#!/bin/bash  

# define resource
resource=ebi

# add the time stamped folder
cd /data/projects/glygen/downloads/$resource/

new_dir=$(date +%Y_%m_%d)/
mkdir $new_dir

# download files to new folder
cd /data/projects/glygen/downloads/$resource/$new_dir

wget -q ftp://ftp.ebi.ac.uk/pub/contrib/glygen/current_release/* &

wait # wait until all downloads are complete
echo "Download completed, unzipping files..."

# unzip the downloaded folder
gunzip *.gz
echo "Unzipping completed, changing folder permissions and creating softlinks..."

# update new folder permissions
chmod -R 775 /data/shared/glygen/downloads/$resource/$new_dir/

# create symbolic links to the files according to species
cd /data/projects/glygen/downloads/$resource/
rm current
ln -s $new_dir current

echo "Download is ready, process completed."