{
    "bcoid": "GLY_000529",
    "title": "Human Protein Diseases (GlyCosmos)",
    "description": "The file contain disease data associated to protein/gene downloaded from GlyCosmos database. [https://glycosmos.org/homes/download]. ...",
    "filename_list": "human_protein_disease_glycosmos.csv",
    "filename": "human_protein_disease_glycosmos.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Homo sapiens"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Disease GlyCosmos"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q9H553-1...",
                "protein_xref..."
            ],
            [
                "P51688-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "do_id"
                },
                {
                    "type": "string",
                    "label": "mondo_id"
                },
                {
                    "type": "string",
                    "label": "mim_id"
                },
                {
                    "type": "string",
                    "label": "ggd_id"
                },
                {
                    "type": "string",
                    "label": "ggd_name"
                }
            ],
            [
                "Q9H553-1",
                "protein_xref_glycosmos_disease",
                "85365",
                "0080561",
                "0011933",
                "607906",
                "CON00351",
                "CDG1I"
            ],
            [
                "P51688-1",
                "protein_xref_glycosmos_disease",
                "6448",
                "0111395",
                "0009655",
                "252900",
                "CON00034",
                "MUCOPOLYSACCHARIDOSIS TYPE IIIA"
            ]
        ]
    },
    "readme": "Name\n   - Human Protein Diseases (GlyCosmos)\n\nVersion\n   - v-2.9.1\n\nCreated on\n  - 2020-09-24T13:34:03.947890\n\nModified on\n   - 2024-05-17T11:24:03.629Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Not Applicable []\n\nChecksum\n   - \n\nUsability Domain\n   - The file contain disease data associated to protein/gene downloaded from GlyCosmos database. [https://glycosmos.org/homes/download]. \n\nDescription Domain\n   Keywords\n   - Gene\n   - Protein\n   - Disease\n   - GlyCosmos\n\n   Pipeline Steps\n   - Step-0: The file is downloaded from the GlyCosmos database directly. The following steps are done to generate the final output file: 1. Mapping gene_id to UniProtKB accession from input file 1 2) Map the dd_uri to mim_id and disease name from input file 2 3) Map mim_id to doid and mongo ids using input file 3. \n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: protein_disease_idmap.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/protein_disease_idmap.csv\n      Name: glycosmos_gdgdb.csv\n      URI: https:/data.glygen.org/ln2downloads/glycosmos/2025_06_23/glycosmos_gdgdb.csv\n      Name: ggdonto.ttl\n      URI: https:/data.glygen.org/ln2downloads/glycosmos/2025_06_23/graph-1/ggdonto.ttl\n   Output Subdomain\n      Name: human_protein_disease_glycosmos.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_protein_disease_glycosmos.csv\n      Name: human_protein_disease_glycosmos.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_protein_disease_glycosmos.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"80\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"80\"\n      Name: \"do_id\"\n     Description: \"Disease Ontology identifier\"\n      Unique Values: \"94\"\n      Name: \"mondo_id\"\n     Description: \"The Mondo Disease Ontology (MONDO) identifier\"\n      Unique Values: \"93\"\n      Name: \"mim_id\"\n     Description: \"Disease ID from the OMIM database\"\n      Unique Values: \"93\"\n      Name: \"ggd_id\"\n     Description: \"\"\n      Unique Values: \"95\"\n      Name: \"ggd_name\"\n     Description: \"\"\n      Unique Values: \"93\"",
    "downloadurl": "/ln2data/releases/data/v-2.9.1/reviewed/human_protein_disease_glycosmos.csv"
}