{
    "bcoid": "GLY_000736",
    "title": "GlyGen-iPTMnet Crossreferences Mapping",
    "description": "The GlyGen-iPTMnet Crossreferences dataset contains UniProtKB glycoprotein accessions for human [taxid:9606], ...",
    "filename_list": "protein_glygen_iptmnet_xref_mapping.csv",
    "filename": "protein_glygen_iptmnet_xref_mapping.csv",
    "filetype": "csv",
    "categories": {
        "molecule": [
            "Protein"
        ],
        "tag": [
            "GlyGen-iPTMnet Crossreferences"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "species": [
            "Homo sapiens",
            "Mus musculus",
            "Rattus norvegicus"
        ]
    },
    "minitable": {
        "content": [
            [
                "...",
                "28..."
            ],
            [
                "A0A075B7F1...",
                "95..."
            ]
        ],
        "headers": [
            "uniprotkb_ac...",
            "glycosylatio..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_ac"
                },
                {
                    "type": "string",
                    "label": "glycosylation_site_uniprotkb"
                },
                {
                    "type": "string",
                    "label": "amino_acid"
                },
                {
                    "type": "string",
                    "label": "glycosylation_type"
                },
                {
                    "type": "string",
                    "label": "pmid"
                },
                {
                    "type": "string",
                    "label": "glygen_url"
                }
            ],
            [
                "",
                "28",
                "",
                "o-linked",
                "26192747",
                "https://www.glygen.org/Siteview//28"
            ],
            [
                "A0A075B7F1",
                "95",
                "Asn",
                "n-linked",
                "29741879",
                "https://www.glygen.org/Siteview/A0A075B7F1/95"
            ]
        ]
    },
    "readme": "Name\n   - GlyGen-iPTMnet Crossreferences Mapping\n\nVersion\n   - v-2.9.1\n\nCreated on\n  - 2023-03-14T19:15:04.425Z\n\nModified on\n   - 2024-05-17T11:24:11.219Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The GlyGen-iPTMnet Crossreferences dataset contains UniProtKB glycoprotein accessions for human [taxid:9606], mouse [taxid:10090], rat [taxid:10116], fruitfly [taxid:7227], hcv1a [taxid:11108], hcv1b [taxid:11116], sarscov1 [taxid:694009] and sarscov2 [taxid:2697049] glycoproteins for the purpose of mapping UniProtKB glycosylation site info to PMID and GlyGen glycosylation site view URLs.\n\nDescription Domain\n   Keywords\n   - crossreferences\n   - iPTMnet\n   - glycosylation site\n   - UniProtKB\n\n   Pipeline Steps\n   - Step-1: The script loads the GlyGen's UniProtKB protein accessions for human, mouse, rat, fruitfly, hcv1a, hcv1b, sarscov1 and sarscov2 and extracts it into a csv dataset file.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: human_proteoform_glycosylation_sites_carbbank.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_proteoform_glycosylation_sites_carbbank.csv\n      Name: human_proteoform_glycosylation_sites_c_man.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_proteoform_glycosylation_sites_c_man.csv\n      Name: human_proteoform_glycosylation_sites_diabetes_glycomic.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_proteoform_glycosylation_sites_diabetes_glycomic.csv\n      Name: human_proteoform_glycosylation_sites_embl.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_proteoform_glycosylation_sites_embl.csv\n      Name: human_proteoform_glycosylation_sites_glycomeatlas.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_proteoform_glycosylation_sites_glycomeatlas.csv\n      Name: human_proteoform_glycosylation_sites_glyconnect.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_proteoform_glycosylation_sites_glyconnect.csv\n      Name: human_proteoform_glycosylation_sites_gptwiki.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_proteoform_glycosylation_sites_gptwiki.csv\n      Name: human_proteoform_glycosylation_sites_harvard.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_proteoform_glycosylation_sites_harvard.csv\n      Name: human_proteoform_glycosylation_sites_literature.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_proteoform_glycosylation_sites_literature.csv\n      Name: human_proteoform_glycosylation_sites_literature_mining.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_proteoform_glycosylation_sites_literature_mining.csv\n      Name: human_proteoform_glycosylation_sites_oglcnac_atlas.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_proteoform_glycosylation_sites_oglcnac_atlas.csv\n      Name: human_proteoform_glycosylation_sites_oglcnac_mcw.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_proteoform_glycosylation_sites_oglcnac_mcw.csv\n      Name: human_proteoform_glycosylation_sites_o_gluc.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_proteoform_glycosylation_sites_o_gluc.csv\n      Name: human_proteoform_glycosylation_sites_o_gluc_predicted.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_proteoform_glycosylation_sites_o_gluc_predicted.csv\n      Name: human_proteoform_glycosylation_sites_pdb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_proteoform_glycosylation_sites_pdb.csv\n      Name: human_proteoform_glycosylation_sites_pdc_ccrcc.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_proteoform_glycosylation_sites_pdc_ccrcc.csv\n      Name: human_proteoform_glycosylation_sites_platelet.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_proteoform_glycosylation_sites_platelet.csv\n      Name: human_proteoform_glycosylation_sites_predicted_isoglyp.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_proteoform_glycosylation_sites_predicted_isoglyp.csv\n      Name: human_proteoform_glycosylation_sites_rcsb_pdb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_proteoform_glycosylation_sites_rcsb_pdb.csv\n      Name: human_proteoform_glycosylation_sites_tablemaker.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_proteoform_glycosylation_sites_tablemaker.csv\n      Name: human_proteoform_glycosylation_sites_tyr_o_linked.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_proteoform_glycosylation_sites_tyr_o_linked.csv\n      Name: human_proteoform_glycosylation_sites_unicarbkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_proteoform_glycosylation_sites_unicarbkb.csv\n      Name: human_proteoform_glycosylation_sites_unicarbkb_glycomics_study.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_proteoform_glycosylation_sites_unicarbkb_glycomics_study.csv\n      Name: human_proteoform_glycosylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_proteoform_glycosylation_sites_uniprotkb.csv\n      Name: mouse_proteoform_glycosylation_sites_carbbank.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/mouse_proteoform_glycosylation_sites_carbbank.csv\n      Name: mouse_proteoform_glycosylation_sites_c_man.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/mouse_proteoform_glycosylation_sites_c_man.csv\n      Name: mouse_proteoform_glycosylation_sites_embl.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/mouse_proteoform_glycosylation_sites_embl.csv\n      Name: mouse_proteoform_glycosylation_sites_glycomeatlas.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/mouse_proteoform_glycosylation_sites_glycomeatlas.csv\n      Name: mouse_proteoform_glycosylation_sites_glyconnect.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/mouse_proteoform_glycosylation_sites_glyconnect.csv\n      Name: mouse_proteoform_glycosylation_sites_literature_mining.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/mouse_proteoform_glycosylation_sites_literature_mining.csv\n      Name: mouse_proteoform_glycosylation_sites_oglcnac_atlas.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/mouse_proteoform_glycosylation_sites_oglcnac_atlas.csv\n      Name: mouse_proteoform_glycosylation_sites_oglcnac_mcw.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/mouse_proteoform_glycosylation_sites_oglcnac_mcw.csv\n      Name: mouse_proteoform_glycosylation_sites_pdb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/mouse_proteoform_glycosylation_sites_pdb.csv\n      Name: mouse_proteoform_glycosylation_sites_predicted_isoglyp.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/mouse_proteoform_glycosylation_sites_predicted_isoglyp.csv\n      Name: mouse_proteoform_glycosylation_sites_unicarbkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/mouse_proteoform_glycosylation_sites_unicarbkb.csv\n      Name: mouse_proteoform_glycosylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/mouse_proteoform_glycosylation_sites_uniprotkb.csv\n      Name: rat_proteoform_glycosylation_sites_glyconnect.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/rat_proteoform_glycosylation_sites_glyconnect.csv\n      Name: rat_proteoform_glycosylation_sites_literature_mining.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/rat_proteoform_glycosylation_sites_literature_mining.csv\n      Name: rat_proteoform_glycosylation_sites_oglcnac_atlas.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/rat_proteoform_glycosylation_sites_oglcnac_atlas.csv\n      Name: rat_proteoform_glycosylation_sites_oglcnac_mcw.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/rat_proteoform_glycosylation_sites_oglcnac_mcw.csv\n      Name: rat_proteoform_glycosylation_sites_pdb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/rat_proteoform_glycosylation_sites_pdb.csv\n      Name: rat_proteoform_glycosylation_sites_predicted_isoglyp.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/rat_proteoform_glycosylation_sites_predicted_isoglyp.csv\n      Name: rat_proteoform_glycosylation_sites_unicarbkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/rat_proteoform_glycosylation_sites_unicarbkb.csv\n      Name: rat_proteoform_glycosylation_sites_unicarbkb_glycomics_study.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/rat_proteoform_glycosylation_sites_unicarbkb_glycomics_study.csv\n      Name: rat_proteoform_glycosylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/rat_proteoform_glycosylation_sites_uniprotkb.csv\n   Output Subdomain\n      Name: protein_glygen_iptmnet_xref_mapping.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/protein_glygen_iptmnet_xref_mapping.csv\n      Name: protein_glygen_iptmnet_xref_mapping.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/protein_glygen_iptmnet_xref_mapping.stat.csv\n\nFields\n      Name: \"uniprotkb_ac\"\n     Description: \"Accession assigned to the protein in the UniProtKB database\"\n      Unique Values: \"10167\"\n      Name: \"glycosylation_site_uniprotkb\"\n     Description: \"Site on the protein sequence of the UniProtKB entry where glycosylation is observed\"\n      Unique Values: \"3430\"\n      Name: \"amino_acid\"\n     Description: \"Three letter abbreviation code of the amino acid\"\n      Unique Values: \"8\"\n      Name: \"glycosylation_type\"\n     Description: \"Type of glycosylation (N/O/C/S linked glycosylation)\"\n      Unique Values: \"5\"\n      Name: \"pmid\"\n     Description: \"NCBI PubMed database Identifier\"\n      Unique Values: \"9400\"\n      Name: \"glygen_url\"\n     Description: \"\"\n      Unique Values: \"40342\"",
    "downloadurl": "/ln2data/releases/data/v-2.9.1/reviewed/protein_glygen_iptmnet_xref_mapping.csv"
}