{
    "bcoid": "GLY_001419",
    "title": "Chicken Protein Citations (IEDB)",
    "description": "The Chicken Protein Citations (IEDB) dataset contains Gallus gallus [taxid:9031] UniProtKB accessions ...",
    "filename_list": "chicken_protein_citations_iedb.csv",
    "filename": "chicken_protein_citations_iedb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Gallus gallus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P01012-1...",
                "T cell recep..."
            ],
            [
                "P01005-1...",
                "Specificity ..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "P01012-1",
                "T cell receptor fingerprinting enables in-depth characterization of the interactions governing recognition of peptide-MHC complexes.",
                "Nature biotechnology",
                "2018-11-19",
                "Bentzen Amalie K, Such Lina, Jensen Kamilla K, Marquard Andrea M, Jessen Leon E, Miller Natalie J, Church Candice D, Lyngaa Rikke, Koelle David M, Becker J\u00fcrgen C, Linnemann Carsten, Schumacher Ton N M, Marcatili Paolo, Nghiem Paul, Nielsen Morten, Hadrup Sine R",
                "protein_xref_pubmed",
                "30451992",
                "protein_xref_iedb",
                "58560"
            ],
            [
                "P01005-1",
                "Specificity of IgE antibodies to sequential epitopes of hen's egg ovomucoid as a marker for persistence of egg allergy.",
                "Allergy",
                "2007-07",
                "J\u00e4rvinen K-M, Beyer K, Vila L, Bardina L, Mishoe M, Sampson H A",
                "protein_xref_pubmed",
                "17573723",
                "protein_xref_iedb",
                "114778"
            ]
        ]
    },
    "readme": "Name\n   - Chicken Protein Citations (IEDB)\n\nVersion\n   - v-2.9.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu], Mariia Kim [maria.kim@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Chicken Protein Citations (IEDB) dataset contains Gallus gallus [taxid:9031] UniProtKB accessions mapped to publication information (PMID, title, journal name, publication, date, authors, and the corresponding IEDB accession). If you use this dataset provide proper attribution to IEDB, GlyGen and EBI-EMBL-UniProtKB.\n   - The Immune Epitope Database (IEDB) catalogs experimental data on antibody and T cell epitopes in the context of infectious disease, allergy, autoimmunity and transplantation.\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - PubMed\n   - IEDB\n\n   Pipeline Steps\n   - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: chicken_protein_iedb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/chicken_protein_iedb.csv\n   Output Subdomain\n      Name: chicken_protein_citations_iedb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/chicken_protein_citations_iedb.csv\n      Name: chicken_protein_citations_iedb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/chicken_protein_citations_iedb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"55\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"195\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"85\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"176\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"195\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"195\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"1096\"",
    "downloadurl": "/ln2data/releases/data/v-2.9.1/reviewed/chicken_protein_citations_iedb.csv"
}