{
    "bcoid": "GLY_001295",
    "title": "Zebrafish Proteoform Glycosylation Citations (UniProtKB)",
    "description": "The Zebrafish Proteoform Glycosylation Citations (UniProtKB) dataset contains Danio rerio [TaxID:7955] ...",
    "filename_list": "zebrafish_proteoform_citations_glycosylation_sites_uniprotkb.csv",
    "filename": "zebrafish_proteoform_citations_glycosylation_sites_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Danio rerio"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Protein Citations UniProtKB"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "F8W463-1...",
                "Crystal stru..."
            ],
            [
                "Q6DHE8-1...",
                "Tyrosine gly..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                }
            ],
            [
                "F8W463-1",
                "Crystal structure of the ATP-gated P2X(4) ion channel in the closed state.",
                "Nature",
                "2009-07-30",
                "Kawate Toshimitsu, Michel Jennifer Carlisle, Birdsong William T, Gouaux Eric",
                "protein_xref_pubmed",
                "19641588",
                "protein_xref_uniprotkb_gly",
                "F8W463",
                ""
            ],
            [
                "Q6DHE8-1",
                "Tyrosine glycosylation of Rho by Yersinia toxin impairs blastomere cell behaviour in zebrafish embryos.",
                "Nature communications",
                "2015-07-20",
                "Jank Thomas, Eckerle Stephanie, Steinemann Marcus, Trillhaase Christoph, Schimpl Marianne, Wiese Sebastian, van Aalten Daan M F, Driever Wolfgang, Aktories Klaus",
                "protein_xref_pubmed",
                "26190758",
                "protein_xref_uniprotkb_gly",
                "Q6DHE8",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Zebrafish Proteoform Glycosylation Citations (UniProtKB)\n\nVersion\n   - v-2.9.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Zebrafish Proteoform Glycosylation Citations (UniProtKB) dataset contains Danio rerio [TaxID:7955] citation details of the publications present in the dataset Zebrafish Glycosylation Sites (UniProtKB) (https://data.glygen.org/GLY_000038).\n\nExecution Domain\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/compiled/all_blacklisted_pmids.csv\n      Name: zebrafish_proteoform_glycosylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/zebrafish_proteoform_glycosylation_sites_uniprotkb.csv\n   Output Subdomain\n      Name: zebrafish_proteoform_citations_glycosylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/zebrafish_proteoform_citations_glycosylation_sites_uniprotkb.csv\n      Name: zebrafish_proteoform_citations_glycosylation_sites_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/zebrafish_proteoform_citations_glycosylation_sites_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"6\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"4\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"2\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"4\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"4\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"4\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"6\"\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.9.1/reviewed/zebrafish_proteoform_citations_glycosylation_sites_uniprotkb.csv"
}