RA Latreille P., Miller N., Johnson D., Murray J., Woessner J.P., RA Wendl M.C., Yang S.-P., Schultz B.R., Wallis J.W., Spieth J., RA Bieri T.A., Nelson J.O., Berkowicz N., Wohldmann P.E., Cook L.L., RA Hickenbotham M.T., Eldred J., Williams D., Bedell J.A., Mardis E.R., RA Clifton S.W., Chissoe S.L., Marra M.A., Raymond C., Haugen E., RA Gillett W., Zhou Y., James R., Phelps K., Iadanoto S., Bubb K., RA Simms E., Levy R., Clendenning J., Kaul R., Kent W.J., Furey T.S., RA Baertsch R.A., Brent M.R., Keibler E., Flicek P., Bork P., Suyama M., RA Bailey J.A., Portnoy M.E., Torrents D., Chinwalla A.T., Gish W.R., RA Eddy S.R., McPherson J.D., Olson M.V., Eichler E.E., Green E.D., RA Waterston R.H., Wilson R.K.; RT "The DNA sequence of human chromosome 7."; RL Nature 424:157-164(2003). RN [6] {ECO:0000313|Ensembl:ENSP00000488515} RP IDENTIFICATION. RG Ensembl; RL Submitted (AUG-2015) to UniProtKB. RN [7] {ECO:0000213|PDB:5KS9, ECO:0000213|PDB:5KSA, ECO:0000213|PDB:5KSB} RP X-RAY CRYSTALLOGRAPHY (2.00 ANGSTROMS) OF 22-114, AND DISULFIDE BONDS. RX PubMed=27568928; DOI=10.1016/j.str.2016.07.010; RA Petersen J., Kooy-Winkelaar Y., Loh K.L., Tran M., van Bergen J., RA Koning F., Rossjohn J., Reid H.H.; RT "Diverse T cell receptor gene usage in HLA-DQ8-associated celiac RT disease converges into a consensus binding solution."; RL Structure 24:1643-1657(2016). CC ----------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC ----------------------------------------------------------------------- DR EMBL; AC234635; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; L36092; AAC80194.1; -; Genomic_DNA. DR PDB; 5KS9; X-ray; 2.55 A; F/H=22-114. DR PDB; 5KSA; X-ray; 2.00 A; D=22-114. DR PDB; 5KSB; X-ray; 2.90 A; F/H=22-113. DR PDBsum; 5KS9; -. DR PDBsum; 5KSA; -. DR PDBsum; 5KSB; -. DR SMR; A0A580; -. DR BioMuta; TRBV9; -. DR PRIDE; A0A580; -. DR Ensembl; ENST00000633328; ENSP00000488515; ENSG00000282204. DR HGNC; HGNC:12246; TRBV9. DR HOGENOM; HOG000168489; -. DR HOVERGEN; HBG100543; -. DR Proteomes; UP000005640; Chromosome 7. DR Gene3D; 2.60.40.10; -; 1. DR InterPro; IPR007110; Ig-like_dom. DR InterPro; IPR036179; Ig-like_dom_sf. DR InterPro; IPR013783; Ig-like_fold. DR InterPro; IPR013106; Ig_V-set. DR Pfam; PF07686; V-set; 1. DR SMART; SM00406; IGv; 1. DR SUPFAM; SSF48726; SSF48726; 1. DR PROSITE; PS50835; IG_LIKE; 1. PE 1: Evidence at protein level; KW 3D-structure {ECO:0000213|PDB:5KS9, ECO:0000213|PDB:5KSA, KW ECO:0000213|PDB:5KSB}; KW Complete proteome {ECO:0000313|Proteomes:UP000005640}; KW Reference proteome {ECO:0000313|Proteomes:UP000005640}; KW Signal {ECO:0000256|SAM:SignalP}. FT SIGNAL 1 21 {ECO:0000256|SAM:SignalP}. FT CHAIN 22 114 {ECO:0000256|SAM:SignalP}. FT /FTId=PRO_5014564937. FT DOMAIN 18 114 Ig-like. {ECO:0000259|PROSITE:PS50835}. FT DISULFID 42 110 {ECO:0000213|PDB:5KS9, FT ECO:0000213|PDB:5KSA, FT ECO:0000213|PDB:5KSB}. FT NON_TER 114 114 {ECO:0000313|EMBL:AAC80194.1, FT ECO:0000313|Ensembl:ENSP00000488515}. SQ SEQUENCE 114 AA; 12599 MW; 5861B9A6F3087FD4 CRC64; MGFRLLCCVA FCLLGAGPVD SGVTQTPKHL ITATGQRVTL RCSPRSGDLS VYWYQQSLDQ GLQFLIQYYN GEERAKGNIL ERFSAQQFPD LHSELNLSSL ELGDSALYFC ASSV //