{
    "bcoid": "GLY_001185",
    "title": "Bovine Proteoform Glycation Citations (UniProtKB)",
    "description": "The Bovine Proteoform Glycation Citations (UniProtKB) dataset contains Bos taurus [taxid:9913] publication ...",
    "filename_list": "bovine_proteoform_citations_glycation_sites_uniprotkb.csv",
    "filename": "bovine_proteoform_citations_glycation_sites_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Bos taurus"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Glycation Citations (UniProtKB)"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P02522-1...",
                "Sites of gly..."
            ],
            [
                "P02526-1...",
                "Identificati..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "P02522-1",
                "Sites of glycation of beta B2-crystallin by glucose and fructose.",
                "Biochemical and biophysical research communications",
                "1996-12-04",
                "Zhao H R, Smith J B, Jiang X Y, Abraham E C",
                "protein_xref_pubmed",
                "8954094",
                "protein_xref_uniprotkb_gly",
                "P02522"
            ],
            [
                "P02526-1",
                "Identification of the glycation site of lens gamma B-crystallin by fast atom bombardment tandem mass spectrometry.",
                "Analytical biochemistry",
                "1996-12-01",
                "Smith J B, Hanson S R, Cerny R L, Zhao H R, Abraham E C",
                "protein_xref_pubmed",
                "8954545",
                "protein_xref_uniprotkb_gly",
                "P02526"
            ]
        ]
    },
    "readme": "Name\n   - Bovine Proteoform Glycation Citations (UniProtKB)\n\nVersion\n   - v-2.9.1\n\nCreated on\n  - 2021-06-04T12:34:52.072705\n\nModified on\n   - 2024-12-10T17:03:34.206Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Bovine Proteoform Glycation Citations (UniProtKB) dataset contains Bos taurus [taxid:9913] publication information of glycoproteins from UniProtKB. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nDescription Domain\n   Keywords\n   - publications\n   - PMID\n   - journal\n   - citations\n   - authors\n   - UniProtKB\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs\n\nExecution Domain\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/compiled/all_blacklisted_pmids.csv\n      Name: bovine_proteoform_glycation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/bovine_proteoform_glycation_sites_uniprotkb.csv\n   Output Subdomain\n      Name: bovine_proteoform_citations_glycation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/bovine_proteoform_citations_glycation_sites_uniprotkb.csv\n      Name: bovine_proteoform_citations_glycation_sites_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/bovine_proteoform_citations_glycation_sites_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"7\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"6\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"5\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"6\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"6\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"6\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"7\"",
    "downloadurl": "/ln2data/releases/data/v-2.9.1/reviewed/bovine_proteoform_citations_glycation_sites_uniprotkb.csv"
}