{
    "bcoid": "GLY_000761",
    "title": "Yeast NCBI Protein Linkouts",
    "description": "The Yeast NCBI Protein Linkouts contains Saccharomyces cerevisiae S288C [taxid:559292] NCBI RefSeq accessions ...",
    "filename_list": "yeast_protein_ncbi_linkouts.csv",
    "filename": "yeast_protein_ncbi_linkouts.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Saccharomyces cerevisiae S288C"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "NCBI Gene Linkouts"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "10227...",
                "Protein..."
            ],
            [
                "10227...",
                "Protein..."
            ]
        ],
        "headers": [
            "ProviderId...",
            "Database..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "ProviderId"
                },
                {
                    "type": "string",
                    "label": "Database"
                },
                {
                    "type": "string",
                    "label": "UID"
                },
                {
                    "type": "string",
                    "label": "URL"
                },
                {
                    "type": "string",
                    "label": "IconUrl"
                },
                {
                    "type": "string",
                    "label": "UrlName"
                },
                {
                    "type": "string",
                    "label": "SubjectType"
                },
                {
                    "type": "string",
                    "label": "Attribute"
                }
            ],
            [
                "10227",
                "Protein",
                "NP_010448",
                "https://glygen.org/protein/P30619",
                "",
                "",
                "",
                ""
            ],
            [
                "10227",
                "Protein",
                "NP_010839",
                "https://glygen.org/protein/P39972",
                "",
                "",
                "",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Yeast NCBI Protein Linkouts\n\nVersion\n   - v-2.9.1\n\nCreated on\n  - 2022-09-14T12:25:39.026264\n\nModified on\n   - 2024-05-21T15:53:33.794Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Yeast NCBI Protein Linkouts contains Saccharomyces cerevisiae S288C [taxid:559292] NCBI RefSeq accessions with their corresponding GlyGen protein detail page URLs. The dataset is formatted as per NCBI non-bib linkout guidelines where 10277 is the GlyGen's provider ID.\n\nDescription Domain\n   Keywords\n   - NCBI Protein Linkouts\n   - RefSeq\n\n   Pipeline Steps\n   - Step-1: The script loads the RefSeq accessions, RefSeq protein name and based on the RefSeq-UniprotKB accession mapping generates the GlyGen protein detail page URLs. The script also enters the other fields as defined by the NCBI Protein Linkouts to generate a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: yeast_protein_xref_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/yeast_protein_xref_refseq.csv\n   Output Subdomain\n      Name: yeast_protein_ncbi_linkouts.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/yeast_protein_ncbi_linkouts.csv\n      Name: yeast_protein_ncbi_linkouts.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/yeast_protein_ncbi_linkouts.stat.csv\n\nFields\n      Name: \"ProviderId\"\n     Description: \"NA\"\n      Unique Values: \"1\"\n      Name: \"Database\"\n     Description: \"NA\"\n      Unique Values: \"1\"\n      Name: \"UID\"\n     Description: \"NA\"\n      Unique Values: \"5853\"\n      Name: \"URL\"\n     Description: \"NA\"\n      Unique Values: \"5853\"\n      Name: \"IconUrl\"\n     Description: \"NA\"\n      Unique Values: \"1\"\n      Name: \"UrlName\"\n     Description: \"NA\"\n      Unique Values: \"1\"\n      Name: \"SubjectType\"\n     Description: \"NA\"\n      Unique Values: \"1\"\n      Name: \"Attribute\"\n     Description: \"NA\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.9.1/reviewed/yeast_protein_ncbi_linkouts.csv"
}