{
    "bcoid": "GLY_000742",
    "title": "Fruitfly Protein Citations (Reactome)",
    "description": "The Fruitfly Protein Reactions (Reactome) dataset contains reactions information for pathways for Drosophila ...",
    "filename_list": "fruitfly_protein_citations_reactome.csv",
    "filename": "fruitfly_protein_citations_reactome.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Drosophila melanogaster"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Reactions Reactome"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "A0A0B4KHL4-1...",
                "Ligand recep..."
            ],
            [
                "Q9VVX3-1...",
                "Ligand recep..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "A0A0B4KHL4-1",
                "Ligand receptor interactions in the Wnt signaling pathway in Drosophila.",
                "The Journal of biological chemistry",
                "2002 Nov 1",
                "Wu CH, Nusse R",
                "protein_xref_pubmed",
                "12205098",
                "protein_xref_reactome",
                "R-DME-209472"
            ],
            [
                "Q9VVX3-1",
                "Ligand receptor interactions in the Wnt signaling pathway in Drosophila.",
                "The Journal of biological chemistry",
                "2002 Nov 1",
                "Wu CH, Nusse R",
                "protein_xref_pubmed",
                "12205098",
                "protein_xref_reactome",
                "R-DME-209472"
            ]
        ]
    },
    "readme": "Name\n   - Fruitfly Protein Citations (Reactome)\n\nVersion\n   - v-2.9.1\n\nCreated on\n  - 2019-11-30T12:49:42.900057\n\nModified on\n   - 2024-05-17T11:24:11.464Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Fruitfly Protein Reactions (Reactome) dataset contains reactions information for pathways for Drosophila melanogaster [taxid:7227] UniProtKB accessions that includes reaction participants, pathway ID, reaction ID, PMID etc from Reactome database. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - Reactome\n   - Pathway\n   - Reactions\n   - PMID\n\n   Pipeline Steps\n   - Step-1: The script loads the Reactome reaction data from the triplestore containing triples from nt file to retrieve the information associated with the Reactome IDs and maps it to the UniProtKB canonical accessions and extracts the dataset in the csv format\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/compiled/all_blacklisted_pmids.csv\n      Name: fruitfly_protein_reactions_reactome.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/fruitfly_protein_reactions_reactome.csv\n      Name: fruitfly_protein_xref_reactome.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/fruitfly_protein_xref_reactome.csv\n   Output Subdomain\n      Name: fruitfly_protein_citations_reactome.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/fruitfly_protein_citations_reactome.csv\n      Name: fruitfly_protein_citations_reactome.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/fruitfly_protein_citations_reactome.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"180\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"300\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"41\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"258\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"292\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"300\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"68\"",
    "downloadurl": "/ln2data/releases/data/v-2.9.1/reviewed/fruitfly_protein_citations_reactome.csv"
}