{
    "bcoid": "GLY_001422",
    "title": "Human Protein Citations (IEDB)",
    "description": "The Human Protein Citations (IEDB) dataset contains Homo sapiens [taxid:9606] UniProtKB accessions mapped ...",
    "filename_list": "human_protein_citations_iedb.csv",
    "filename": "human_protein_citations_iedb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Homo sapiens"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q96H35-1...",
                "The Length D..."
            ],
            [
                "Q15418-1...",
                "Biogenesis o..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "Q96H35-1",
                "The Length Distribution and Multiple Specificity of Naturally Presented HLA-I Ligands.",
                "Journal of immunology (Baltimore, Md. : 1950)",
                "2018-12-15",
                "Gfeller David, Guillaume Philippe, Michaux Justine, Pak Hui-Song, Daniel Roy T, Racle Julien, Coukos George, Bassani-Sternberg Michal",
                "protein_xref_pubmed",
                "30429286",
                "protein_xref_iedb",
                "177264"
            ],
            [
                "Q15418-1",
                "Biogenesis of HLA Ligand Presentation in Immune Cells Upon Activation Reveals Changes in Peptide Length Preference.",
                "Frontiers in immunology",
                "2020",
                "Marino Fabio, Semilietof Aikaterini, Michaux Justine, Pak Hui-Song, Coukos George, M\u00fcller Markus, Bassani-Sternberg Michal",
                "protein_xref_pubmed",
                "32983136",
                "protein_xref_iedb",
                "573971"
            ]
        ]
    },
    "readme": "Name\n   - Human Protein Citations (IEDB)\n\nVersion\n   - v-2.9.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu], Mariia Kim [maria.kim@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Human Protein Citations (IEDB) dataset contains Homo sapiens [taxid:9606] UniProtKB accessions mapped to publication information (PMID, title, journal name, publication, date, authors, and the corresponding IEDB accession). If you use this dataset provide proper attribution to IEDB, GlyGen and EBI-EMBL-UniProtKB.\n   - The Immune Epitope Database (IEDB) catalogs experimental data on antibody and T cell epitopes in the context of infectious disease, allergy, autoimmunity and transplantation.\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - PubMed\n   - IEDB\n\n   Pipeline Steps\n   - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: human_protein_iedb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_protein_iedb.csv\n   Output Subdomain\n      Name: human_protein_citations_iedb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_protein_citations_iedb.csv\n      Name: human_protein_citations_iedb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_protein_citations_iedb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"18515\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"2360\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"460\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"1311\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"2348\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"2360\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"622611\"",
    "downloadurl": "/ln2data/releases/data/v-2.9.1/reviewed/human_protein_citations_iedb.csv"
}