Overview Daigram

Data model represents the logical structure of data integration in GlyGen. It provides the definition, structure and format of the data stored and used in GlyGen database. The data is divided into three main categories: Protein, Proteoform and Glycan. These categories are represented as the main cores in the data model and their integration is described through a collection of predicates over a finite set of predicate variables. This network can be viewed in the overview diagram represented below.

Namespaces

up: http://www.uniprot.org/core/ rdf: http://www.w3.org/1999/02/22-rdf-syntax-ns rdfs: http://www.w3.org/2000/01/rdf-schema skos: http://www.w3.org/2004/02/skos/core faldo: http://biohackathon.org/resource/faldo ens: http://rdf.ebi.ac.uk/resource/ensembl gco: http://purl.jp/bio/12/glyco/conjugate gly: http://glygen-vm-prd.biochemistry.gwu.edu/ontology/

Graph nodes and edges

This table provides the definition and constraints for each field name stored in GlyGen. It also describes the structure of the individual field names in the data model by describing its domain, range and predicate.