{
    "bcoid": "GLY_001054",
    "title": "Arabidopsis Protein Binary Interactions (IntAct)",
    "description": "The Arabidopsis Protein Binary Interaction (IntAct) dataset contains Arabidopsis thaliana [taxid:3702] ...",
    "filename_list": "arabidopsis_protein_binary_interactions.csv",
    "filename": "arabidopsis_protein_binary_interactions.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Arabidopsis thaliana"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Binary Interaction"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q8L765-1...",
                "EBI-540891..."
            ],
            [
                "Q8L765-1...",
                "EBI-540891..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "intact_ac..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "intact_ac"
                },
                {
                    "type": "string",
                    "label": "participant_uniprotkb_ac"
                },
                {
                    "type": "string",
                    "label": "participant_intact_ac"
                },
                {
                    "type": "string",
                    "label": "participant_uniprotkb_id"
                },
                {
                    "type": "string",
                    "label": "participant_gene_symbol"
                },
                {
                    "type": "string",
                    "label": "participant_taxid"
                },
                {
                    "type": "string",
                    "label": "experiments"
                }
            ],
            [
                "Q8L765-1",
                "EBI-540891",
                "Q9MAI5",
                "EBI-2000137",
                "ERF79_ARATH",
                "ERF8",
                "3702",
                "3"
            ],
            [
                "Q8L765-1",
                "EBI-540891",
                "Q9SGS4",
                "EBI-25517863",
                "CDSP_ARATH",
                "CDSP32",
                "3702",
                "3"
            ]
        ]
    },
    "readme": "Name\n   - Arabidopsis Protein Binary Interactions (IntAct)\n\nVersion\n   - v-2.9.1\n\nCreated on\n  - 2024-07-08T12:02:42\n\nModified on\n   - 2024-07-08T12:05:36.480Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Arabidopsis Protein Binary Interaction (IntAct) dataset contains Arabidopsis thaliana [taxid:3702] binary interaction data for UniProtKB canonical accession from IntAct database. The data is quality filtered by UniProt from IntAct and contains information about the interactors, number of experiments, IntAct Ids etc.  If you use this dataset please provide proper attribution to UniProtKB and GlyGen\n\nDescription Domain\n   Keywords\n   - Binary Interactions\n   - IntAct\n   - UniProtKB\n\n   Pipeline Steps\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-arabidopsis-thaliana.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2025_05_20/uniprot-proteome-arabidopsis-thaliana.nt\n   Output Subdomain\n      Name: arabidopsis_protein_binary_interactions.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/arabidopsis_protein_binary_interactions.csv\n      Name: arabidopsis_protein_binary_interactions.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/arabidopsis_protein_binary_interactions.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"2252\"\n      Name: \"intact_ac\"\n     Description: \"The accession of an interacting protein in IntAct database\"\n      Unique Values: \"2254\"\n      Name: \"participant_uniprotkb_ac\"\n     Description: \"The UniProtKB accession of the interacting protein participant\"\n      Unique Values: \"2402\"\n      Name: \"participant_intact_ac\"\n     Description: \"The IntAct accession of the interacting protein participant\"\n      Unique Values: \"2402\"\n      Name: \"participant_uniprotkb_id\"\n     Description: \"The mnemonic identifier of the  interacting protein participant in UniProtKB\"\n      Unique Values: \"2392\"\n      Name: \"participant_gene_symbol\"\n     Description: \"The gene symbol of the interacting protein participant in UniProtKB\"\n      Unique Values: \"2362\"\n      Name: \"participant_taxid\"\n     Description: \"The NCBI Taxonomy identifier of the interacting protein participant in UniProtKB\"\n      Unique Values: \"33\"\n      Name: \"experiments\"\n     Description: \"Number of experiments performed to study the protein-protein binary interactions\"\n      Unique Values: \"22\"",
    "downloadurl": "/ln2data/releases/data/v-2.9.1/reviewed/arabidopsis_protein_binary_interactions.csv"
}