{
    "bcoid": "GLY_000607",
    "title": "Human Proteoform Phosphorylation Citations (UniProtKB)",
    "description": "The Human Proteoform Phosphorylation Citations (UniProtKB) dataset contains human [taxid:9606] publication ...",
    "filename_list": "human_proteoform_citations_phosphorylation_sites_uniprotkb.csv",
    "filename": "human_proteoform_citations_phosphorylation_sites_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Homo sapiens"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Phosphorylation Citations UniProtKB"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P11388-1...",
                "System-wide ..."
            ],
            [
                "O75521-1...",
                "Toward a com..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "P11388-1",
                "System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation.",
                "Science signaling",
                "2011 Mar 15",
                "Rigbolt KT, Prokhorova TA, Akimov V, Henningsen J, Johansen PT, Kratchmarova I, Kassem M, Mann M, Olsen JV, Blagoev B",
                "protein_xref_pubmed",
                "21406692",
                "protein_xref_uniprotkb",
                "P11388"
            ],
            [
                "O75521-1",
                "Toward a comprehensive characterization of a human cancer cell phosphoproteome.",
                "Journal of proteome research",
                "2013 Jan 4",
                "Zhou H, Di Palma S, Preisinger C, Peng M, Polat AN, Heck AJ, Mohammed S",
                "protein_xref_pubmed",
                "23186163",
                "protein_xref_uniprotkb",
                "O75521"
            ]
        ]
    },
    "readme": "Name\n   - Human Proteoform Phosphorylation Citations (UniProtKB)\n\nVersion\n   - v-2.9.1\n\nCreated on\n  - 2021-10-15T08:00:04.645468\n\nModified on\n   - 2024-05-17T11:24:06.352Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Human Proteoform Phosphorylation Citations (UniProtKB) dataset contains human [taxid:9606] publication information of glycoproteins from UniProtKB. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nDescription Domain\n   Keywords\n   - publications\n   - PMID\n   - journal\n   - citations\n   - authors\n   - UniProtKB\n   - PubMed\n   - Phosphorylation\n\nExecution Domain\n   Scripts\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/compiled/all_blacklisted_pmids.csv\n      Name: human_proteoform_phosphorylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_proteoform_phosphorylation_sites_uniprotkb.csv\n   Output Subdomain\n      Name: human_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n      Name: human_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"6136\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"951\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"153\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"800\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"951\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"951\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"6138\"",
    "downloadurl": "/ln2data/releases/data/v-2.9.1/reviewed/human_proteoform_citations_phosphorylation_sites_uniprotkb.csv"
}