{ "bcoid": "GLY_001408", "title": "Human Glycan Tissue Expression TableMaker", "description": "The Human Glycan Tissue Expression TableMaker dataset provides glycan tissue expression annotations for ...", "filename_list": "human_proteoform_glycosylation_sites_tablemaker.csv", "filename": "human_proteoform_glycosylation_sites_tablemaker.csv", "filetype": "csv", "categories": { "molecule": [ "Proteoform" ], "tag": [ "Glycan Tissue Expression TableMaker" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ], "species": [ "Homo sapiens" ] }, "minitable": { "content": [ [ "...", "..." ], [ "...", "..." ] ], "headers": [ "uniprotkb_ca...", "glycosylatio..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "glycosylation_site_uniprotkb" }, { "type": "string", "label": "amino_acid" }, { "type": "string", "label": "saccharide" }, { "type": "string", "label": "glycosylation_type" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "source_tissue_name" }, { "type": "string", "label": "source_tissue_id" }, { "type": "string", "label": "source_cell_line_id" }, { "type": "string", "label": "do_id" }, { "type": "string", "label": "strain" }, { "type": "string", "label": "src_file_name" }, { "type": "string", "label": "src_row_idx" }, { "type": "string", "label": "start_pos" }, { "type": "string", "label": "end_pos" }, { "type": "string", "label": "start_aa" }, { "type": "string", "label": "end_aa" }, { "type": "string", "label": "site_seq" } ], [ "", "", "", "G19386HE", "", "glycan_xref_pubmed", "23516363", "glycan_xref_tablemaker", "G19386HE", "lung", "UBERON:0002048", "", "", "", "TD4951079.csv", "1", "", "", "", "", "" ], [ "", "", "", "G44576SJ", "", "glycan_xref_pubmed", "23516363", "glycan_xref_tablemaker", "G44576SJ", "lung", "UBERON:0002048", "", "", "", "TD4951079.csv", "2", "", "", "", "", "" ] ] }, "readme": "Name\n - Human Glycan Tissue Expression TableMaker\n\nVersion\n - v-2.9.1\n\nCreated on\n - 2023-03-14T20:00:08.127Z\n\nModified on\n - 2025-05-29T15:55:26\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Dan Lyman [danlyman@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Human Glycan Tissue Expression TableMaker dataset provides glycan tissue expression annotations for Homo sapiens [TaxID: 9606]. Annotated by the TableMaker team, this dataset is available through GlyGen. More details can be found here: https://glygen.ccrc.uga.edu/tablemaker/.\n\nDescription Domain\n Keywords\n - TableMaker\n - glycan\n\n Pipeline Steps\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: sample_mapping.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/misc/sample_mapping.csv\n Name: TD1040297.csv\n URI: https:/data.glygen.org/ln2downloads/tablemaker/2025_05_23/TD1040297.csv\n Name: TD1127346.csv\n URI: https:/data.glygen.org/ln2downloads/tablemaker/2025_05_23/TD1127346.csv\n Name: TD1468274.csv\n URI: https:/data.glygen.org/ln2downloads/tablemaker/2025_05_23/TD1468274.csv\n Name: TD2415036.csv\n URI: https:/data.glygen.org/ln2downloads/tablemaker/2025_05_23/TD2415036.csv\n Name: TD2986138.csv\n URI: https:/data.glygen.org/ln2downloads/tablemaker/2025_05_23/TD2986138.csv\n Name: TD4951079.csv\n URI: https:/data.glygen.org/ln2downloads/tablemaker/2025_05_23/TD4951079.csv\n Name: TD7181079.csv\n URI: https:/data.glygen.org/ln2downloads/tablemaker/2025_05_23/TD7181079.csv\n Name: TD7732158.csv\n URI: https:/data.glygen.org/ln2downloads/tablemaker/2025_05_23/TD7732158.csv\n Name: TD8189974.csv\n URI: https:/data.glygen.org/ln2downloads/tablemaker/2025_05_23/TD8189974.csv\n Name: TD8741863.csv\n URI: https:/data.glygen.org/ln2downloads/tablemaker/2025_05_23/TD8741863.csv\n Output Subdomain\n Name: human_proteoform_glycosylation_sites_tablemaker.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_proteoform_glycosylation_sites_tablemaker.csv\n Name: human_proteoform_glycosylation_sites_tablemaker.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_proteoform_glycosylation_sites_tablemaker.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"glycosylation_site_uniprotkb\"\n Description: \"Site on the protein sequence of the UniProtKB entry where glycosylation is observed\"\n Unique Values: \"1\"\n Name: \"amino_acid\"\n Description: \"Three letter abbreviation code of the amino acid\"\n Unique Values: \"1\"\n Name: \"saccharide\"\n Description: \"Sugar\"\n Unique Values: \"292\"\n Name: \"glycosylation_type\"\n Description: \"Type of glycosylation (N/O/C/S linked glycosylation)\"\n Unique Values: \"1\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"8\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"292\"\n Name: \"source_tissue_name\"\n Description: \"Tissue NAME from GlyConnect\"\n Unique Values: \"3\"\n Name: \"source_tissue_id\"\n Description: \"Tissue ID from GlyConnect\"\n Unique Values: \"3\"\n Name: \"source_cell_line_id\"\n Description: \"Cell line ID\"\n Unique Values: \"1\"\n Name: \"do_id\"\n Description: \"Disease Ontology identifier\"\n Unique Values: \"8\"\n Name: \"strain\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"src_file_name\"\n Description: \"\"\n Unique Values: \"8\"\n Name: \"src_row_idx\"\n Description: \"\"\n Unique Values: \"155\"\n Name: \"start_pos\"\n Description: \"Start position of the gene on the chromosome\"\n Unique Values: \"1\"\n Name: \"end_pos\"\n Description: \"End position of the gene on the chromosome\"\n Unique Values: \"1\"\n Name: \"start_aa\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"end_aa\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"site_seq\"\n Description: \"\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.9.1/reviewed/human_proteoform_glycosylation_sites_tablemaker.csv" }