{
    "bcoid": "GLY_000719",
    "title": "Mouse Glycan Interaction Data Citations (MatrixDB)",
    "description": "The Mouse Glycan Interaction Data Citations (MatrixDB) dataset contains details of the publication present ...",
    "filename_list": "mouse_protein_citations_matrixdb.csv",
    "filename": "mouse_protein_citations_matrixdb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Mus musculus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Glycan Interaction Data Citations (MatrixDB)"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P19137-1...",
                "Binding of t..."
            ],
            [
                "Q60675-1...",
                "Binding of t..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "P19137-1",
                "Binding of the G domains of laminin alpha1 and alpha2 chains and perlecan to heparin, sulfatides, alpha-dystroglycan and several extracellular matrix proteins.",
                "The EMBO journal",
                "1999 Feb 15",
                "Talts JF, Andac Z, Gohring W, Brancaccio A, Timpl R",
                "protein_xref_pubmed",
                "10022829",
                "glycan_xref_matrixdb",
                "GAG_1"
            ],
            [
                "Q60675-1",
                "Binding of the G domains of laminin alpha1 and alpha2 chains and perlecan to heparin, sulfatides, alpha-dystroglycan and several extracellular matrix proteins.",
                "The EMBO journal",
                "1999 Feb 15",
                "Talts JF, Andac Z, Gohring W, Brancaccio A, Timpl R",
                "protein_xref_pubmed",
                "10022829",
                "glycan_xref_matrixdb",
                "GAG_1"
            ]
        ]
    },
    "readme": "Name\n   - Mouse Glycan Interaction Data Citations (MatrixDB)\n\nVersion\n   - v-2.9.1\n\nModified on\n   - 2024-05-21T16:22:39.632Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Sylvie Ricard-Blum [sylvie.ricard-blum@univ-lyon1.fr]\n\nChecksum\n   - \n\nUsability Domain\n   - The Mouse Glycan Interaction Data Citations (MatrixDB) dataset contains details of the publication present in the Mouse Glycan Interaction Data (MatrixDB) dataset (https://data.glygen.org/GLY_000333).\n\nDescription Domain\n   Keywords\n   - MatrixDB\n   - Glycan Interaction\n   - Publications\n   - Citations\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the dataset and uses the Entrez API to retrieve the publication details and extracts in a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: mouse_protein_matrixdb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/mouse_protein_matrixdb.csv\n   Output Subdomain\n      Name: mouse_protein_citations_matrixdb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/mouse_protein_citations_matrixdb.csv\n      Name: mouse_protein_citations_matrixdb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/mouse_protein_citations_matrixdb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"16\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"13\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"6\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"13\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"13\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"13\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"5\"",
    "downloadurl": "/ln2data/releases/data/v-2.9.1/reviewed/mouse_protein_citations_matrixdb.csv"
}