{
    "bcoid": "GLY_001184",
    "title": "Bovine Proteoform Phosphorylation Citations (iPTMnet)",
    "description": "The Bovine Proteoform Citations (iPTMNet) contains Bos taurus [taxid:9913] publication information of ...",
    "filename_list": "bovine_proteoform_citations_phosphorylation_sites_iptmnet.csv",
    "filename": "bovine_proteoform_citations_phosphorylation_sites_iptmnet.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Bos taurus"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Phosphorylation Citations (iPTMnet)"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P08487-1...",
                "A new functi..."
            ],
            [
                "P00514-1...",
                "Phosphorylat..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "P08487-1",
                "A new function for phospholipase C-gamma1: coupling to the adaptor protein GRB2.",
                "Archives of biochemistry and biophysics",
                "1997-09-01",
                "Pei Z, Maloney J A, Yang L, Williamson J R",
                "protein_xref_pubmed",
                "9281317",
                "protein_xref_iptmnet",
                "P08487"
            ],
            [
                "P00514-1",
                "Phosphorylation of cAMP-dependent protein kinase subunits.",
                "Advances in enzyme regulation",
                "1982",
                "Geahlen RL, Carmichael DF, Hashimoto E, Krebs EG",
                "protein_xref_pubmed",
                "6287816",
                "protein_xref_iptmnet",
                "P00514"
            ]
        ]
    },
    "readme": "Name\n   - Bovine Proteoform Phosphorylation Citations (iPTMnet)\n\nVersion\n   - v-2.9.1\n\nCreated on\n  - 2021-06-03T17:29:17.656153\n\nModified on\n   - 2024-12-05T19:42:09.782Z\n\nCreated by\n   -  [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Bovine Proteoform Citations (iPTMNet) contains Bos taurus [taxid:9913] publication information of phosphorylated proteins from iPTMnet. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from iPTMnet. If you use this dataset please provide proper attribution to iPTMnet and GlyGen.\n\nExecution Domain\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/compiled/all_blacklisted_pmids.csv\n      Name: bovine_proteoform_phosphorylation_sites_iptmnet.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/bovine_proteoform_phosphorylation_sites_iptmnet.csv\n   Output Subdomain\n      Name: bovine_proteoform_citations_phosphorylation_sites_iptmnet.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/bovine_proteoform_citations_phosphorylation_sites_iptmnet.csv\n      Name: bovine_proteoform_citations_phosphorylation_sites_iptmnet.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/bovine_proteoform_citations_phosphorylation_sites_iptmnet.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"109\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"220\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"72\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"210\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"219\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"220\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"110\"",
    "downloadurl": "/ln2data/releases/data/v-2.9.1/reviewed/bovine_proteoform_citations_phosphorylation_sites_iptmnet.csv"
}