{ "bcoid": "GLY_001411", "title": "Mouse Glycan GlycomeAtlas", "description": "The Mouse Glycan GlycomeAtlas dataset comprises mouse [TaxID: 10090] tissue glycan information for Mus ...", "filename_list": "mouse_proteoform_glycosylation_sites_glycomeatlas.csv", "filename": "mouse_proteoform_glycosylation_sites_glycomeatlas.csv", "filetype": "csv", "categories": { "molecule": [ "Proteoform" ], "tag": [ "Glycan Tissue Expression GlycomeAtlas" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ], "species": [ "Mus musculus" ] }, "minitable": { "content": [ [ "...", "..." ], [ "...", "..." ] ], "headers": [ "uniprotkb_ca...", "glycosylatio..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "glycosylation_site_uniprotkb" }, { "type": "string", "label": "amino_acid" }, { "type": "string", "label": "saccharide" }, { "type": "string", "label": "glycosylation_type" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "source_tissue_id" }, { "type": "string", "label": "source_tissue_name" }, { "type": "string", "label": "n_sequon" }, { "type": "string", "label": "n_sequon_type" }, { "type": "string", "label": "start_pos" }, { "type": "string", "label": "end_pos" }, { "type": "string", "label": "start_aa" }, { "type": "string", "label": "end_aa" }, { "type": "string", "label": "site_seq" } ], [ "", "", "", "G00318AV", "N-linked", "glycan_xref_doi", "10.1016/B978-0-12-373600-0.00012-3", "glycan_xref_glycomeatlas", "G00318AV", "UBERON:0000955", "brain", "", "", "", "", "", "", "" ], [ "", "", "", "G00318AV", "N-linked", "glycan_xref_doi", "10.1016/B978-0-12-373600-0.00012-3", "glycan_xref_glycomeatlas", "G00318AV", "UBERON:0000992", "ovary", "", "", "", "", "", "", "" ] ] }, "readme": "Name\n - Mouse Glycan GlycomeAtlas\n\nVersion\n - v-2.9.1\n\nCreated on\n - 2023-03-14T20:00:08.127Z\n\nModified on\n - 2025-03-04T15:53:49.509Z\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Mouse Glycan GlycomeAtlas dataset comprises mouse [TaxID: 10090] tissue glycan information for Mus musculus. This data is provided by the GlycomeAtlas from GlyCosmos which provides comprehensive information on glycan structures catalogued from various publications. More information can be found here: https://glycosmos.org/glycomeatlas.\n\nDescription Domain\n Keywords\n - GlycomeAtlas\n - glycan\n - proteoform\n\n Pipeline Steps\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: glycan_classification.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/glycan_classification.csv\n Name: glycan_add_class.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/misc/glycan_add_class.csv\n Name: n_sequon_info.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/misc/n_sequon_info.csv\n Name: sample_mapping.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/misc/sample_mapping.csv\n Name: glycosmos_glycomeatlas_list.csv\n URI: https:/data.glygen.org/ln2downloads/glycosmos/2025_06_23/glycosmos_glycomeatlas_list.csv\n Output Subdomain\n Name: mouse_proteoform_glycosylation_sites_glycomeatlas.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/mouse_proteoform_glycosylation_sites_glycomeatlas.csv\n Name: mouse_proteoform_glycosylation_sites_glycomeatlas.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/mouse_proteoform_glycosylation_sites_glycomeatlas.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"glycosylation_site_uniprotkb\"\n Description: \"Site on the protein sequence of the UniProtKB entry where glycosylation is observed\"\n Unique Values: \"1\"\n Name: \"amino_acid\"\n Description: \"Three letter abbreviation code of the amino acid\"\n Unique Values: \"1\"\n Name: \"saccharide\"\n Description: \"Sugar\"\n Unique Values: \"196\"\n Name: \"glycosylation_type\"\n Description: \"Type of glycosylation (N/O/C/S linked glycosylation)\"\n Unique Values: \"2\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"1\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"196\"\n Name: \"source_tissue_id\"\n Description: \"Tissue ID from GlyConnect\"\n Unique Values: \"12\"\n Name: \"source_tissue_name\"\n Description: \"Tissue NAME from GlyConnect\"\n Unique Values: \"12\"\n Name: \"n_sequon\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"n_sequon_type\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"start_pos\"\n Description: \"Start position of the gene on the chromosome\"\n Unique Values: \"1\"\n Name: \"end_pos\"\n Description: \"End position of the gene on the chromosome\"\n Unique Values: \"1\"\n Name: \"start_aa\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"end_aa\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"site_seq\"\n Description: \"\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.9.1/reviewed/mouse_proteoform_glycosylation_sites_glycomeatlas.csv" }