{
    "bcoid": "GLY_001437",
    "title": "Zebrafish Protein Citations (IEDB)",
    "description": "The Zebrafish Protein Citations (IEDB) dataset contains Danio rerio [taxid:7955] UniProtKB accessions ...",
    "filename_list": "zebrafish_protein_citations_iedb.csv",
    "filename": "zebrafish_protein_citations_iedb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Danio rerio"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q8UW07-1...",
                "Development ..."
            ],
            [
                "O73784-1...",
                "Antibody Bin..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "Q8UW07-1",
                "Development and Applications of a Zebrafish (Danio rerio) CYP1A-Targeted Monoclonal Antibody (CRC4) with Reactivity across Vertebrate Taxa: Evidence for a Conserved CYP1A Epitope.",
                "Toxics",
                "2022-07-20",
                "Anderson Amy L, Dubanksy Benjamin D, Wilson Lindsay B, Tanguay Robyn L, Rice Charles D",
                "protein_xref_pubmed",
                "35878309",
                "protein_xref_iedb",
                "2265735"
            ],
            [
                "O73784-1",
                "Antibody Binding Epitope Mapping (AbMap) of Hundred Antibodies in a Single Run.",
                "Molecular & cellular proteomics : MCP",
                "2021",
                "Qi Huan, Ma Mingliang, Hu Chuansheng, Xu Zhao-Wei, Wu Fan-Lin, Wang Nan, Lai Dan-Yun, Li Yang, Zhang Hainan, Jiang He-Wei, Meng Qing-Feng, Guo Shujuan, Kang Yani, Zhao Xiaodong, Li Hua, Tao Sheng-Ce",
                "protein_xref_pubmed",
                "33109704",
                "protein_xref_iedb",
                "1863749"
            ]
        ]
    },
    "readme": "Name\n   - Zebrafish Protein Citations (IEDB)\n\nVersion\n   - v-2.9.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu], Mariia Kim [maria.kim@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Zebrafish Protein Citations (IEDB) dataset contains Danio rerio [taxid:7955] UniProtKB accessions mapped to publication information (PMID, title, journal name, publication, date, authors, and the corresponding IEDB accession). If you use this dataset provide proper attribution to IEDB, GlyGen and EBI-EMBL-UniProtKB.\n   - The Immune Epitope Database (IEDB) catalogs experimental data on antibody and T cell epitopes in the context of infectious disease, allergy, autoimmunity and transplantation.\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - PubMed\n   - IEDB\n\n   Pipeline Steps\n   - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: zebrafish_protein_iedb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/zebrafish_protein_iedb.csv\n   Output Subdomain\n      Name: zebrafish_protein_citations_iedb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/zebrafish_protein_citations_iedb.csv\n      Name: zebrafish_protein_citations_iedb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/zebrafish_protein_citations_iedb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"3\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"2\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"2\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"2\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"2\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"2\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"3\"",
    "downloadurl": "/ln2data/releases/data/v-2.9.1/reviewed/zebrafish_protein_citations_iedb.csv"
}