{
    "bcoid": "GLY_001244",
    "title": "Bovine Protein Citations (RefSeq)",
    "description": "The Bovine Protein Citations (RefSeq) datasets contains Bos taurus [taxid:9913] UniProtKB accessions ...",
    "filename_list": "bovine_protein_citations_refseq.csv",
    "filename": "bovine_protein_citations_refseq.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Bos taurus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P22027-1...",
                "The proximal..."
            ],
            [
                "E1BHF2-1...",
                "Association ..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "P22027-1",
                "The proximal N-terminal amino acid residues are required for the coupling activity of the bovine heart mitochondrial factor B.",
                "Archives of biochemistry and biophysics",
                "2008-05-01",
                "Belogrudov Grigory I",
                "protein_xref_pubmed",
                "18319055",
                "protein_xref_refseq",
                "NP_001007813"
            ],
            [
                "E1BHF2-1",
                "Association between an alternative promoter polymorphism and sperm deformity rate is due to modulation of the expression of KATNAL1 transcripts in Chinese Holstein bulls.",
                "Animal genetics",
                "2014-10",
                "Zhang X, Wang C, Zhang Y, Ju Z, Qi C, Wang X, Huang J, Zhang S, Li J, Zhong J, Shi F",
                "protein_xref_pubmed",
                "24990491",
                "protein_xref_refseq",
                "NP_001179847"
            ]
        ]
    },
    "readme": "Name\n   - Bovine Protein Citations (RefSeq)\n\nVersion\n   - v-2.9.1\n\nModified on\n   - 2024-11-11T19:36:10.445Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Bovine Protein Citations (RefSeq) datasets contains Bos taurus [taxid:9913] UniProtKB accessions mapped to publication information (PMID, title, journal name, publication, date, authors of corresponding RefSeq accessions). If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen.\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - RefSeq\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script parses the NCBI RefSeq gpff files to extract the publication information. The script also maps RefSeq accessions to the UniProtKB Canonical accessions.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/compiled/all_blacklisted_pmids.csv\n      Name: bovine_protein_function_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/bovine_protein_function_refseq.csv\n   Output Subdomain\n      Name: bovine_protein_citations_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/bovine_protein_citations_refseq.csv\n      Name: bovine_protein_citations_refseq.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/bovine_protein_citations_refseq.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"1500\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"2902\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"507\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"1276\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"2884\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"2902\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"1500\"",
    "downloadurl": "/ln2data/releases/data/v-2.9.1/reviewed/bovine_protein_citations_refseq.csv"
}