{
    "bcoid": "GLY_001065",
    "title": "Arabidopsis Protein Information (NCBI RefSeq)",
    "description": "The Arabidopsis Protein Information (NCBI RefSeq) dataset contains Arabidopsis thaliana [taxid:3702] ...",
    "filename_list": "arabidopsis_protein_info_refseq.csv",
    "filename": "arabidopsis_protein_info_refseq.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Arabidopsis thaliana"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Information"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q94K75-1...",
                "NP_001077466..."
            ],
            [
                "Q84MB3-1...",
                "NP_172147..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "p_refseq_ac_..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "p_refseq_ac_best_match"
                },
                {
                    "type": "string",
                    "label": "refseq_protein_name"
                },
                {
                    "type": "string",
                    "label": "refseq_protein_length"
                },
                {
                    "type": "string",
                    "label": "refseq_protein_summary"
                }
            ],
            [
                "Q94K75-1",
                "NP_001077466",
                "Rho termination factor",
                "292",
                ""
            ],
            [
                "Q84MB3-1",
                "NP_172147",
                "2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein",
                "365",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Arabidopsis Protein Information (NCBI RefSeq)\n\nVersion\n   - v-2.9.1\n\nModified on\n   - 2024-07-10T11:26:31.727Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Not Applicable []\n\nChecksum\n   - \n\nUsability Domain\n   - The Arabidopsis Protein Information (NCBI RefSeq) dataset contains Arabidopsis thaliana [taxid:3702] protein information such as protein accession, name, length and protein function summary from NCBI RefSeq database. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen.\n\nDescription Domain\n   Keywords\n   - protein information\n   - protein length\n   - NCBI RefSeq\n   - protein summary\n\n   Pipeline Steps\n   - Step-1: The script parses the NCBI RefSeq gpff files to extract the accession, length, protein summary and then maps the NCBI RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: arabidopsis_protein_xref_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/arabidopsis_protein_xref_refseq.csv\n      Name: refseq_protein_all_3702.gpff\n      URI: https:/data.glygen.org/ln2downloads/ncbi/refseq/2025_05_16/refseq_protein_all_3702.gpff\n   Output Subdomain\n      Name: arabidopsis_protein_info_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/arabidopsis_protein_info_refseq.csv\n      Name: arabidopsis_protein_info_refseq.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/arabidopsis_protein_info_refseq.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"26472\"\n      Name: \"p_refseq_ac_best_match\"\n     Description: \"Best match NCBI RefSeq protein accession to UniProtKB canonical accession\"\n      Unique Values: \"26472\"\n      Name: \"refseq_protein_name\"\n     Description: \"Name of the protein in NCBI RefSeq database\"\n      Unique Values: \"11053\"\n      Name: \"refseq_protein_length\"\n     Description: \"Length of the protein in NCBI RefSeq database\"\n      Unique Values: \"1552\"\n      Name: \"refseq_protein_summary\"\n     Description: \"Function of the protein in NCBI RefSeq database\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.9.1/reviewed/arabidopsis_protein_info_refseq.csv"
}