{
    "bcoid": "GLY_000770",
    "title": "Yeast Reactions Rhea",
    "description": "The Yeast Protein Reactions (Rhea) dataset contains reactions information for pathways for Saccharomyces ...",
    "filename_list": "yeast_protein_reactions_rhea.csv",
    "filename": "yeast_protein_reactions_rhea.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Saccharomyces cerevisiae S288C"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Reactions Rhea"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "10024...",
                "..."
            ],
            [
                "10025...",
                "..."
            ]
        ],
        "headers": [
            "reaction_id...",
            "reaction_nam..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "reaction_id"
                },
                {
                    "type": "string",
                    "label": "reaction_name"
                },
                {
                    "type": "string",
                    "label": "cellular_location"
                },
                {
                    "type": "string",
                    "label": "pmid"
                },
                {
                    "type": "string",
                    "label": "pathway_id"
                },
                {
                    "type": "string",
                    "label": "equation"
                },
                {
                    "type": "string",
                    "label": "reaction_summary"
                }
            ],
            [
                "10024",
                "",
                "",
                "",
                "",
                "L-lysyl-[histone] + S-adenosyl-L-methionine = N(6)-methyl-L-lysyl-[histone] + S-adenosyl-L-homocysteine + H(+)",
                ""
            ],
            [
                "10025",
                "",
                "",
                "",
                "",
                "L-lysyl-[histone] + S-adenosyl-L-methionine => N(6)-methyl-L-lysyl-[histone] + S-adenosyl-L-homocysteine + H(+)",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Yeast Reactions Rhea\n\nVersion\n   - v-2.9.1\n\nCreated on\n  - 2022-09-06T11:37:59.766468\n\nModified on\n   - 2025-03-04T18:45:41.813Z\n\nCreated by\n   -  [jeetvora@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Yeast Protein Reactions (Rhea) dataset contains reactions information for pathways for Saccharomyces cerevisiae S288C [taxid:559292] UniProtKB accessions that includes reaction participants ID, reaction ID, pathway ID, summary etc from Rhea database. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB, Rhea and GlyGen\"\n\nDescription Domain\n   Keywords\n   - Rhea\n   - Reactions\n   - Participants\n   - Enzymes\n\n   Pipeline Steps\n   - Step-1: The script loads the Rhea reaction data from the triplestore containing triples from nt file to retrieve the information associated with the Rhea reaction IDs and maps it to the UniProtKB canonical accessions and extracts the dataset in the csv format\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-saccharomyces-cerevisiae.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2025_05_20/uniprot-proteome-saccharomyces-cerevisiae.nt\n   Output Subdomain\n      Name: yeast_protein_reactions_rhea.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/yeast_protein_reactions_rhea.csv\n      Name: yeast_protein_reactions_rhea.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/yeast_protein_reactions_rhea.stat.csv\n\nFields\n      Name: \"reaction_id\"\n     Description: \"The identifier assigned to a reaction in Reactome database\"\n      Unique Values: \"1773\"\n      Name: \"reaction_name\"\n     Description: \"The name assigned to a reaction in Reactome database\"\n      Unique Values: \"1\"\n      Name: \"cellular_location\"\n     Description: \"The loaction in the cell where reaction occurs\"\n      Unique Values: \"1\"\n      Name: \"pmid\"\n     Description: \"NCBI PubMed database Identifier\"\n      Unique Values: \"1\"\n      Name: \"pathway_id\"\n     Description: \"Pathway Identifier\"\n      Unique Values: \"1\"\n      Name: \"equation\"\n     Description: \"\"\n      Unique Values: \"1773\"\n      Name: \"reaction_summary\"\n     Description: \"\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.9.1/reviewed/yeast_protein_reactions_rhea.csv"
}