{
    "bcoid": "GLY_001262",
    "title": "Zebrafish UniProtKB Xref AGR",
    "description": "The Zebrafish UniProtKB Xref AGR dataset contains Danio rerio [taxid:7955] UniProtKB canonical accessions ...",
    "filename_list": "zebrafish_protein_xref_alliance_genome_resources.csv",
    "filename": "zebrafish_protein_xref_alliance_genome_resources.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Danio rerio"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "AGR cross-references"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "B0S6H6-1...",
                "protein_xref..."
            ],
            [
                "B0S6H4-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "xref_label"
                }
            ],
            [
                "B0S6H6-1",
                "protein_xref_alliance_genome_resources",
                "ZFIN:ZDB-GENE-040718-205",
                ""
            ],
            [
                "B0S6H4-1",
                "protein_xref_alliance_genome_resources",
                "ZFIN:ZDB-GENE-030710-11",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Zebrafish UniProtKB Xref AGR\n\nVersion\n   - v-2.9.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Zebrafish UniProtKB Xref AGR dataset contains Danio rerio [taxid:7955] UniProtKB canonical accessions cross-referenced to AGR database accessions/identifiers. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB, AGR, and GlyGen\n   - The AGR (Alliance of Genome Resources) is a consortium of seven model organism databases (MODs) and the Gene Ontology (GO) Consortium, whose goal is to provide an integrated view of their data to all biologists, clinicians and other interested parties.\n\nDescription Domain\n   Keywords\n   - orthologs\n   - homologs\n   - AGR\n   - cross-reference\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to AGR database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-danio-rerio.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2025_05_20/uniprot-proteome-danio-rerio.nt\n   Output Subdomain\n      Name: zebrafish_protein_xref_alliance_genome_resources.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/zebrafish_protein_xref_alliance_genome_resources.csv\n      Name: zebrafish_protein_xref_alliance_genome_resources.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/zebrafish_protein_xref_alliance_genome_resources.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"19708\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"19837\"\n      Name: \"xref_label\"\n     Description: \"Label/Name associated with x-ref\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.9.1/reviewed/zebrafish_protein_xref_alliance_genome_resources.csv"
}