{
    "bcoid": "GLY_000609",
    "title": "Rat Proteoform Phosphorylation Citations (UniProtKB)",
    "description": "The Rat Proteoform Phosphorylation Citations (UniProtKB) dataset contains Rattus norvegicus [taxid:10116] ...",
    "filename_list": "rat_proteoform_citations_phosphorylation_sites_uniprotkb.csv",
    "filename": "rat_proteoform_citations_phosphorylation_sites_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Rattus norvegicus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Phosphorylation Citations UniProtKB"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q9QZM5-1...",
                "Abelson inte..."
            ],
            [
                "P67999-1...",
                "Regulation o..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "Q9QZM5-1",
                "Abelson interacting protein 1 (Abi-1) is essential for dendrite morphogenesis and synapse formation.",
                "The EMBO journal",
                "2007 Mar 7",
                "Proepper C, Johannsen S, Liebau S, Dahl J, Vaida B, Bockmann J, Kreutz MR, Gundelfinger ED, Boeckers TM",
                "protein_xref_pubmed",
                "17304222",
                "protein_xref_uniprotkb",
                "Q9QZM5"
            ],
            [
                "P67999-1",
                "Regulation of the p70 S6 kinase by phosphorylation in vivo. Analysis using site-specific anti-phosphopeptide antibodies.",
                "The Journal of biological chemistry",
                "1998 Jun 26",
                "Weng QP, Kozlowski M, Belham C, Zhang A, Comb MJ, Avruch J",
                "protein_xref_pubmed",
                "9632736",
                "protein_xref_uniprotkb",
                "P67999"
            ]
        ]
    },
    "readme": "Name\n   - Rat Proteoform Phosphorylation Citations (UniProtKB)\n\nVersion\n   - v-2.9.1\n\nCreated on\n  - 2021-10-15T08:03:13.531431\n\nModified on\n   - 2024-12-10T21:28:52.383Z\n\nCreated by\n   -  [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Rat Proteoform Phosphorylation Citations (UniProtKB) dataset contains Rattus norvegicus [taxid:10116] publication information of phosphorylated glycoproteins from UniProtKB. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nDescription Domain\n   Keywords\n   - publications\n   - PMID\n   - journal\n   - citations\n   - authors\n   - UniProtKB\n   - PubMed\n   - Phosphorylation\n\nExecution Domain\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/compiled/all_blacklisted_pmids.csv\n      Name: rat_proteoform_phosphorylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/rat_proteoform_phosphorylation_sites_uniprotkb.csv\n   Output Subdomain\n      Name: rat_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/rat_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n      Name: rat_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/rat_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"2074\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"140\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"42\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"140\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"139\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"140\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"2074\"",
    "downloadurl": "/ln2data/releases/data/v-2.9.1/reviewed/rat_proteoform_citations_phosphorylation_sites_uniprotkb.csv"
}