{
    "bcoid": "GLY_001459",
    "title": "Human Protein Citations (RCSB PDB)",
    "description": "The Human Protein Citations (RCSB PDB) dataset contains Homo sapiens [taxid:9606] UniProtKB accessions ...",
    "filename_list": "human_proteoform_citations_glycosylation_sites_rcsb_pdb.csv",
    "filename": "human_proteoform_citations_glycosylation_sites_rcsb_pdb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Homo sapiens"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P13671-1...",
                "Structure of..."
            ],
            [
                "Q76LX8-1...",
                "Crystal stru..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                }
            ],
            [
                "P13671-1",
                "Structure of complement C6 suggests a mechanism for initiation and unidirectional, sequential assembly of membrane attack complex (MAC).",
                "The Journal of biological chemistry",
                "2012 Mar 23",
                "Aleshin AE, Schraufstatter IU, Stec B, Bankston LA, Liddington RC, DiScipio RG",
                "protein_xref_pubmed",
                "22267737",
                "protein_xref_pdb4glycans",
                "3T5O",
                "G36855WW"
            ],
            [
                "Q76LX8-1",
                "Crystal structure and enzymatic activity of an ADAMTS-13 mutant with the East Asian-specific P475S polymorphism.",
                "Journal of thrombosis and haemostasis : JTH",
                "2013-07",
                "Akiyama M, Nakayama D, Takeda S, Kokame K, Takagi J, Miyata T",
                "protein_xref_pubmed",
                "23621748",
                "protein_xref_pdb4glycans",
                "3VN4",
                "G36855WW"
            ]
        ]
    },
    "readme": "Name\n   - Human Protein Citations (RCSB PDB)\n\nVersion\n   - v-2.9.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu], Mariia Kim [maria.kim@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Human Protein Citations (RCSB PDB) dataset contains Homo sapiens [taxid:9606] UniProtKB accessions mapped to publication information (PMID, title, journal name, publication, date, authors) and the corresponding RCSB PDB ID and GlyTouCan IDs from file https://data.glygen.org/GLY_001412. If you use this dataset provide proper attribution to RCSB PDB and GlyGen.\n   - RCSB PDB (https://www.rcsb.org) is the US data center for the global Protein Data Bank (PDB) archive of 3D structure data for large biological molecules.\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - PubMed\n   - RCSB PDB\n\n   Pipeline Steps\n   - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/compiled/all_blacklisted_pmids.csv\n      Name: doi_citations.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/compiled/doi_citations.csv\n      Name: human_proteoform_glycosylation_sites_rcsb_pdb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_proteoform_glycosylation_sites_rcsb_pdb.csv\n   Output Subdomain\n      Name: human_proteoform_citations_glycosylation_sites_rcsb_pdb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_proteoform_citations_glycosylation_sites_rcsb_pdb.csv\n      Name: human_proteoform_citations_glycosylation_sites_rcsb_pdb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_proteoform_citations_glycosylation_sites_rcsb_pdb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"204\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"483\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"110\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"450\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"481\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"483\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"555\"\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"127\"",
    "downloadurl": "/ln2data/releases/data/v-2.9.1/reviewed/human_proteoform_citations_glycosylation_sites_rcsb_pdb.csv"
}