{
    "bcoid": "GLY_001219",
    "title": "Bovine Protein PTM Annotation (UniProtKB)",
    "description": "The Bovine Protein PTM Annotation (UniProtKB) dataset contains Bos taurus [taxid:9913] PTM annotations ...",
    "filename_list": "bovine_protein_ptm_annotation_uniprotkb.csv",
    "filename": "bovine_protein_ptm_annotation_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Bos taurus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "PTM annotation"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P80425-1...",
                "protein_xref..."
            ],
            [
                "P80425-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "eco_id"
                },
                {
                    "type": "string",
                    "label": "ptm_annotation"
                }
            ],
            [
                "P80425-1",
                "protein_xref_uniprotkb",
                "P80425",
                "ECO_0000269",
                "Deamidation and transpeptidation at the beta carboxyl of Asn-105 forms an isoaspartyl residue and Edman degradation appears as though blocked. This rearrangement gives rise to an extra negative charge carried by the acid form."
            ],
            [
                "P80425-1",
                "protein_xref_pubmed",
                "8344916",
                "ECO_0000269",
                "Deamidation and transpeptidation at the beta carboxyl of Asn-105 forms an isoaspartyl residue and Edman degradation appears as though blocked. This rearrangement gives rise to an extra negative charge carried by the acid form."
            ]
        ]
    },
    "readme": "Name\n   - Bovine Protein PTM Annotation (UniProtKB)\n\nVersion\n   - v-2.9.1\n\nModified on\n   - 2024-11-04T17:07:32.504Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Bovine Protein PTM Annotation (UniProtKB) dataset contains Bos taurus [taxid:9913] PTM annotations for UniProtKB canonical accessions. The annotation is the curated statements of mainly about glycosylation and phosphorylation. If you use this dataset please give proper attribution to UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - ptm annotation\n   - glycosylation\n   - phosphorylation\n\n   Pipeline Steps\n   - Step-1: The script extracts the ptm annotation strings from the triplestore for the UniProtKB canonical sequences and extracts as a dataset in a csv format\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-bos-taurus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2025_05_20/uniprot-proteome-bos-taurus.nt\n   Output Subdomain\n      Name: bovine_protein_ptm_annotation_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/bovine_protein_ptm_annotation_uniprotkb.csv\n      Name: bovine_protein_ptm_annotation_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/bovine_protein_ptm_annotation_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"151\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"2\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"376\"\n      Name: \"eco_id\"\n     Description: \"Evidence & Conclusion Ontology (ECO) identifier\"\n      Unique Values: \"3\"\n      Name: \"ptm_annotation\"\n     Description: \"The Post Translational Modifiaction (PTM) annotation in UniProtKB that provides more context and description about the PTMs occuring on a proein\"\n      Unique Values: \"150\"",
    "downloadurl": "/ln2data/releases/data/v-2.9.1/reviewed/bovine_protein_ptm_annotation_uniprotkb.csv"
}