GlyGen Organism Decisions 1) Organisms and names need to be approved by Raja and Mike before they are added to GlyGen. TaxID: The taxonomy identifier from NCBI Taxonomy Scientific Name: The full scientific name according to NCBI Taxonomy Common Name: The common name according to UniProt Taxonomy GlyGen Name: The organism name displayed in GlyGen searches, statistics, etc. 2) Organisms which are not GlyGen reference organisms These taxonomies are grouped with "nearest" GlyGen reference species. The mapping file is located at misc/species_map.json and needs to be updated if a new organism that is not reference Glygen organism 3) The "statistics" panel given on the landing page should only show GlyGen reference organism using the "GlyGen Name" 4) All pulldown menu should show only GlyGen reference organism using the "GlyGen Name" 5) All search result pages (protein/glycan/xxx search result pages) should show only GlyGen reference organism using the "GlyGen Name" 6) All detail pages (protein/glycan/xxx detail pages) should show only GlyGen reference organism using the "GlyGen Name" 7) Because there are two reference HCV strains, the parent HCV species is not mapped to either. It appears as its own organism on the glycan search species dropdown, list filters and details organism section. 8) Deal with common names on a case by case basis, especially in instances where a common name isn't assigned in UniProt. 9) When making glycan_species.csv dataset, remove tax id’s that are not GlyGen ref id’s or collapsed id’s (refer to generated/misc/species_map.json), with the exception of HCV (11103 and 3052230). 10) Keep HCV filter search results separate such that HCV and HCV-H77 do not display their combined result counts.