{
    "bcoid": "GLY_001267",
    "title": "Zebrafish Protein Canonical sequences (UniProtKB)",
    "description": "The Zebrafish Protein Canonical (UniProtKB) Sequences dataset contains Danio rerio [taxid:7955] canonical ...",
    "filename_list": "zebrafish_protein_canonicalsequences.fasta",
    "filename": "zebrafish_protein_canonicalsequences.fasta",
    "filetype": "fasta",
    "categories": {
        "species": [
            "Danio rerio"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Canonical Protein fasta Sequences"
        ],
        "file_type": [
            "fasta"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "iconfilename": "fasta_icon_all.png",
    "sampledata": {
        "type": "html",
        "data": "<pre>\n>tr|B0S6H6-1|B0S6H6_DANRE Isoform 1 of Synaptophysin b OS=Danio rerio OX=7955 GN=sypb PE=1 SV=1 CANONICAL=B0S6H6-1\nMDVANQLVATGQFTIVKQPLGFIKILQWFFAIFAFATCGGYSGVFRMSVECENRSESDLN\nIEVEFAYPFRLHQVWFDAPTCKGSEPERLFLVGDNSSSAEFFVTIGVFSFLYSMAAISVY\nIFLLEKYREGNKGAQADFVVTAVFTFMWLVSSSAWAKGLSDVKRATDPDDVINLIPACER\nEENRCKELHEPVVSGLNTSVAFGFCNVILWGGNLWFIFKETGWMAAFAGTYMPSGEKQPA\nPDSFGQGYGQEGYGQDQYASSQGGYQPDYGQQGGYEGGGYNQGVYGQGEPTSFSNEM\n\n\n>tr|B0S6H4-1|B0S6H4_DANRE Isoform 1 of Proteolipid protein 2 OS=Danio rerio OX=7955 GN=plp2b PE=1 SV=1 CANONICAL=B0S6H4-1\nMAETEGSPFGGCLEKLMSYARTRKGTILAAEILLSFIILICYAASMYGGYTAVAICEMVF\nAIIFFVVYMLELDKQFLVVNWLWSDLFRAVIGAALYIITSLICVIGGTGDGARIAGGVFG\nLLAGILFAYDSYTLYLDIKSSRQHAAAPTDDRV\n\n\n>tr|B8JLA1-1|B8JLA1_DANRE Isoform 1 of Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein OS=Danio rerio OX=7955 GN=acap2a PE=4 SV=2 CANONICAL=B8JLA1-1\nMKVTVDFEECLKDSPRFRATIEDVEEDFGELESKLDKLVKLCIGMIDAGRVYNQANKQFV\nNGIRDLALQSTRDEVIGSSLAAFSETLQEMNNYHTILFDQAQRSIRSQLQTFVKEDLRKF\nKDAKKQFDKVSEEKEVALVKNAQVPRNKLHEVEEATNILTTTQKFFRNIALDYVLQINVL\nQSKRRLEILKSMLAYMNANLTFFNQGHDLFSQLQPLMKQLSGQLDQLVVDSAKEKRDMEQ\nKHSSIQQKAALQDFSTEDSKLEYNIDTDNGIAMEGYLFKRASNAFKTWNRRWFSIQNSQL\nVYQKRFRDNPTVVVEDLRLCTVKHCEDVERRFCFEVLSPSKSCMMQADSEKLRQAWIKAV\nQSSIASAYRENEDEIISLDRQSSASLGSLDSGCESVKLVKGESALQRVLAIPGNEFCCDC\nGQSDPRWASINLCITLCIECSGIHRSLGVHNSKVRSLTLDTWEPELLKLMCELGNDVINQ\nIYEAHREENGGKKPQPGDPRREIEAFIRAKYVDKRFVLKPTEQEQMEKIMTLRKHDKRMQ\nGNMEFLPPRPPPPTPKLRTASNASVASLSGQEVRRDSLFCPDELDSLFSYFDTSSKLQNL\nKRADSGIQNSADGSREMLASTPSSSSLSETDLPESEAAANQAERSPVFSKLTNFSADSLL\nYWASCACSLKDMAQALAHGADINWVNLEDSSRTPLIQAVQGGSLISCEFLLQNAACVDQQ\nDIRGRGPLHHATILGHTGQVCLFLKRGAKQNTVDTDSRSPLSIAVEAANADIVTLLRLAK\nMNEEMRGSEGAFGQAGQYSLSQSHTEQQYKKCIQEFISLHLQES\n\n\n>tr|A0A8M3B6V6-1|B0S6H8_DANRE Isoform 1 of Liprin-alpha-4 OS=Danio rerio OX=7955 GN=ppfia4 PE=3 SV=1 CANONICAL=A0A8M3B6V6-1\nMMCEVMPTINEGDSVSSQRGSQNGTDAESNFEQLMVNMLDERDKLLESLRETQETLIQSQ\nTKLQDVLHERDVLQRQLNSALPQEFATLTKELNLCREQLLEKEEEISELKAERNNTRLLL\nEHLECLVSRHERSLRMTVVKRQAPPPSGVSSEVEVLKALKSLFEHHKALDEKVRERLRVA\nLERVTTLEGQLSAATQEVVMLRQRKDGRADGDAVDRMDSSKPTWKRLPNGSIDAHDDTSR\nCLELQELLDKANKELAQNRERIGGLTNRMSELETELATARKDLLKSEELSTKHQRDIREA\nMAQKEDMEERITTLEKRYLAAQRETTSIHDLNDKLENELATKDSLHRQSEEKVRHLQELL\nELAEQRLQQTMRKAETLPEVEAELAQRVAALTKAEERHGNIEERLRQLEAQLEEKNQELG\nRARQREKMNEEHNKRLSDTVDRLLTESNERLQLHLKERMAALEDKNALIHDLENSQKQLE\nEFHHNKERLIGEIEKLRAELDHLKRRSGAFGDGTHPRSHLGSATDLRFSVVEGQGDHYSS\nTGVIRRAQKGRMVALRDEPTKILPMVEQDWDRSQPSSLRASRTHLMGSDTELSDLDDEDR\nETIFSSADILSPSGHSDAQTLALMLQEQLDAINEEIRMIQVERESAELRADEIESRVNSG\nSMDGLNVTLRPRSSIPTSVTALSLASSSPPVSGRSTPKLTSGSTAHELGIMTLPSDLRKH\nRRRVASPVEAREDKATIKCETSPPSSPRSLRIDQMNFAQLTGSLEDGRGGNKKKGIKSSI\nGRLFGKKEKARLDQPLSKDGQMTPPVIQDFEMSIGDTMTLSKLGTQAERDRRMKKKHELL\nEDARRKGLPFAQWDGPTVVSWLELWVGMPAWYVAACRANVKSGAIMSALSDTEIQREIGI\nSNPLHRLKLRLAIQEMVSLTSPSAPLTSRTSSGNVWVTHEEMENMATSTKMDNEEGSWAQ\nTLAYGDMNHEWIGNEWLPSLGLPQYRSYFMECLVDARMLDHLTKKDLRTHLKMVDSFHRA\nSLHYGIMCLKRLNYDRKELERRREDFQHDIKDTLVWTNDQVMQWIQNIGLKEYSNNLLES\nGVHGALVALDETFDFSSLALILQIPMQNTQARQILEREFNNLLALGTDRRLEECDDKSFR\nRSPSWRKRFRPRDGQGLGMMPGSFETLPAGFRLNTMSIPHSMTAVSKKQLQPEAAGPPAP\nQRLDPSAVRTYSC\n\n\n>tr|A0A8M1PCV1-1|A0A8M1PCV1_DANRE Isoform 1 of Uncharacterized protein LOC393372 OS=Danio rerio OX=7955 GN= PE=4 SV=1 CANONICAL=A0A8M1PCV1-1\nMKKAKKRLPASGSRASVGRHEENLPWKKKKLLDIHQALNSDPVDIETLRQAAVSEGGLLT\nDDIRRKVWPKLLNINVYSLPAKPSKDVREDHKDYRQVVLDVRRSMRRFPKGMRVDEREVL\nQEQLIDIILDVLRRNPQLHYYQGYHDIVVTFLLVLGERMTIAIMEKLSNHHLRDFMDPTM\nDSTKHILNYLMPLLERVDRELHDFMIRSEVGTIFALSWLITWYGYVLSDFRHVLRLYDFF\nLASHPLMAIYFAAVIVLYRQKEVKSSECDMASVHHLLSRMPQDLPYEDLIGRAQSLFSSC\nPPSQMSRSAALQSRNILAISTFTDFQTSTRTQRPDSVLRQQIQNRQENQLALPMMPQPTG\nTNQLIKMAVWGLSATLGAAALAVAQTALDWAPEFLSQLF\n\n\n>tr|B0S8L0-1|B0S8L0_DANRE Isoform 1 of NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Danio rerio OX=7955 GN=nfu1 PE=1 SV=1 CANONICAL=B0S8L0-1\nMAAYRSVGFGRNLAAVLKRTYHGSGLIRPPVYTMGRSPVPQQTTTVFIRNMFIQTQDTPN\nPNSLKFLPGRAVLDSGTMDFAGPRDAFCSPLARQLFRIDGVKSVFFGPDFITITKTSGET\nEWKVIKPDVFATIMDFFTSGLPVINEADAPRADTAPSEDDDEVVAMIKELLDTRIRPTVQ\nEDGGDVLYHGFEDGIVKLKLQGSCTSCPSSIITLKNGIQNMLQFYVPEVEGVEQVKEEDV\nEVA\n\n\n>sp|H0WFA5-1|BUCKY_DANRE Isoform 1 of Bucky ball OS=Danio rerio OX=7955 GN=buc PE=1 SV=1 CANONICAL=H0WFA5-1\nMEGINNNSQPMGVGQPHHPVNHTRPFFYVQPPSQPYFMYQWPMNPYGHYGFPGPALHFGR\nPYMAPYQFMQYPGYVIPHAPMQPIDYRRINPHYPSVASYDLRVRHHFQNAGMHRETACSE\nVQTDPSDSVNKLIDKIESLKACELGSDKGPNNVVSSTPDVVQGEKLTRLNEDSNLEVATK\nECKEDPVTRPTTYSDSAYDAESSQGRLDECVFSDVLPLDSSSVHEEEEEEEKDVNEEDEP\nQTVADEICSQNEMSASTTSNVFCSGVQSIADPTECHDLEKLGDEQKQDIPSADAAAVIEP\nLISLSEDFDLPYQILRLPCNKTTTGLSLEREIDPLVYFDSPSTLLPPQNYLSSIGSAYSY\nSYYPQVTQERQSVLSPSIDELSSRDEMFSTDVEDLEVVPGHVYVGGGRLAEASDMPVRSR\nKELPSVDKTCSVCQKTCACCGSTLQDEVGMCKMAEHSHPERDEMSDQDCDYDLEAEVRSN\nCESPRVSKRKCCSRHALPSCGHHCAKHRHRKLLCEGQESCDLREQARVHPKGECCEEYGA\nLAKADKRIQKGALCRPCIEQQWREGVVSDQENWASCGAKPRSWRQVTGPQDQGRTPLRRS\nTCKSIHQQRPRSEYNDYDETEFTYCQRGRGSMKKRGSRY\n\n\n>tr|A0A8M1PCV4-1|A0A8M1PCV4_DANRE Isoform 1 of G-protein coupled receptor 39 OS=Danio rerio OX=7955 GN=gpr39 PE=3 SV=1 CANONICAL=A0A8M1PCV4-1\nMDPEQPERDWQQLEPSYGLKVFLTVLYCLILSLGVLGNSATIHVAQVLQRNGYLQRSVAE\nHMVSLACSDLLVLLIGLPVELYSAIWFPFLSRSGDAACRIYNFLFELCSYATILNVATLS\nLERYLAICHPFRYRALRGGRTRRLLLAAWLCSALVALPLLVATGTEGYVPAGRQTPVQNL\nTFCTSLSQHWVMYRTSIFTAFVLYLLVLAGVAFMCRAMILVLRAPMGPAEAGASGDHKHQ\nSARGKASRKQTILFLVLIVCALFVCWMPNQIRRLMTAAVPKSSWTGSYLTSYIKLHPVAD\nSFFYLSSVLNPMLYNLSSRQFRSAFLQTLLCRLSLQHANRRTLENSGASKSSNNTLRPLL\nQRSLNRIRMATSSRSTPPSSAERRDSLNTTDRPQGEGKLTLDPQNTTNWPQGEGELTSDS\nQEKERNQLTHCPTLPDEQTS\n\n\n>tr|A0AB13A990-1|A0AB13A990_DANRE Isoform 1 of POU domain protein OS=Danio rerio OX=7955 GN=pou2f2b PE=3 SV=1 CANONICAL=A0AB13A990-1\nMFVPLPVPFVLPRTASDLHAWRLKSPLALRSHSDIRMSKPVEVENPAADSPMESTDSERN\nGSDSNNQVQPMKINPFSISPTLSSSIKAKVEDCGEMSPTTATPAQTALTHTQLMLTGGQL\nAGLTALLPAQQQLLLQQAQLLAAAVQQSHVAHAANQQQAQQQAQQQANQQAAQQQSQGQS\nQSTQEQAAAAPVPPPPPPPPHQLPLSQPIQLTAQDIQQLLQLQQLVLVPGHTLPSPAQFL\nLPQTQQGQQGLLSTPNLIPLPQQNQGSLLAAPPRLSLQAQREKIAESSLNTVTTVTSHPE\nEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMC\nKLKPLLEKWLTDAETMSMDSTLPSPSSLSSPSLGFEGLPGRRRKKRTSIETNVRVALEHS\nFLANQKPTSEEILLISEKLNMEKEVIRVWFCNRRQKEKRINPSSATPPLPSQPQPTSHKP\nPCYSPHMMSSQGPRQTVGSLSTAVTTMSSVCPMTPSGPSLSSTPSPVTPPPRGDSSPAPP\nTHSTLNLSTGSWHKKNGDVSNYITDFAASLRNTVRGVNTGLNQALLGSNPLATIQALAAS\nGGQLPISSLEGSSKVLIGGSGAQGAGLPSSLFLNHSSMLPLATGPGMGLGGSAVGKTSFP\nVTGGMSPSPCSSPASSYSSGEMLHSPHSIGGAKIE\n\n\n</pre>"
    },
    "readme": "Name\n   - Zebrafish Protein Canonical sequences (UniProtKB)\n\nVersion\n   - v-2.9.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Zebrafish Protein Canonical (UniProtKB) Sequences dataset contains Danio rerio [taxid:7955] canonical protein fasta sequences from the UniProtKB database. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - protein sequence\n   - fasta\n   - UniProtKB canonical accessions\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB fasta sequence for all zebrafish canonical accessions data from the triplestore containing triples from nt file and extracts it into a dataset as fasta format\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-danio-rerio.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2025_05_20/uniprot-proteome-danio-rerio.nt\n   Output Subdomain\n      Name: zebrafish_protein_canonicalsequences.fasta\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/zebrafish_protein_canonicalsequences.fasta\n      Name: zebrafish_protein_canonicalsequences.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/zebrafish_protein_canonicalsequences.stat.csv\n\nFields\n      Name: \"sequence\"\n     Description: \"Amino acid sequence\"\n      Unique Values: \"26728\"",
    "downloadurl": "/ln2data/releases/data/v-2.9.1/reviewed/zebrafish_protein_canonicalsequences.fasta"
}