{
    "bcoid": "GLY_001397",
    "title": "Glycan Species Citations",
    "description": "The Glycan Species Citations dataset contains details of the publications for GlyGen Organisms.",
    "filename_list": "glycan_citations_species.csv",
    "filename": "glycan_citations_species.csv",
    "filetype": "csv",
    "categories": {
        "molecule": [
            "Glycan"
        ],
        "tag": [
            "Glycan Species Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "species": [
            "Drosophila melanogaster",
            "Homo sapiens",
            "Mus musculus",
            "Sus scrofa",
            "Rattus",
            "Rattus norvegicus",
            "Severe acute respiratory syndrome coronavirus 2",
            "Saccharomyces cerevisiae",
            "Dictyostelium discoideum",
            "Hepacivirus C",
            "Arabidopsis thaliana",
            "Bos taurus",
            "Cricetulus griseus",
            "Danio rerio",
            "Gallus gallus",
            "Hepatitis C virus (isolate H77)",
            "Severe acute respiratory syndrome-related coronavirus"
        ]
    },
    "minitable": {
        "content": [
            [
                "G00027MO...",
                "Quantitation..."
            ],
            [
                "G00030VN...",
                "Characterisa..."
            ]
        ],
        "headers": [
            "glytoucan_ac...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "tax_id"
                },
                {
                    "type": "string",
                    "label": "tax_name"
                }
            ],
            [
                "G00027MO",
                "Quantitation and isomeric structure analysis of free oligosaccharides present in the cytosol fraction of mouse liver: detection of a free disialobiantennary oligosaccharide and glucosylated oligomannosides.",
                "Journal of biochemistry",
                "1999 Nov",
                "Ohashi S, Iwai K, Mega T, Hase S",
                "glycan_xref_pubmed",
                "10544277",
                "PubMed",
                "10544277",
                "10090",
                "Mus musculus"
            ],
            [
                "G00030VN",
                "Characterisation by mass spectrometry and 1H-NMR of novel hexasaccharides among the acidic O-linked carbohydrate chains of bovine submaxillary mucin.",
                "European journal of biochemistry",
                "1992-08-01",
                "Chai W, Hounsell E F, Cashmore G C, Rosankiewicz J R, Feeney J, Lawson A M",
                "glycan_xref_pubmed",
                "1323463",
                "PubMed",
                "1323463",
                "9913",
                "Bos taurus"
            ]
        ]
    },
    "readme": "Name\n   - Glycan Species Citations\n\nVersion\n   - v-2.9.1\n\nCreated on\n  - 2023-03-14T20:13:36.255Z\n\nModified on\n   - 2025-04-11T18:08:01.662Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Glycan Species Citations dataset contains details of the publications for GlyGen Organisms.\n\nDescription Domain\n   Keywords\n   - Publications\n   - Citations\n   - PubMed\n   - GlyTouCan\n\n   Pipeline Steps\n   - Step-1: The input file was downloaded from the author and a python script is used to extract the data for the GlyTouCan accessions based on the acession master list. Refer to the usability domain for more information on master list.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/compiled/all_blacklisted_pmids.csv\n      Name: glycan_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/glycan_masterlist.csv\n      Name: glycan_species.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/glycan_species.csv\n   Output Subdomain\n      Name: glycan_citations_species.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/glycan_citations_species.csv\n      Name: glycan_citations_species.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/glycan_citations_species.stat.csv\n\nFields\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"3857\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"1697\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"361\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"1350\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"1675\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"1698\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"1698\"\n      Name: \"tax_id\"\n     Description: \"NCBI Taxonomy database Identifier\"\n      Unique Values: \"15\"\n      Name: \"tax_name\"\n     Description: \"NCBI Taxonomy name\"\n      Unique Values: \"15\"",
    "downloadurl": "/ln2data/releases/data/v-2.9.1/reviewed/glycan_citations_species.csv"
}