{
    "bcoid": "GLY_001456",
    "title": "Zebrafish Glycan GlycomeAtlas Citations",
    "description": "The Zebrafish Glycan GlycomeAtlas Citations dataset comprises zebrafish [TaxID: 7955] tissue glycan citation ...",
    "filename_list": "zebrafish_proteoform_citations_glycosylation_sites_glycomeatlas.csv",
    "filename": "zebrafish_proteoform_citations_glycosylation_sites_glycomeatlas.csv",
    "filetype": "csv",
    "categories": {
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "GlycomeAtlas Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "species": [
            "Danio rerio"
        ]
    },
    "minitable": {
        "content": [
            [
                "...",
                "Systems glyc..."
            ],
            [
                "...",
                "Systems glyc..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                }
            ],
            [
                "",
                "Systems glycomics of adult zebrafish identifies organ-specific sialylation and glycosylation patterns",
                "Nature Portfolio",
                "2018",
                "Nao Yamakawa, Jorick Vanbeselaere, Lan-Yi Chang, Shin-Yi Yu, Lucie Ducrocq, Anne Harduin-Lepers, Junichi Kurata, Kiyoko F Aoki-Kinoshita, Chihiro Sato, Kay-Hooi Khoo, Ken Kitajima, Yann Guerardel",
                "glycan_xref_doi",
                "10.1038/s41467-018-06950-3",
                "glycan_xref_glycomeatlas",
                "G00211WY",
                "G00211WY"
            ],
            [
                "",
                "Systems glycomics of adult zebrafish identifies organ-specific sialylation and glycosylation patterns",
                "Nature Portfolio",
                "2018",
                "Nao Yamakawa, Jorick Vanbeselaere, Lan-Yi Chang, Shin-Yi Yu, Lucie Ducrocq, Anne Harduin-Lepers, Junichi Kurata, Kiyoko F Aoki-Kinoshita, Chihiro Sato, Kay-Hooi Khoo, Ken Kitajima, Yann Guerardel",
                "glycan_xref_doi",
                "10.1038/s41467-018-06950-3",
                "glycan_xref_glycomeatlas",
                "G00650AC",
                "G00650AC"
            ]
        ]
    },
    "readme": "Name\n   - Zebrafish Glycan GlycomeAtlas Citations\n\nVersion\n   - v-2.9.1\n\nCreated on\n  - 2023-03-14T20:00:08.127Z\n\nModified on\n   - 2025-03-04T15:53:49.509Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Zebrafish Glycan GlycomeAtlas Citations dataset comprises zebrafish [TaxID: 7955] tissue glycan citation information for Danio rerio. This data is provided by the GlycomeAtlas from GlyCosmos which provides comprehensive information on glycan structures catalogued from various publications. More information can be found here: https://glycosmos.org/glycomeatlas.\n\nDescription Domain\n   Keywords\n   - GlycomeAtlas\n   - glycan\n   - proteoform\n\n   Pipeline Steps\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/compiled/all_blacklisted_pmids.csv\n      Name: doi_citations.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/compiled/doi_citations.csv\n      Name: zebrafish_proteoform_glycosylation_sites_glycomeatlas.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/zebrafish_proteoform_glycosylation_sites_glycomeatlas.csv\n   Output Subdomain\n      Name: zebrafish_proteoform_citations_glycosylation_sites_glycomeatlas.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/zebrafish_proteoform_citations_glycosylation_sites_glycomeatlas.csv\n      Name: zebrafish_proteoform_citations_glycosylation_sites_glycomeatlas.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/zebrafish_proteoform_citations_glycosylation_sites_glycomeatlas.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"1\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"1\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"1\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"1\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"1\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"1\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"117\"\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"117\"",
    "downloadurl": "/ln2data/releases/data/v-2.9.1/reviewed/zebrafish_proteoform_citations_glycosylation_sites_glycomeatlas.csv"
}