{
    "bcoid": "GLY_001108",
    "title": "Arabidopsis Proteoform Phosphorylation Citations (UniProtKB)",
    "description": "The Arabidopsis Proteoform Phosphorylation Citations (UniProtKB) dataset contains arabidopsis [taxid:3702] ...",
    "filename_list": "arabidopsis_proteoform_citations_phosphorylation_sites_uniprotkb.csv",
    "filename": "arabidopsis_proteoform_citations_phosphorylation_sites_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Arabidopsis thaliana"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Phosphorylation Citations UniProtKB"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q944A7-1...",
                "BSKs mediate..."
            ],
            [
                "P57750-1...",
                "Site-specifi..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "Q944A7-1",
                "BSKs mediate signal transduction from the receptor kinase BRI1 in Arabidopsis.",
                "Science (New York, N.Y.)",
                "2008-07-25",
                "Tang Wenqiang, Kim Tae-Wuk, Oses-Prieto Juan A, Sun Yu, Deng Zhiping, Zhu Shengwei, Wang Ruiju, Burlingame Alma L, Wang Zhi-Yong",
                "protein_xref_pubmed",
                "18653891",
                "protein_xref_uniprotkb",
                "Q944A7"
            ],
            [
                "P57750-1",
                "Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis.",
                "Journal of proteome research",
                "2008-06",
                "de la Fuente van Bentem Sergio, Anrather Dorothea, Dohnal Ilse, Roitinger Elisabeth, Csaszar Edina, Joore Jos, Buijnink Joshua, Carreri Alessandro, Forzani Celine, Lorkovic Zdravko J, Barta Andrea, Lecourieux David, Verhounig Andreas, Jonak Claudia, Hirt Heribert",
                "protein_xref_pubmed",
                "18433157",
                "protein_xref_uniprotkb",
                "P57750"
            ]
        ]
    },
    "readme": "Name\n   - Arabidopsis Proteoform Phosphorylation Citations (UniProtKB)\n\nVersion\n   - v-2.9.1\n\nCreated on\n  - 2021-10-15T08:00:04.645468\n\nModified on\n   - 2024-05-17T11:24:06.352Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Arabidopsis Proteoform Phosphorylation Citations (UniProtKB) dataset contains arabidopsis [taxid:3702] publication information of glycoproteins from UniProtKB. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nDescription Domain\n   Keywords\n   - publications\n   - PMID\n   - journal\n   - citations\n   - authors\n   - UniProtKB\n   - PubMed\n   - Phosphorylation\n\nExecution Domain\n   Scripts\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/compiled/all_blacklisted_pmids.csv\n      Name: arabidopsis_proteoform_phosphorylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/arabidopsis_proteoform_phosphorylation_sites_uniprotkb.csv\n   Output Subdomain\n      Name: arabidopsis_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/arabidopsis_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n      Name: arabidopsis_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/arabidopsis_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"674\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"135\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"51\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"126\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"134\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"135\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"674\"",
    "downloadurl": "/ln2data/releases/data/v-2.9.1/reviewed/arabidopsis_proteoform_citations_phosphorylation_sites_uniprotkb.csv"
}