{
    "bcoid": "GLY_001008",
    "title": "Chicken Protein Submitted Names (UniProtKB)",
    "description": "The Chicken Protein Submitted Names (UniProtKB) dataset contains UniProtKB submitted names for Gallus ...",
    "filename_list": "chicken_protein_submittednames.csv",
    "filename": "chicken_protein_submittednames.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Gallus gallus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Submitted Names"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "A0A8V0ZIX6-1...",
                "Ovochymase 2..."
            ],
            [
                "A0A8V0XA18-1...",
                "Nyctalopin..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "submitted_na..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "submitted_name_full"
                },
                {
                    "type": "string",
                    "label": "submitted_name_short"
                },
                {
                    "type": "string",
                    "label": "ec_name"
                }
            ],
            [
                "A0A8V0ZIX6-1",
                "Ovochymase 2",
                "",
                ""
            ],
            [
                "A0A8V0XA18-1",
                "Nyctalopin",
                "",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Chicken Protein Submitted Names (UniProtKB)\n\nVersion\n   - v-2.9.1\n\nCreated on\n  - 2020-03-15T13:38:29.540245\n\nModified on\n   - 2024-05-21T14:18:23.180Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Chicken Protein Submitted Names (UniProtKB) dataset contains UniProtKB submitted names for Gallus gallus [taxid:9031] UniProtKB/TrEMBL proteins accessions. In UniProt, UniProtKB/TrEMBL entries usually have 'Submitted name' which may later be improved by automatic annotation procedures but if not, it remains as provided by the submitter until the entry is manually annotated and integrated to UniProtKB/Swiss-Prot. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - protein submitted name\n   - protein name\n   - UniProtKB\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB submitted names for protein accessions from the triplestore containing triples from nt file and extracts the recommended names into csv dataset file\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-gallus-gallus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2025_05_20/uniprot-proteome-gallus-gallus.nt\n   Output Subdomain\n      Name: chicken_protein_submittednames.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/chicken_protein_submittednames.csv\n      Name: chicken_protein_submittednames.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/chicken_protein_submittednames.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"8532\"\n      Name: \"submitted_name_full\"\n     Description: \"The full submitted protein name in UniProtKB\"\n      Unique Values: \"7931\"\n      Name: \"submitted_name_short\"\n     Description: \"The short submitted protein name in UniProtKB\"\n      Unique Values: \"1\"\n      Name: \"ec_name\"\n     Description: \"Enzyme Commision name assigned to an enzyme by the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB)\"\n      Unique Values: \"2\"",
    "downloadurl": "/ln2data/releases/data/v-2.9.1/reviewed/chicken_protein_submittednames.csv"
}