{
    "bcoid": "GLY_001443",
    "title": "Fruit fly Protein Citations (IEDB)",
    "description": "The Fruit fly Protein Citations (IEDB) dataset contains Drosophila melanogaster [taxid:7227] UniProtKB ...",
    "filename_list": "fruitfly_protein_citations_iedb.csv",
    "filename": "fruitfly_protein_citations_iedb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Drosophila melanogaster"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q4AB54-1...",
                "Bands, inter..."
            ],
            [
                "P08928-1...",
                "Interphase p..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "Q4AB54-1",
                "Bands, interbands and puffs in native Drosophila polytene chromosomes are recognized by a monoclonal antibody to an epitope in the carboxy-terminal tail of histone H1.",
                "Chromosoma",
                "1989-12",
                "Hill R J, Watt F, Wilson C M, Fifis T, Underwood P A, Tribbick G, Geysen H M, Thomas J O",
                "protein_xref_pubmed",
                "2483366",
                "protein_xref_iedb",
                "2267098"
            ],
            [
                "P08928-1",
                "Interphase phosphorylation of the Drosophila nuclear lamin: site-mapping using a monoclonal antibody.",
                "Journal of cell science",
                "1995 Sep",
                "Stuurman N, Maus N, Fisher PA",
                "protein_xref_pubmed",
                "8537453",
                "protein_xref_iedb",
                "565172"
            ]
        ]
    },
    "readme": "Name\n   - Fruit fly Protein Citations (IEDB)\n\nVersion\n   - v-2.9.1\n\nModified on\n   - 2025-07-30T15:32:29.285Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu], Mariia Kim [maria.kim@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Fruit fly Protein Citations (IEDB) dataset contains Drosophila melanogaster [taxid:7227] UniProtKB accessions mapped to publication information (PMID, title, journal name, publication, date, authors, and the corresponding IEDB accession). If you use this dataset provide proper attribution to IEDB, GlyGen and EBI-EMBL-UniProtKB.\n   - The Immune Epitope Database (IEDB) catalogs experimental data on antibody and T cell epitopes in the context of infectious disease, allergy, autoimmunity and transplantation.\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - PubMed\n   - IEDB\n\n   Pipeline Steps\n   - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: fruitfly_protein_iedb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/fruitfly_protein_iedb.csv\n   Output Subdomain\n      Name: fruitfly_protein_citations_iedb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/fruitfly_protein_citations_iedb.csv\n      Name: fruitfly_protein_citations_iedb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/fruitfly_protein_citations_iedb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"11\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"8\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"8\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"8\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"8\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"8\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"13\"",
    "downloadurl": "/ln2data/releases/data/v-2.9.1/reviewed/fruitfly_protein_citations_iedb.csv"
}